Wall clock time and date at job start Mon Mar 30 2020 02:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47150 * 2 1 4 4 C 1.50701 * 109.46860 * 240.00095 * 2 1 3 5 5 H 1.08009 * 119.99595 * 245.45898 * 4 2 1 6 6 C 1.37874 * 120.00455 * 65.46500 * 4 2 1 7 7 N 1.31516 * 119.99757 * 9.54043 * 6 4 2 8 8 Si 1.86796 * 120.00290 * 189.54218 * 6 4 2 9 9 H 1.48496 * 109.47379 * 84.99570 * 8 6 4 10 10 H 1.48502 * 109.47133 * 204.99467 * 8 6 4 11 11 H 1.48503 * 109.46935 * 324.99134 * 8 6 4 12 12 N 1.46899 * 109.46942 * 120.00322 * 2 1 3 13 13 C 1.46900 * 110.99953 * 274.99943 * 12 2 1 14 14 H 1.09002 * 115.55463 * 350.72657 * 13 12 2 15 15 C 1.53089 * 117.51129 * 136.51252 * 13 12 2 16 16 C 1.52547 * 59.89141 * 107.45559 * 15 13 12 17 17 C 1.53480 * 121.08579 * 249.56927 * 16 15 13 18 18 C 1.54384 * 106.40340 * 215.94575 * 17 16 15 19 19 C 1.54927 * 104.21892 * 336.43382 * 18 17 16 20 20 C 1.53875 * 120.82505 * 110.20906 * 16 15 13 21 21 H 1.09005 * 109.47185 * 183.69383 * 1 2 3 22 22 H 1.08998 * 109.47091 * 303.69705 * 1 2 3 23 23 H 1.09002 * 109.46986 * 63.69768 * 1 2 3 24 24 H 0.96997 * 120.00082 * 180.02562 * 7 6 4 25 25 H 1.00905 * 111.00012 * 151.04731 * 12 2 1 26 26 H 1.08995 * 117.51284 * 359.97438 * 15 13 12 27 27 H 1.09005 * 117.50896 * 214.91307 * 15 13 12 28 28 H 1.09003 * 110.06691 * 335.17555 * 17 16 15 29 29 H 1.08993 * 110.07264 * 96.70714 * 17 16 15 30 30 H 1.08997 * 110.48231 * 95.11199 * 18 17 16 31 31 H 1.08996 * 110.48186 * 217.75056 * 18 17 16 32 32 H 1.09006 * 110.74501 * 279.39449 * 19 18 17 33 33 H 1.09003 * 110.90180 * 156.13561 * 19 18 17 34 34 H 1.08993 * 110.51123 * 286.27312 * 20 16 15 35 35 H 1.09001 * 110.50844 * 48.97967 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7946 -0.1774 -2.4796 7 7 1.2991 1.0355 -2.5936 8 14 2.1764 -1.1779 -4.0102 9 1 1.0246 -2.0610 -4.3244 10 1 2.4231 -0.2611 -5.1521 11 1 3.3850 -2.0069 -3.7709 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.9208 1.2758 2.1177 15 6 1.5705 -0.2957 3.6934 16 6 3.0673 -0.1130 3.4627 17 6 4.0058 -1.3225 3.3533 18 6 5.3337 -0.9059 4.0214 19 6 5.3337 0.6411 3.9362 20 6 3.8466 0.9992 4.1862 21 1 -0.3634 -1.0256 0.0662 22 1 -0.3633 0.5701 0.8550 23 1 -0.3633 0.4554 -0.9213 24 1 1.1315 1.4104 -3.4723 25 1 2.9173 -1.1206 1.0287 26 1 1.1868 -1.3153 3.7276 27 1 1.0717 0.4168 4.3504 28 1 3.5764 -2.1775 3.8757 29 1 4.1758 -1.5705 2.3057 30 1 5.3556 -1.2304 5.0617 31 1 6.1816 -1.3179 3.4743 32 1 5.6497 0.9733 2.9472 33 1 5.9700 1.0731 4.7085 34 1 3.6106 1.9726 3.7564 35 1 3.6255 0.9882 5.2535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307604518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:06 Heat of formation + Delta-G solvation = -11.926170 kcal Electronic energy + Delta-G solvation = -13998.073978 eV Core-core repulsion = 11801.981284 eV Total energy + Delta-G solvation = -2196.092694 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26280 -37.14795 -35.09300 -33.29119 -29.88129 -29.24593 -27.27632 -26.14685 -22.78144 -21.85258 -21.26647 -19.62698 -18.41195 -16.92226 -16.71097 -16.16553 -15.60049 -15.32402 -14.76055 -14.16378 -13.84263 -13.66455 -13.44543 -13.01951 -12.80318 -12.53900 -12.42543 -12.33863 -12.04171 -11.92171 -11.89523 -11.68991 -11.39670 -11.30845 -10.98076 -10.53958 -10.39808 -8.92037 -8.19701 -6.29780 1.40152 1.42445 1.51347 2.39687 2.93418 3.12001 3.35614 3.71069 3.80221 4.05882 4.19505 4.37802 4.49750 4.60325 4.74212 4.80527 4.85695 4.92269 4.96960 5.03268 5.08758 5.12985 5.15325 5.17869 5.22598 5.31902 5.43323 5.45676 5.53453 5.65105 5.79337 6.12146 6.44643 6.77857 6.97477 7.39944 8.89563 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039842 B = 0.007679 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.615011 B = 3645.424799 C = 3952.168219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.217 3.783 3 H -0.028 1.028 4 C -0.542 4.542 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.653 5.653 13 C 0.011 3.989 14 H 0.070 0.930 15 C -0.151 4.151 16 C -0.133 4.133 17 C -0.089 4.089 18 C -0.115 4.115 19 C -0.122 4.122 20 C -0.087 4.087 21 H 0.035 0.965 22 H 0.024 0.976 23 H 0.038 0.962 24 H 0.264 0.736 25 H 0.332 0.668 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -2.015 12.801 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 H -0.010 1.010 4 C -0.580 4.580 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.284 5.284 13 C -0.100 4.100 14 H 0.088 0.912 15 C -0.189 4.189 16 C -0.135 4.135 17 C -0.127 4.127 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.125 4.125 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.152 0.848 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.283 -2.140 12.807 14.018 hybrid contribution 0.505 0.379 -1.458 1.589 sum 5.788 -1.761 11.349 12.861 Atomic orbital electron populations 1.21455 0.97801 0.98784 0.98305 1.18941 0.92487 0.90989 0.86693 1.01022 1.21539 1.36347 1.08302 0.91836 0.92356 1.25742 0.94997 0.95513 1.02129 1.70094 1.45700 1.15380 1.24628 0.85534 0.78843 0.78555 0.78503 1.19883 1.20861 1.19115 1.60449 1.31375 1.31801 1.04782 1.22543 1.05164 0.94390 0.87914 0.91221 1.23167 0.95203 1.02467 0.98061 1.22237 0.91072 0.98781 1.01380 1.21558 0.94936 0.95946 1.00233 1.22327 0.96171 0.95547 1.01209 1.22478 0.95799 0.96180 1.01490 1.21920 0.94617 0.95821 1.00111 0.94556 0.95716 0.94270 0.92745 0.84778 0.88995 0.87851 0.91123 0.93212 0.90006 0.91238 0.93011 0.89545 0.92737 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.38 9.28 71.98 0.67 -4.71 16 2 C 0.22 11.56 2.43 44.17 0.11 11.67 16 3 H -0.03 -1.66 7.52 -2.39 -0.02 -1.68 16 4 C -0.54 -30.65 8.48 25.60 0.22 -30.43 16 5 H 0.06 3.23 7.69 -2.91 -0.02 3.21 16 6 C 0.02 0.89 5.17 84.65 0.44 1.33 16 7 N -0.92 -54.42 12.16 21.45 0.26 -54.16 16 8 Si 0.96 44.12 29.55 68.60 2.03 46.14 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 N -0.65 -29.20 6.44 -473.90 -3.05 -32.25 16 13 C 0.01 0.42 5.92 44.80 0.27 0.69 16 14 H 0.07 2.91 7.60 -2.39 -0.02 2.90 16 15 C -0.15 -4.63 10.19 30.47 0.31 -4.32 16 16 C -0.13 -3.96 2.46 -52.02 -0.13 -4.09 16 17 C -0.09 -2.43 6.31 31.23 0.20 -2.23 16 18 C -0.12 -2.46 6.84 31.72 0.22 -2.25 16 19 C -0.12 -2.69 6.91 31.93 0.22 -2.47 16 20 C -0.09 -2.13 6.58 31.57 0.21 -1.93 16 21 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 22 H 0.02 1.14 8.12 -2.39 -0.02 1.12 16 23 H 0.04 2.15 6.83 -2.39 -0.02 2.14 16 24 H 0.26 14.75 8.31 -92.71 -0.77 13.97 16 25 H 0.33 14.68 6.29 -89.69 -0.56 14.12 16 26 H 0.09 2.86 8.14 -2.39 -0.02 2.85 16 27 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.55 6.37 -2.39 -0.02 1.53 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.42 8.11 -2.39 -0.02 1.40 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -60.91 280.16 2.44 -58.48 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.48 Total: 20.53 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 2.72 Total: -38.74 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.79 Total: -86.41 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -60.91 2.44 -58.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.551 kcal (2) G-P(sol) polarization free energy of solvation -60.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds