Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 C 1.50706 * 109.46818 * 119.99772 * 2 1 3 5 5 H 1.08005 * 119.99991 * 114.58655 * 4 2 1 6 6 C 1.37869 * 119.99854 * 294.57677 * 4 2 1 7 7 N 1.31523 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46972 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46884 * 120.00394 * 8 6 4 11 11 H 1.48496 * 109.47070 * 240.00449 * 8 6 4 12 12 N 1.46907 * 109.47138 * 239.99451 * 2 1 3 13 13 C 1.48142 * 110.99741 * 76.05049 * 12 2 1 14 14 C 1.53324 * 85.32763 * 138.61736 * 13 12 2 15 15 H 1.09004 * 111.42294 * 86.81023 * 14 13 12 16 16 C 1.50409 * 115.80636 * 215.31309 * 14 13 12 17 17 C 1.50173 * 115.37277 * 69.50647 * 16 14 13 18 18 C 1.52629 * 110.65867 * 47.04722 * 17 16 14 19 19 C 1.52980 * 108.74924 * 296.05542 * 18 17 16 20 20 C 1.48608 * 110.99906 * 175.05090 * 12 2 1 21 21 H 1.08997 * 114.46922 * 106.53385 * 20 12 2 22 22 H 1.09000 * 109.47074 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47058 * 300.00300 * 1 2 3 24 24 H 1.09001 * 109.46932 * 60.00861 * 1 2 3 25 25 H 0.96999 * 119.99851 * 180.02562 * 7 6 4 26 26 H 1.08993 * 113.89410 * 24.51921 * 13 12 2 27 27 H 1.09002 * 113.88985 * 252.71669 * 13 12 2 28 28 H 1.08996 * 108.47808 * 191.47451 * 16 14 13 29 29 H 1.08999 * 108.47261 * 308.86761 * 16 14 13 30 30 H 1.09002 * 109.31786 * 286.77321 * 17 16 14 31 31 H 1.09001 * 109.33033 * 167.32544 * 17 16 14 32 32 H 1.09001 * 109.58623 * 176.27725 * 18 17 16 33 33 H 1.08999 * 109.71376 * 55.90945 * 18 17 16 34 34 H 1.09004 * 109.50238 * 303.82539 * 19 18 17 35 35 H 1.08993 * 109.50307 * 183.70062 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.5792 -1.6367 1.1339 6 6 1.7939 -0.1777 2.4796 7 7 1.1276 0.9502 2.5973 8 14 2.4170 -1.0578 4.0049 9 1 3.1320 -2.2962 3.6044 10 1 3.3468 -0.1674 4.7451 11 1 1.2682 -1.4093 4.8777 12 7 2.0197 -0.6926 -1.1994 13 6 1.8823 0.1639 -2.4003 14 6 3.2685 -0.3675 -2.7838 15 1 3.1969 -1.3052 -3.3350 16 6 4.1735 0.6090 -3.4836 17 6 4.6787 1.7402 -2.6349 18 6 5.1971 1.2197 -1.2970 19 6 4.0304 0.6011 -0.5246 20 6 3.5004 -0.6097 -1.2951 21 1 4.0204 -1.5399 -1.0666 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 0.9602 1.3251 3.4761 26 1 1.8638 1.2314 -2.1814 27 1 1.0869 -0.1488 -3.0768 28 1 5.0300 0.0635 -3.8796 29 1 3.6292 1.0451 -4.3212 30 1 3.8677 2.4458 -2.4545 31 1 5.4874 2.2505 -3.1580 32 1 5.6192 2.0444 -0.7228 33 1 5.9635 0.4638 -1.4685 34 1 3.2354 1.3387 -0.4141 35 1 4.3732 0.2843 0.4603 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307677200.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = 26.735808 kcal Electronic energy + Delta-G solvation = -14839.892114 eV Core-core repulsion = 12645.475930 eV Total energy + Delta-G solvation = -2194.416185 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40849 -35.05101 -33.20877 -31.02352 -29.75965 -26.33153 -25.39042 -24.20891 -22.49133 -20.95322 -19.22484 -17.18572 -16.32113 -15.42404 -15.10192 -14.46759 -14.24388 -13.50248 -13.18419 -12.93201 -12.23262 -11.94384 -11.75633 -11.32436 -11.15898 -10.89692 -10.72422 -10.66823 -10.57210 -10.37296 -10.17402 -9.99911 -9.74396 -9.38050 -9.01909 -8.73794 -8.42036 -7.41815 -5.99088 -4.00799 3.30396 3.38706 3.43461 4.44025 4.88510 4.95000 5.17149 5.32749 5.44392 5.50151 5.74082 5.76864 5.98503 6.01485 6.14350 6.19661 6.30566 6.35352 6.40213 6.52331 6.57033 6.59445 6.79254 6.85261 6.89259 7.00181 7.11775 7.28560 7.44112 7.58565 7.86345 8.08914 8.32902 8.57250 9.05731 9.62892 11.09286 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.038730 B = 0.011078 C = 0.009803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.781225 B = 2526.925356 C = 2855.477704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.170 3.830 3 H 0.025 0.975 4 C -0.494 4.494 5 H 0.059 0.941 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.476 5.476 13 C 0.002 3.998 14 C -0.112 4.112 15 H 0.082 0.918 16 C -0.103 4.103 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.125 4.125 20 C 0.059 3.941 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.006 0.994 25 H 0.259 0.741 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 1.060 -8.742 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.064 3.936 3 H 0.042 0.958 4 C -0.532 4.532 5 H 0.077 0.923 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.719 3.281 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.199 5.199 13 C -0.128 4.128 14 C -0.131 4.131 15 H 0.100 0.900 16 C -0.141 4.141 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.163 4.163 20 C -0.050 4.050 21 H 0.098 0.902 22 H 0.051 0.949 23 H 0.093 0.907 24 H 0.025 0.975 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.165 0.528 -8.550 10.003 hybrid contribution 0.509 0.371 1.034 1.211 sum 5.674 0.899 -7.516 9.460 Atomic orbital electron populations 1.21670 0.98167 0.99300 0.99212 1.19930 0.92297 0.93764 0.87658 0.95787 1.21053 1.34321 1.07951 0.89913 0.92316 1.24906 0.95414 0.94997 0.98851 1.69932 1.40875 1.19159 1.23374 0.86556 0.78562 0.79780 0.83241 1.19787 1.21181 1.21127 1.68928 1.06920 1.40737 1.03311 1.23745 0.96204 0.96802 0.96024 1.22114 0.95596 0.98692 0.96736 0.90014 1.20281 0.98835 0.96559 0.98410 1.20900 1.00045 0.97771 0.96522 1.21454 0.98489 0.99766 0.95878 1.21892 0.97715 0.97843 0.98880 1.22843 0.92181 0.97643 0.92366 0.90163 0.94882 0.90746 0.97519 0.93150 0.92363 0.91227 0.92893 0.92776 0.92458 0.92744 0.92659 0.92607 0.89990 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.15 37.16 0.34 -2.80 16 2 C 0.17 4.29 1.24 -68.86 -0.09 4.21 16 3 H 0.02 0.66 5.02 -51.93 -0.26 0.40 16 4 C -0.49 -13.49 6.92 -34.44 -0.24 -13.73 16 5 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 6 C 0.06 1.63 5.33 -17.82 -0.09 1.54 16 7 N -0.89 -25.49 11.73 55.43 0.65 -24.84 16 8 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 N -0.48 -10.54 5.97 -232.46 -1.39 -11.93 16 13 C 0.00 0.03 6.63 -2.98 -0.02 0.01 16 14 C -0.11 -1.86 3.86 -92.15 -0.36 -2.21 16 15 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.10 -1.42 5.37 -29.43 -0.16 -1.58 16 17 C -0.11 -1.61 5.76 -28.33 -0.16 -1.78 16 18 C -0.12 -1.83 5.89 -26.93 -0.16 -1.99 16 19 C -0.13 -2.45 4.05 -26.75 -0.11 -2.56 16 20 C 0.06 1.16 4.15 -66.99 -0.28 0.88 16 21 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.07 2.01 6.51 -51.93 -0.34 1.67 16 24 H 0.01 0.13 7.74 -51.93 -0.40 -0.27 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.06 1.12 7.18 -51.93 -0.37 0.74 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.85 7.99 -51.93 -0.41 0.43 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.81 4.72 -51.93 -0.25 1.57 16 35 H 0.07 1.63 7.61 -51.93 -0.40 1.23 16 LS Contribution 263.01 15.07 3.96 3.96 Total: -1.00 -28.02 263.01 -8.89 -36.91 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.77 Total: -0.55 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -1.32 Total: -20.02 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.74 Total: -36.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.02 -8.89 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307677200.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.645 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds