Wall clock time and date at job start Mon Mar 30 2020 03:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29576 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47382 * 299.99997 * 3 2 1 6 6 H 1.48500 * 109.47378 * 59.99899 * 3 2 1 7 7 C 1.46386 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99571 * 190.73580 * 7 2 1 9 9 C 1.41188 * 119.99915 * 10.73677 * 7 2 1 10 10 C 1.41070 * 121.04336 * 31.71828 * 9 7 2 11 11 C 1.38725 * 118.75282 * 180.23158 * 10 9 7 12 12 O 1.35692 * 119.54853 * 179.73748 * 11 10 9 13 13 N 1.32183 * 120.90167 * 359.46832 * 11 10 9 14 14 C 1.31886 * 122.35320 * 0.26916 * 13 11 10 15 15 C 1.37866 * 121.13613 * 0.02562 * 14 13 11 16 16 N 1.48016 * 120.52937 * 179.97438 * 15 14 13 17 17 O 1.31698 * 120.00220 * 6.12114 * 16 15 14 18 18 O 1.31698 * 119.99910 * 186.12259 * 16 15 14 19 19 H 0.97002 * 119.99973 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.62031 * 359.97194 * 10 9 7 21 21 H 0.96695 * 114.00187 * 269.73250 * 12 11 10 22 22 H 1.08000 * 119.43108 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2297 1.6177 0.0000 4 1 3.6897 1.3465 -0.0006 5 1 1.8710 2.3965 -1.2125 6 1 1.8710 2.3965 1.2125 7 6 2.0277 -1.2678 -0.0006 8 1 3.0935 -1.2759 0.1737 9 6 1.3402 -2.4797 -0.2289 10 6 0.2060 -2.5260 -1.0664 11 6 -0.4360 -3.7414 -1.2537 12 8 -1.5318 -3.8034 -2.0516 13 7 0.0082 -4.8409 -0.6696 14 6 1.0673 -4.8440 0.1163 15 6 1.7703 -3.6855 0.3698 16 7 2.9568 -3.7043 1.2545 17 8 3.4207 -4.8497 1.7098 18 8 3.5487 -2.5756 1.5864 19 1 -0.4850 0.8401 0.0004 20 1 -0.1582 -1.6312 -1.5493 21 1 -2.3666 -3.6598 -1.5853 22 1 1.3893 -5.7701 0.5691 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307650763.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:14 Heat of formation + Delta-G solvation = -4.694732 kcal Electronic energy + Delta-G solvation = -13400.219848 eV Core-core repulsion = 10731.515538 eV Total energy + Delta-G solvation = -2668.704310 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.45211 -37.34300 -35.99814 -34.77795 -32.86391 -31.56353 -29.64924 -26.80955 -24.86592 -22.35236 -21.35383 -18.89292 -17.51738 -16.95537 -16.64684 -15.81048 -15.14434 -14.90955 -14.44059 -13.60904 -13.31325 -12.56857 -12.03715 -11.94055 -11.72128 -11.66881 -11.01974 -10.71821 -10.13299 -9.78053 -9.57401 -9.31370 -8.84198 -8.61101 -8.28782 -7.77356 -5.39753 0.71821 2.17686 2.35062 2.66013 2.76229 2.77391 2.80821 3.37704 3.77337 4.42029 4.74610 5.49657 5.85744 5.88406 6.08335 6.33229 6.57831 6.75564 7.02080 7.22842 7.56943 7.78494 7.81352 8.21439 8.42724 8.77713 9.07245 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.015452 C = 0.009740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.254339 B = 1811.675469 C = 2873.979646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.056 3.944 3 Si 0.940 3.060 4 H -0.242 1.242 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.325 4.325 8 H 0.134 0.866 9 C 0.105 3.895 10 C -0.187 4.187 11 C 0.283 3.717 12 O -0.490 6.490 13 N -0.563 5.563 14 C 0.224 3.776 15 C -0.159 4.159 16 N 0.044 4.956 17 O -0.322 6.322 18 O -0.255 6.255 19 H 0.306 0.694 20 H 0.141 0.859 21 H 0.389 0.611 22 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 4.276 -2.128 5.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.165 1.165 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.353 4.353 8 H 0.152 0.848 9 C 0.097 3.903 10 C -0.210 4.210 11 C 0.121 3.879 12 O -0.296 6.296 13 N -0.290 5.290 14 C 0.054 3.946 15 C -0.263 4.263 16 N 0.475 4.525 17 O -0.474 6.474 18 O -0.423 6.423 19 H 0.119 0.881 20 H 0.158 0.842 21 H 0.244 0.756 22 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.712 3.498 -3.002 5.918 hybrid contribution 0.416 1.444 0.738 1.674 sum -3.296 4.941 -2.263 6.356 Atomic orbital electron populations 1.69094 1.09332 1.32844 1.22135 1.28030 0.95027 1.03588 0.90912 0.85669 0.81830 0.76893 0.79555 1.16453 1.18621 1.18478 1.22472 0.98084 0.88146 1.26575 0.84848 1.17290 0.91481 0.91099 0.90418 1.22217 0.99757 0.97107 1.01961 1.19022 0.89445 0.88502 0.90950 1.84692 1.15512 1.94522 1.34904 1.67021 1.16463 1.31105 1.14380 1.21789 0.87318 0.95882 0.89588 1.21298 0.96326 0.98918 1.09786 1.49703 1.01607 1.01394 0.99792 1.96110 1.72042 1.14874 1.64384 1.96073 1.62020 1.16624 1.67612 0.88080 0.84164 0.75595 0.82588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -14.45 11.29 55.98 0.63 -13.82 14 2 C 0.06 1.15 5.43 -15.23 -0.08 1.07 14 3 Si 0.94 15.22 29.65 -169.99 -5.04 10.18 14 4 H -0.24 -4.04 7.11 56.52 0.40 -3.64 14 5 H -0.26 -4.01 7.11 56.52 0.40 -3.61 14 6 H -0.26 -4.14 7.11 56.52 0.40 -3.74 14 7 C -0.33 -7.62 8.11 -35.19 -0.29 -7.90 14 8 H 0.13 3.22 5.81 -52.49 -0.30 2.91 14 9 C 0.10 2.55 5.57 -106.53 -0.59 1.96 14 10 C -0.19 -4.24 8.76 -38.33 -0.34 -4.57 14 11 C 0.28 6.19 7.73 -17.22 -0.13 6.06 14 12 O -0.49 -9.16 13.56 -18.78 -0.25 -9.41 14 13 N -0.56 -12.72 10.33 -13.45 -0.14 -12.86 14 14 C 0.22 5.10 10.72 -17.66 -0.19 4.91 14 15 C -0.16 -3.96 6.96 -78.91 -0.55 -4.50 14 16 N 0.04 1.17 4.98 34.47 0.17 1.34 14 17 O -0.32 -8.54 19.20 -31.57 -0.61 -9.14 14 18 O -0.25 -6.86 16.36 -31.57 -0.52 -7.38 14 19 H 0.31 5.29 8.27 -40.82 -0.34 4.95 14 20 H 0.14 3.08 6.63 -52.49 -0.35 2.73 14 21 H 0.39 5.25 9.06 45.56 0.41 5.66 14 22 H 0.16 3.23 7.59 -52.49 -0.40 2.83 14 LS Contribution 217.33 15.07 3.28 3.28 Total: -1.00 -28.29 217.33 -4.42 -32.71 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.23 Total: 8.09 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.17 Total: -2.98 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.66 Total: -25.34 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -1.38 Total: -25.94 kcal Atomic # 14 Polarization: 15.22 SS G_CDS: -5.04 Total: 10.18 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.29 -4.42 -32.71 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307650763.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.015 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds