Wall clock time and date at job start Mon Mar 30 2020 02:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47176 * 89.99381 * 8 6 4 10 10 H 1.48495 * 109.47439 * 209.99938 * 8 6 4 11 11 H 1.48500 * 109.46731 * 330.00116 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 H 1.08996 * 115.55649 * 350.66682 * 13 12 2 15 15 C 1.53081 * 117.50988 * 136.39184 * 13 12 2 16 16 C 1.52557 * 117.50785 * 204.89367 * 13 12 2 17 17 C 1.53870 * 120.82556 * 142.33481 * 16 13 12 18 18 C 1.54988 * 104.05974 * 192.34744 * 17 16 13 19 19 C 1.54924 * 102.82060 * 37.57315 * 18 17 16 20 20 C 1.53482 * 121.09123 * 2.95874 * 16 13 12 21 21 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 24 24 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 25 25 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 26 26 H 1.09003 * 117.51099 * 214.91075 * 15 13 12 27 27 H 1.09001 * 117.51223 * 359.97438 * 15 13 12 28 28 H 1.08997 * 110.51662 * 310.99633 * 17 16 13 29 29 H 1.09006 * 110.51019 * 73.71005 * 17 16 13 30 30 H 1.09006 * 110.74448 * 279.23708 * 18 17 16 31 31 H 1.09007 * 110.89965 * 155.97747 * 18 17 16 32 32 H 1.09001 * 110.47659 * 203.59439 * 19 18 17 33 33 H 1.09000 * 110.59498 * 81.01820 * 19 18 17 34 34 H 1.09000 * 110.06684 * 263.32356 * 20 16 13 35 35 H 1.08995 * 110.06961 * 24.85373 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 1 1.6223 1.1990 -2.1954 15 6 3.3271 0.1578 -3.2358 16 6 1.9958 -0.3892 -3.7417 17 6 1.2287 0.3237 -4.8691 18 6 1.1120 -0.7488 -5.9818 19 6 0.8816 -2.0536 -5.1789 20 6 1.7810 -1.8967 -3.9340 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 0.7089 1.1613 3.4844 25 1 1.4495 -1.4979 -1.4101 26 1 3.6853 1.0915 -3.6695 27 1 4.0995 -0.5636 -2.9688 28 1 0.2397 0.6270 -4.5258 29 1 1.7908 1.1862 -5.2275 30 1 2.0349 -0.8085 -6.5589 31 1 0.2634 -0.5419 -6.6340 32 1 1.1881 -2.9206 -5.7641 33 1 -0.1642 -2.1433 -4.8850 34 1 2.7376 -2.3927 -4.0986 35 1 1.2860 -2.3186 -3.0594 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307604516.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:01 Heat of formation + Delta-G solvation = 6.858527 kcal Electronic energy + Delta-G solvation = -13973.699740 eV Core-core repulsion = 11778.421612 eV Total energy + Delta-G solvation = -2195.278128 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.00279 -35.55969 -33.52412 -31.43064 -28.63993 -27.27564 -25.11521 -25.06910 -21.20058 -20.73131 -19.71782 -18.31457 -16.35606 -15.46481 -15.12598 -14.80445 -14.35875 -13.24676 -13.09503 -12.79078 -12.28628 -12.14282 -11.96577 -11.42716 -11.00795 -10.94234 -10.91945 -10.79853 -10.69654 -10.52528 -10.45629 -10.11129 -9.95678 -9.87288 -9.11780 -8.86715 -8.33552 -7.13303 -5.96415 -3.99575 3.34632 3.40464 3.44760 4.25062 4.44649 4.66079 4.85336 5.02340 5.22888 5.30219 5.35282 5.51839 5.62040 5.75992 5.88578 5.94962 6.03426 6.11090 6.18549 6.21845 6.31415 6.38791 6.44859 6.51786 6.65682 6.73083 6.87891 7.12922 7.41694 7.76482 7.92310 8.31357 8.56323 8.65146 9.07584 9.65631 11.10796 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057233 B = 0.006769 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.112729 B = 4135.453846 C = 4190.415634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.652 5.652 13 C 0.049 3.951 14 H 0.089 0.911 15 C -0.164 4.164 16 C -0.151 4.151 17 C -0.087 4.087 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.083 4.083 21 H 0.027 0.973 22 H 0.088 0.912 23 H 0.005 0.995 24 H 0.259 0.741 25 H 0.327 0.673 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -2.375 -13.491 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.282 5.282 13 C -0.063 4.063 14 H 0.107 0.893 15 C -0.203 4.203 16 C -0.153 4.153 17 C -0.125 4.125 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.121 4.121 21 H 0.046 0.954 22 H 0.107 0.893 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.147 0.853 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.313 -2.201 -13.143 13.330 hybrid contribution -0.626 -0.236 0.709 0.975 sum -0.313 -2.437 -12.434 12.675 Atomic orbital electron populations 1.22448 1.00639 0.99147 1.00496 1.19248 0.89610 0.94438 0.86262 0.94737 1.21149 1.30158 1.12441 0.89618 0.91977 1.24946 0.95335 0.95229 0.99031 1.69887 1.37353 1.23238 1.23316 0.86498 0.78447 0.80005 0.82425 1.20756 1.21422 1.19952 1.60583 1.57022 1.08360 1.02238 1.22449 0.99817 0.97134 0.86912 0.89302 1.23192 0.91529 1.01776 1.03781 1.22088 1.01346 0.95230 0.96615 1.21859 0.99534 0.97120 0.93983 1.22450 1.00954 0.95291 0.97117 1.22347 0.99806 0.97350 0.96523 1.21476 0.99413 0.93736 0.97490 0.95429 0.89288 0.97584 0.93085 0.85255 0.89774 0.88779 0.91660 0.92053 0.91745 0.92085 0.92065 0.91857 0.91830 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.44 2.47 -68.86 -0.17 5.27 16 3 H 0.03 0.98 7.73 -51.93 -0.40 0.57 16 4 C -0.49 -13.93 8.84 -34.44 -0.30 -14.24 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -26.00 11.32 55.43 0.63 -25.37 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.65 -14.25 6.37 -101.14 -0.64 -14.89 16 13 C 0.05 0.91 5.83 -67.90 -0.40 0.52 16 14 H 0.09 1.75 7.77 -51.93 -0.40 1.34 16 15 C -0.16 -2.68 10.16 -26.91 -0.27 -2.95 16 16 C -0.15 -2.31 2.46 -154.25 -0.38 -2.69 16 17 C -0.09 -1.14 6.58 -25.23 -0.17 -1.30 16 18 C -0.12 -1.35 6.91 -24.67 -0.17 -1.52 16 19 C -0.12 -1.44 6.84 -24.99 -0.17 -1.61 16 20 C -0.08 -1.18 6.31 -25.76 -0.16 -1.34 16 21 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 22 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 23 H 0.01 0.12 8.07 -51.93 -0.42 -0.30 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.33 6.83 6.51 -39.29 -0.26 6.58 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.02 6.37 -51.93 -0.33 0.69 16 LS Contribution 279.22 15.07 4.21 4.21 Total: -1.00 -28.36 279.22 -8.68 -37.04 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.90 Total: 4.48 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -1.95 Total: -22.19 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.02 Total: -40.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.36 -8.68 -37.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604516.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.902 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds