Wall clock time and date at job start Mon Mar 30 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29576 * 1 3 3 Si 1.86798 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47382 * 299.99997 * 3 2 1 6 6 H 1.48500 * 109.47378 * 59.99899 * 3 2 1 7 7 C 1.46386 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99571 * 190.73580 * 7 2 1 9 9 C 1.41188 * 119.99915 * 10.73677 * 7 2 1 10 10 C 1.41070 * 121.04336 * 31.71828 * 9 7 2 11 11 C 1.38725 * 118.75282 * 180.23158 * 10 9 7 12 12 O 1.35692 * 119.54853 * 179.73748 * 11 10 9 13 13 N 1.32183 * 120.90167 * 359.46832 * 11 10 9 14 14 C 1.31886 * 122.35320 * 0.26916 * 13 11 10 15 15 C 1.37866 * 121.13613 * 0.02562 * 14 13 11 16 16 N 1.48016 * 120.52937 * 179.97438 * 15 14 13 17 17 O 1.31698 * 120.00220 * 6.12114 * 16 15 14 18 18 O 1.31698 * 119.99910 * 186.12259 * 16 15 14 19 19 H 0.97002 * 119.99973 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.62031 * 359.97194 * 10 9 7 21 21 H 0.96695 * 114.00187 * 269.73250 * 12 11 10 22 22 H 1.08000 * 119.43108 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2297 1.6177 0.0000 4 1 3.6897 1.3465 -0.0006 5 1 1.8710 2.3965 -1.2125 6 1 1.8710 2.3965 1.2125 7 6 2.0277 -1.2678 -0.0006 8 1 3.0935 -1.2759 0.1737 9 6 1.3402 -2.4797 -0.2289 10 6 0.2060 -2.5260 -1.0664 11 6 -0.4360 -3.7414 -1.2537 12 8 -1.5318 -3.8034 -2.0516 13 7 0.0082 -4.8409 -0.6696 14 6 1.0673 -4.8440 0.1163 15 6 1.7703 -3.6855 0.3698 16 7 2.9568 -3.7043 1.2545 17 8 3.4207 -4.8497 1.7098 18 8 3.5487 -2.5756 1.5864 19 1 -0.4850 0.8401 0.0004 20 1 -0.1582 -1.6312 -1.5493 21 1 -2.3666 -3.6598 -1.5853 22 1 1.3893 -5.7701 0.5691 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307650763.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:13 Heat of formation + Delta-G solvation = -26.577285 kcal Electronic energy + Delta-G solvation = -13401.168747 eV Core-core repulsion = 10731.515538 eV Total energy + Delta-G solvation = -2669.653208 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.21292 -39.13430 -37.66950 -36.50844 -34.76345 -33.35777 -31.43573 -28.62670 -26.72560 -24.12621 -23.13814 -20.58262 -19.25941 -18.82425 -18.44121 -17.49525 -16.82395 -16.55342 -16.28654 -15.33627 -14.81453 -14.28522 -13.77747 -13.61970 -13.46517 -13.09520 -12.61152 -12.06341 -11.74531 -11.67681 -11.40080 -11.31686 -10.64116 -10.41597 -10.07629 -9.40970 -7.23013 -1.21238 0.46923 0.53089 0.95526 1.29817 1.40748 1.52266 2.06177 2.15440 2.77082 2.96816 3.77265 4.05348 4.11614 4.41384 4.59534 4.79253 4.98118 5.30674 5.39622 5.79269 5.93346 5.98822 6.50734 6.74960 7.00875 7.48644 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.015452 C = 0.009740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.254339 B = 1811.675469 C = 2873.979646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.023 3.977 3 Si 1.007 2.993 4 H -0.256 1.256 5 H -0.238 1.238 6 H -0.250 1.250 7 C -0.304 4.304 8 H 0.122 0.878 9 C 0.062 3.938 10 C -0.181 4.181 11 C 0.278 3.722 12 O -0.487 6.487 13 N -0.556 5.556 14 C 0.225 3.775 15 C -0.164 4.164 16 N 0.045 4.955 17 O -0.367 6.367 18 O -0.310 6.310 19 H 0.329 0.671 20 H 0.148 0.852 21 H 0.413 0.587 22 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 6.308 -3.222 8.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.209 4.209 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.161 1.161 6 H -0.174 1.174 7 C -0.332 4.332 8 H 0.140 0.860 9 C 0.054 3.946 10 C -0.204 4.204 11 C 0.117 3.883 12 O -0.296 6.296 13 N -0.283 5.283 14 C 0.053 3.947 15 C -0.273 4.273 16 N 0.455 4.545 17 O -0.507 6.507 18 O -0.463 6.463 19 H 0.143 0.857 20 H 0.166 0.834 21 H 0.273 0.727 22 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.284 5.519 -4.016 8.632 hybrid contribution 0.604 1.009 0.892 1.476 sum -4.680 6.528 -3.124 8.618 Atomic orbital electron populations 1.69002 1.10101 1.35370 1.18775 1.28840 0.95929 1.05285 0.90798 0.84749 0.79483 0.72676 0.80828 1.17932 1.16090 1.17363 1.22913 0.98008 0.89756 1.22480 0.86019 1.17619 0.93177 0.91420 0.92359 1.22229 0.98919 0.97743 1.01547 1.19077 0.90343 0.88035 0.90867 1.84643 1.15928 1.94381 1.34661 1.67126 1.15929 1.31447 1.13811 1.22039 0.87091 0.96016 0.89578 1.21638 0.95886 0.99977 1.09813 1.49742 1.02517 1.00983 1.01210 1.96057 1.73186 1.15045 1.66414 1.96016 1.63322 1.16916 1.70030 0.85688 0.83410 0.72730 0.81041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -26.49 11.29 23.18 0.26 -26.23 14 2 C 0.02 0.88 5.43 87.15 0.47 1.35 14 3 Si 1.01 28.47 29.65 68.60 2.03 30.50 14 4 H -0.26 -7.83 7.11 99.48 0.71 -7.12 14 5 H -0.24 -5.89 7.11 99.48 0.71 -5.18 14 6 H -0.25 -6.71 7.11 99.48 0.71 -6.00 14 7 C -0.30 -14.04 8.11 25.12 0.20 -13.83 14 8 H 0.12 5.94 5.81 -2.91 -0.02 5.93 14 9 C 0.06 2.98 5.57 -21.10 -0.12 2.86 14 10 C -0.18 -7.90 8.76 23.08 0.20 -7.69 14 11 C 0.28 11.58 7.73 84.76 0.66 12.24 14 12 O -0.49 -16.71 13.56 -90.11 -1.22 -17.93 14 13 N -0.56 -24.31 10.33 -309.36 -3.20 -27.51 14 14 C 0.22 10.20 10.72 84.60 0.91 11.11 14 15 C -0.16 -8.29 6.96 37.05 0.26 -8.03 14 16 N 0.04 2.48 4.98 -44.87 -0.22 2.25 14 17 O -0.37 -20.45 19.20 3.52 0.07 -20.38 14 18 O -0.31 -17.47 16.36 3.52 0.06 -17.41 14 19 H 0.33 9.98 8.27 -92.71 -0.77 9.21 14 20 H 0.15 6.10 6.63 -2.91 -0.02 6.08 14 21 H 0.41 9.71 9.06 -74.06 -0.67 9.04 14 22 H 0.17 7.13 7.59 -2.91 -0.02 7.10 14 Total: -1.00 -60.64 217.33 0.99 -59.66 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.62 Total: 19.05 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 2.58 Total: -2.00 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -3.16 Total: -51.49 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -1.10 Total: -55.72 kcal Atomic # 14 Polarization: 28.47 SS G_CDS: 2.03 Total: 30.50 kcal Total: -60.64 0.99 -59.66 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307650763.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.078 kcal (2) G-P(sol) polarization free energy of solvation -60.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds