Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47687 * 2 1 4 4 C 1.50699 * 109.46912 * 240.00251 * 2 1 3 5 5 H 1.07998 * 119.99991 * 240.00393 * 4 2 1 6 6 C 1.37880 * 120.00415 * 60.00378 * 4 2 1 7 7 N 1.31513 * 119.99639 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47225 * 60.00046 * 8 6 4 10 10 H 1.48506 * 109.46918 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47192 * 299.99828 * 8 6 4 12 12 N 1.46902 * 109.47001 * 120.00485 * 2 1 3 13 13 C 1.46895 * 110.99692 * 274.99710 * 12 2 1 14 14 H 1.09000 * 115.56144 * 9.28134 * 13 12 2 15 15 C 1.53088 * 117.53956 * 223.51096 * 13 12 2 16 16 C 1.52554 * 117.50779 * 154.99839 * 13 12 2 17 17 C 1.53873 * 120.82606 * 217.70248 * 16 13 12 18 18 C 1.54995 * 104.18138 * 167.71248 * 17 16 13 19 19 C 1.54927 * 102.81509 * 322.35237 * 18 17 16 20 20 C 1.53834 * 121.25051 * 356.97952 * 16 13 12 21 21 H 1.08997 * 109.46854 * 299.99925 * 1 2 3 22 22 H 1.09012 * 109.46780 * 59.99451 * 1 2 3 23 23 H 1.08991 * 109.47527 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00366 * 180.02562 * 7 6 4 25 25 H 1.00897 * 110.99840 * 38.95057 * 12 2 1 26 26 H 1.09000 * 117.51184 * 145.10358 * 15 13 12 27 27 H 1.09011 * 117.50884 * 0.02562 * 15 13 12 28 28 H 1.09002 * 110.51167 * 48.99795 * 17 16 13 29 29 H 1.08994 * 110.51292 * 286.42456 * 17 16 13 30 30 H 1.08993 * 110.74380 * 80.68870 * 18 17 16 31 31 H 1.08997 * 110.73772 * 203.84383 * 18 17 16 32 32 H 1.09000 * 110.47684 * 156.41119 * 19 18 17 33 33 H 1.08997 * 110.48184 * 278.91292 * 19 18 17 34 34 H 1.08993 * 110.04374 * 96.70017 * 20 16 13 35 35 H 1.09000 * 110.10957 * 335.21559 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5196 -4.0084 10 1 1.8279 -0.4189 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2224 2.3468 14 1 1.6231 1.1992 2.1951 15 6 3.3258 0.1565 3.2375 16 6 1.9932 -0.3892 3.7415 17 6 1.2251 0.3244 4.8678 18 6 1.1056 -0.7454 5.9830 19 6 0.8733 -2.0515 5.1827 20 6 1.7741 -1.8991 3.9383 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7082 1.1611 -3.4843 25 1 1.4495 -1.4980 1.4099 26 1 3.6842 1.0898 3.6717 27 1 4.0978 -0.5658 2.9718 28 1 0.2369 0.6287 4.5229 29 1 1.7863 1.1877 5.2253 30 1 2.0279 -0.8054 6.5607 31 1 0.2574 -0.5318 6.6334 32 1 1.1776 -2.9178 5.7701 33 1 -0.1731 -2.1385 4.8903 34 1 2.7295 -2.3966 4.1049 35 1 1.2795 -2.3231 3.0643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307604515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = 6.952535 kcal Electronic energy + Delta-G solvation = -13971.462737 eV Core-core repulsion = 11776.188686 eV Total energy + Delta-G solvation = -2195.274052 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.98081 -35.55866 -33.52488 -31.43074 -28.63335 -27.27401 -25.11251 -25.06669 -21.19886 -20.72730 -19.71597 -18.31918 -16.35184 -15.46244 -15.12156 -14.80436 -14.35915 -13.24407 -13.09660 -12.78960 -12.28464 -12.14145 -11.96449 -11.42256 -11.01206 -10.93675 -10.90957 -10.80641 -10.69353 -10.52358 -10.45719 -10.11602 -9.95838 -9.87376 -9.12006 -8.87029 -8.33272 -7.13203 -5.96144 -3.99370 3.36346 3.39910 3.43539 4.25313 4.44717 4.65794 4.85483 5.02205 5.22589 5.30083 5.35408 5.51673 5.61961 5.76041 5.88717 5.94914 6.03423 6.11244 6.18510 6.21812 6.31197 6.38728 6.44726 6.51573 6.65414 6.73285 6.87981 7.13024 7.41816 7.76638 7.92261 8.31552 8.56506 8.65313 9.07444 9.65699 11.11039 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057214 B = 0.006766 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.277209 B = 4137.557007 C = 4192.017815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.652 5.652 13 C 0.049 3.951 14 H 0.089 0.911 15 C -0.164 4.164 16 C -0.152 4.152 17 C -0.088 4.088 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.083 4.083 21 H 0.005 0.995 22 H 0.089 0.911 23 H 0.027 0.973 24 H 0.260 0.740 25 H 0.327 0.673 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 -2.363 13.476 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.282 5.282 13 C -0.063 4.063 14 H 0.107 0.893 15 C -0.203 4.203 16 C -0.153 4.153 17 C -0.125 4.125 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.121 4.121 21 H 0.024 0.976 22 H 0.107 0.893 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.303 -2.181 13.125 13.309 hybrid contribution -0.629 -0.252 -0.701 0.975 sum -0.326 -2.433 12.424 12.664 Atomic orbital electron populations 1.22451 1.00645 0.99152 1.00496 1.19240 0.89601 0.94431 0.86245 0.94736 1.21113 1.30271 1.12449 0.89632 0.92033 1.24946 0.95338 0.95212 0.99021 1.69873 1.37278 1.23207 1.23434 0.86554 0.79186 0.79571 0.82016 1.20386 1.21455 1.20295 1.60575 1.57023 1.08362 1.02240 1.22447 0.99814 0.97127 0.86891 0.89300 1.23193 0.91527 1.01775 1.03773 1.22150 1.01299 0.95214 0.96631 1.21861 0.99537 0.97125 0.94006 1.22449 1.00954 0.95294 0.97115 1.22341 0.99793 0.97335 0.96536 1.21530 0.99378 0.93709 0.97464 0.97582 0.89287 0.95430 0.93024 0.85257 0.89768 0.88779 0.91679 0.92080 0.91749 0.92083 0.92058 0.91855 0.91839 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.45 2.47 -68.86 -0.17 5.28 16 3 H 0.03 0.98 7.73 -51.93 -0.40 0.57 16 4 C -0.50 -13.96 8.84 -34.44 -0.30 -14.27 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -26.00 11.32 55.43 0.63 -25.38 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.65 -14.26 6.38 -101.15 -0.65 -14.90 16 13 C 0.05 0.92 5.83 -67.90 -0.40 0.52 16 14 H 0.09 1.75 7.77 -51.93 -0.40 1.35 16 15 C -0.16 -2.68 10.17 -26.90 -0.27 -2.95 16 16 C -0.15 -2.31 2.47 -154.07 -0.38 -2.69 16 17 C -0.09 -1.14 6.57 -25.22 -0.17 -1.31 16 18 C -0.12 -1.35 6.91 -24.66 -0.17 -1.52 16 19 C -0.12 -1.44 6.84 -24.99 -0.17 -1.61 16 20 C -0.08 -1.17 6.33 -25.57 -0.16 -1.34 16 21 H 0.01 0.12 8.07 -51.93 -0.42 -0.30 16 22 H 0.09 2.40 6.07 -51.92 -0.32 2.09 16 23 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.33 6.83 6.53 -39.29 -0.26 6.58 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.02 6.39 -51.93 -0.33 0.68 16 LS Contribution 279.29 15.07 4.21 4.21 Total: -1.00 -28.34 279.29 -8.68 -37.03 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.90 Total: 4.51 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -1.96 Total: -22.20 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.02 Total: -40.28 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.34 -8.68 -37.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.980 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds