Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47687 * 2 1 4 4 C 1.50699 * 109.46912 * 240.00251 * 2 1 3 5 5 H 1.07998 * 119.99991 * 240.00393 * 4 2 1 6 6 C 1.37880 * 120.00415 * 60.00378 * 4 2 1 7 7 N 1.31513 * 119.99639 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47225 * 60.00046 * 8 6 4 10 10 H 1.48506 * 109.46918 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47192 * 299.99828 * 8 6 4 12 12 N 1.46902 * 109.47001 * 120.00485 * 2 1 3 13 13 C 1.46895 * 110.99692 * 274.99710 * 12 2 1 14 14 H 1.09000 * 115.56144 * 9.28134 * 13 12 2 15 15 C 1.53088 * 117.53956 * 223.51096 * 13 12 2 16 16 C 1.52554 * 117.50779 * 154.99839 * 13 12 2 17 17 C 1.53873 * 120.82606 * 217.70248 * 16 13 12 18 18 C 1.54995 * 104.18138 * 167.71248 * 17 16 13 19 19 C 1.54927 * 102.81509 * 322.35237 * 18 17 16 20 20 C 1.53834 * 121.25051 * 356.97952 * 16 13 12 21 21 H 1.08997 * 109.46854 * 299.99925 * 1 2 3 22 22 H 1.09012 * 109.46780 * 59.99451 * 1 2 3 23 23 H 1.08991 * 109.47527 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00366 * 180.02562 * 7 6 4 25 25 H 1.00897 * 110.99840 * 38.95057 * 12 2 1 26 26 H 1.09000 * 117.51184 * 145.10358 * 15 13 12 27 27 H 1.09011 * 117.50884 * 0.02562 * 15 13 12 28 28 H 1.09002 * 110.51167 * 48.99795 * 17 16 13 29 29 H 1.08994 * 110.51292 * 286.42456 * 17 16 13 30 30 H 1.08993 * 110.74380 * 80.68870 * 18 17 16 31 31 H 1.08997 * 110.73772 * 203.84383 * 18 17 16 32 32 H 1.09000 * 110.47684 * 156.41119 * 19 18 17 33 33 H 1.08997 * 110.48184 * 278.91292 * 19 18 17 34 34 H 1.08993 * 110.04374 * 96.70017 * 20 16 13 35 35 H 1.09000 * 110.10957 * 335.21559 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5196 -4.0084 10 1 1.8279 -0.4189 -5.2205 11 1 3.8074 -1.1189 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2224 2.3468 14 1 1.6231 1.1992 2.1951 15 6 3.3258 0.1565 3.2375 16 6 1.9932 -0.3892 3.7415 17 6 1.2251 0.3244 4.8678 18 6 1.1056 -0.7454 5.9830 19 6 0.8733 -2.0515 5.1827 20 6 1.7741 -1.8991 3.9383 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7082 1.1611 -3.4843 25 1 1.4495 -1.4980 1.4099 26 1 3.6842 1.0898 3.6717 27 1 4.0978 -0.5658 2.9718 28 1 0.2369 0.6287 4.5229 29 1 1.7863 1.1877 5.2253 30 1 2.0279 -0.8054 6.5607 31 1 0.2574 -0.5318 6.6334 32 1 1.1776 -2.9178 5.7701 33 1 -0.1731 -2.1385 4.8903 34 1 2.7295 -2.3966 4.1049 35 1 1.2795 -2.3231 3.0643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307604515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = -9.346646 kcal Electronic energy + Delta-G solvation = -13972.169523 eV Core-core repulsion = 11776.188686 eV Total energy + Delta-G solvation = -2195.980837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25324 -37.23349 -35.10209 -33.31580 -29.78846 -29.00407 -27.24729 -26.19617 -22.82925 -22.13236 -21.12608 -19.62657 -18.30464 -16.94792 -16.57622 -16.35200 -15.84891 -14.86353 -14.60636 -14.21893 -13.92653 -13.59845 -13.30490 -13.17879 -12.83923 -12.72743 -12.47145 -12.19389 -12.02948 -11.89654 -11.84109 -11.69505 -11.40474 -11.38482 -10.95485 -10.50964 -10.38641 -8.85001 -8.10898 -6.22749 1.42669 1.44925 1.52714 2.43182 2.93103 3.17109 3.36077 3.71410 3.81564 4.04990 4.25401 4.33820 4.50952 4.59951 4.70007 4.74196 4.83689 4.89883 4.90656 4.98123 5.06667 5.09377 5.12197 5.18375 5.24530 5.33771 5.42464 5.47184 5.52000 5.66954 5.82030 6.26279 6.64433 6.81655 6.92160 7.47260 8.94771 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057214 B = 0.006766 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.277209 B = 4137.557007 C = 4192.017815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.654 5.654 13 C 0.012 3.988 14 H 0.074 0.926 15 C -0.157 4.157 16 C -0.129 4.129 17 C -0.090 4.090 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.089 4.089 21 H 0.022 0.978 22 H 0.063 0.937 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.331 0.669 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 -3.231 14.867 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.110 3.890 3 H 0.017 0.983 4 C -0.558 4.558 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.284 5.284 13 C -0.099 4.099 14 H 0.092 0.908 15 C -0.195 4.195 16 C -0.131 4.131 17 C -0.128 4.128 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.126 4.126 21 H 0.041 0.959 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.151 0.849 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.447 -3.051 14.541 14.864 hybrid contribution -0.662 0.049 -1.091 1.276 sum -0.215 -3.003 13.450 13.783 Atomic orbital electron populations 1.22241 0.99895 0.99146 0.99985 1.18969 0.90057 0.92556 0.87415 0.98256 1.21413 1.30672 1.12573 0.91097 0.92780 1.25746 0.95386 0.95874 1.01962 1.70003 1.37921 1.24259 1.24141 0.85529 0.78614 0.78677 0.78282 1.19532 1.20815 1.19936 1.60454 1.56795 1.08793 1.02401 1.22424 1.03022 0.96555 0.87915 0.90827 1.23226 0.91221 1.02583 1.02462 1.22279 0.99998 0.96356 0.94438 1.21934 0.99000 0.98059 0.93789 1.22445 1.02345 0.93752 0.96527 1.22342 0.99201 0.98586 0.95496 1.21613 1.00144 0.92585 0.98281 0.95859 0.91862 0.95018 0.92916 0.84938 0.87978 0.89402 0.92089 0.91051 0.90707 0.90201 0.90188 0.91820 0.91423 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.65 8.94 71.98 0.64 -7.00 16 2 C 0.22 11.55 2.47 44.17 0.11 11.66 16 3 H 0.00 -0.03 7.73 -2.39 -0.02 -0.05 16 4 C -0.52 -29.78 8.84 25.60 0.23 -29.55 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -54.33 11.32 21.45 0.24 -54.08 16 8 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 N -0.65 -29.16 6.38 -473.93 -3.02 -32.18 16 13 C 0.01 0.45 5.83 44.80 0.26 0.72 16 14 H 0.07 2.99 7.77 -2.39 -0.02 2.97 16 15 C -0.16 -4.96 10.17 30.48 0.31 -4.65 16 16 C -0.13 -3.78 2.47 -51.90 -0.13 -3.90 16 17 C -0.09 -2.14 6.57 31.57 0.21 -1.93 16 18 C -0.11 -2.13 6.91 31.94 0.22 -1.90 16 19 C -0.12 -2.43 6.84 31.72 0.22 -2.22 16 20 C -0.09 -2.35 6.33 31.35 0.20 -2.15 16 21 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 22 H 0.06 3.49 6.07 -2.38 -0.01 3.48 16 23 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H 0.33 13.98 6.53 -89.70 -0.59 13.39 16 26 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.54 6.39 -2.39 -0.02 1.53 16 Total: -1.00 -60.89 279.29 2.42 -58.47 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.46 Total: 21.04 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 2.71 Total: -40.00 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.78 Total: -86.27 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -60.89 2.42 -58.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.119 kcal (2) G-P(sol) polarization free energy of solvation -60.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds