Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47150 * 2 1 4 4 C 1.50701 * 109.46860 * 240.00095 * 2 1 3 5 5 H 1.08009 * 119.99595 * 245.45898 * 4 2 1 6 6 C 1.37874 * 120.00455 * 65.46500 * 4 2 1 7 7 N 1.31516 * 119.99757 * 9.54043 * 6 4 2 8 8 Si 1.86796 * 120.00290 * 189.54218 * 6 4 2 9 9 H 1.48496 * 109.47379 * 84.99570 * 8 6 4 10 10 H 1.48502 * 109.47133 * 204.99467 * 8 6 4 11 11 H 1.48503 * 109.46935 * 324.99134 * 8 6 4 12 12 N 1.46899 * 109.46942 * 120.00322 * 2 1 3 13 13 C 1.46900 * 110.99953 * 274.99943 * 12 2 1 14 14 H 1.09002 * 115.55463 * 350.72657 * 13 12 2 15 15 C 1.53089 * 117.51129 * 136.51252 * 13 12 2 16 16 C 1.52547 * 59.89141 * 107.45559 * 15 13 12 17 17 C 1.53480 * 121.08579 * 249.56927 * 16 15 13 18 18 C 1.54384 * 106.40340 * 215.94575 * 17 16 15 19 19 C 1.54927 * 104.21892 * 336.43382 * 18 17 16 20 20 C 1.53875 * 120.82505 * 110.20906 * 16 15 13 21 21 H 1.09005 * 109.47185 * 183.69383 * 1 2 3 22 22 H 1.08998 * 109.47091 * 303.69705 * 1 2 3 23 23 H 1.09002 * 109.46986 * 63.69768 * 1 2 3 24 24 H 0.96997 * 120.00082 * 180.02562 * 7 6 4 25 25 H 1.00905 * 111.00012 * 151.04731 * 12 2 1 26 26 H 1.08995 * 117.51284 * 359.97438 * 15 13 12 27 27 H 1.09005 * 117.50896 * 214.91307 * 15 13 12 28 28 H 1.09003 * 110.06691 * 335.17555 * 17 16 15 29 29 H 1.08993 * 110.07264 * 96.70714 * 17 16 15 30 30 H 1.08997 * 110.48231 * 95.11199 * 18 17 16 31 31 H 1.08996 * 110.48186 * 217.75056 * 18 17 16 32 32 H 1.09006 * 110.74501 * 279.39449 * 19 18 17 33 33 H 1.09003 * 110.90180 * 156.13561 * 19 18 17 34 34 H 1.08993 * 110.51123 * 286.27312 * 20 16 15 35 35 H 1.09001 * 110.50844 * 48.97967 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.2991 1.0355 -2.5936 8 14 2.1764 -1.1779 -4.0102 9 1 1.0246 -2.0610 -4.3244 10 1 2.4231 -0.2611 -5.1521 11 1 3.3850 -2.0069 -3.7709 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.9208 1.2758 2.1177 15 6 1.5705 -0.2957 3.6934 16 6 3.0673 -0.1130 3.4627 17 6 4.0058 -1.3225 3.3533 18 6 5.3337 -0.9059 4.0214 19 6 5.3337 0.6411 3.9362 20 6 3.8466 0.9992 4.1862 21 1 -0.3634 -1.0256 0.0662 22 1 -0.3633 0.5701 0.8550 23 1 -0.3633 0.4554 -0.9213 24 1 1.1315 1.4104 -3.4723 25 1 2.9173 -1.1206 1.0287 26 1 1.1868 -1.3153 3.7276 27 1 1.0717 0.4168 4.3504 28 1 3.5764 -2.1775 3.8757 29 1 4.1758 -1.5705 2.3057 30 1 5.3556 -1.2304 5.0617 31 1 6.1816 -1.3179 3.4743 32 1 5.6497 0.9733 2.9472 33 1 5.9700 1.0731 4.7085 34 1 3.6106 1.9726 3.7564 35 1 3.6255 0.9882 5.2535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307604518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = 4.364056 kcal Electronic energy + Delta-G solvation = -13997.367580 eV Core-core repulsion = 11801.981284 eV Total energy + Delta-G solvation = -2195.386296 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.97339 -35.45005 -33.49245 -31.40353 -28.62201 -27.55070 -25.28138 -24.84347 -21.12084 -20.62349 -19.65305 -18.27016 -16.48848 -15.45077 -15.08101 -14.72159 -14.07062 -13.61294 -13.08538 -13.02230 -12.30809 -12.09782 -11.76920 -11.39534 -10.95901 -10.90539 -10.86975 -10.68226 -10.58075 -10.54057 -10.42258 -10.26451 -10.04767 -9.75740 -9.11740 -8.81843 -8.40927 -7.17031 -6.05553 -4.07719 3.30980 3.37047 3.39644 4.26642 4.40598 4.68919 4.89283 5.05949 5.22579 5.28813 5.34033 5.55513 5.64180 5.80596 5.96379 5.99372 6.03165 6.15322 6.20571 6.23500 6.33544 6.40587 6.49188 6.53084 6.67522 6.86788 7.14476 7.20991 7.46264 7.79508 7.86991 8.17806 8.38890 8.69427 9.03409 9.57162 11.03715 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039842 B = 0.007679 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.615011 B = 3645.424799 C = 3952.168219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.211 3.789 3 H 0.010 0.990 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.657 5.657 13 C 0.051 3.949 14 H 0.090 0.910 15 C -0.167 4.167 16 C -0.151 4.151 17 C -0.084 4.084 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.087 4.087 21 H 0.033 0.967 22 H 0.010 0.990 23 H 0.062 0.938 24 H 0.261 0.739 25 H 0.334 0.666 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.073 -1.107 11.518 12.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 H 0.028 0.972 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.289 5.289 13 C -0.061 4.061 14 H 0.107 0.893 15 C -0.206 4.206 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.124 4.124 21 H 0.052 0.948 22 H 0.029 0.971 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.402 -1.228 11.500 12.375 hybrid contribution 0.776 0.062 -1.117 1.361 sum 5.179 -1.166 10.383 11.662 Atomic orbital electron populations 1.21635 0.98215 0.98819 0.98948 1.19165 0.92188 0.92900 0.85354 0.97221 1.21221 1.36025 1.08184 0.90671 0.92255 1.24911 0.95215 0.94613 0.99028 1.69973 1.44883 1.13961 1.23833 0.86594 0.78757 0.80058 0.82483 1.20480 1.21363 1.19970 1.60501 1.31398 1.31566 1.05434 1.22572 1.00175 0.95691 0.87652 0.89282 1.23137 0.94372 1.02336 1.00720 1.22092 0.90954 0.97596 1.04565 1.21484 0.93642 0.96109 1.00935 1.22331 0.97533 0.95837 1.00193 1.22462 0.96257 0.95874 1.01437 1.21848 0.94236 0.97139 0.99208 0.94766 0.97133 0.91945 0.92891 0.84487 0.88873 0.89821 0.91940 0.91289 0.92077 0.91945 0.91436 0.92086 0.91989 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.28 37.16 0.34 -2.61 16 2 C 0.21 5.45 2.43 -68.87 -0.17 5.28 16 3 H 0.01 0.29 7.52 -51.93 -0.39 -0.11 16 4 C -0.52 -14.51 8.48 -34.44 -0.29 -14.80 16 5 H 0.06 1.63 7.69 -52.48 -0.40 1.22 16 6 C 0.06 1.81 5.17 -17.82 -0.09 1.72 16 7 N -0.89 -25.77 12.16 55.43 0.67 -25.09 16 8 Si 0.89 21.43 29.55 -169.99 -5.02 16.41 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.66 -14.40 6.44 -101.14 -0.65 -15.05 16 13 C 0.05 0.96 5.92 -67.89 -0.40 0.56 16 14 H 0.09 1.79 7.60 -51.93 -0.39 1.39 16 15 C -0.17 -2.69 10.19 -26.92 -0.27 -2.97 16 16 C -0.15 -2.34 2.46 -154.26 -0.38 -2.71 16 17 C -0.08 -1.21 6.31 -25.76 -0.16 -1.38 16 18 C -0.12 -1.47 6.84 -24.99 -0.17 -1.64 16 19 C -0.12 -1.51 6.91 -24.67 -0.17 -1.68 16 20 C -0.09 -1.16 6.58 -25.23 -0.17 -1.32 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.01 0.23 8.12 -51.93 -0.42 -0.20 16 23 H 0.06 1.68 6.83 -51.93 -0.35 1.33 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.33 7.22 6.29 -39.29 -0.25 6.97 16 26 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.09 6.37 -51.93 -0.33 0.76 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 280.16 15.07 4.22 4.22 Total: -1.00 -28.27 280.16 -8.61 -36.88 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.90 Total: 4.19 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -1.93 Total: -21.55 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.02 Total: -40.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.27 -8.61 -36.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.246 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds