Wall clock time and date at job start Mon Mar 30 2020 02:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47051 * 2 1 4 4 C 1.50694 * 109.47257 * 240.00358 * 2 1 3 5 5 H 1.08002 * 119.99918 * 274.45777 * 4 2 1 6 6 C 1.37875 * 120.00255 * 94.17451 * 4 2 1 7 7 N 1.31514 * 119.99958 * 182.67803 * 6 4 2 8 8 Si 1.86796 * 119.99943 * 2.68151 * 6 4 2 9 9 H 1.48505 * 109.47211 * 85.07982 * 8 6 4 10 10 H 1.48500 * 109.47100 * 205.07448 * 8 6 4 11 11 H 1.48491 * 109.47170 * 325.07933 * 8 6 4 12 12 N 1.46900 * 109.47234 * 119.99686 * 2 1 3 13 13 C 1.46891 * 111.00493 * 275.00240 * 12 2 1 14 14 H 1.09009 * 115.57209 * 9.14799 * 13 12 2 15 15 C 1.52303 * 117.54133 * 154.99954 * 13 12 2 16 16 H 1.09001 * 115.90990 * 0.84653 * 15 13 12 17 17 C 1.52079 * 119.83837 * 216.46070 * 15 13 12 18 18 C 1.52867 * 110.51393 * 310.44362 * 17 15 13 19 19 C 1.53305 * 108.59430 * 305.11497 * 18 17 15 20 20 C 1.52880 * 108.58110 * 74.43843 * 19 18 17 21 21 C 1.51285 * 109.91361 * 305.76820 * 20 19 18 22 22 H 1.09004 * 113.81963 * 232.10044 * 21 20 19 23 23 H 1.09003 * 109.47439 * 61.52956 * 1 2 3 24 24 H 1.08995 * 109.47431 * 181.52716 * 1 2 3 25 25 H 1.09004 * 109.47576 * 301.52861 * 1 2 3 26 26 H 0.97005 * 120.00047 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99701 * 38.96046 * 12 2 1 28 28 H 1.08998 * 109.26829 * 70.71476 * 17 15 13 29 29 H 1.09002 * 109.26235 * 190.17836 * 17 15 13 30 30 H 1.09000 * 109.62092 * 64.84385 * 18 17 15 31 31 H 1.08994 * 109.61864 * 185.38416 * 18 17 15 32 32 H 1.08993 * 109.61968 * 194.17363 * 19 18 17 33 33 H 1.08999 * 109.61608 * 314.53369 * 19 18 17 34 34 H 1.09003 * 109.35435 * 65.69381 * 20 19 18 35 35 H 1.09004 * 109.35396 * 185.27148 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.1438 -1.7845 -1.2262 6 6 2.3441 0.0106 -2.3636 7 7 2.7321 -0.6138 -3.4541 8 14 2.2154 1.8740 -2.3500 9 1 3.4720 2.4531 -1.8105 10 1 1.9985 2.3654 -3.7345 11 1 1.0736 2.2851 -1.4942 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.6250 1.2002 2.1946 15 6 1.9934 -0.3873 3.7396 16 1 1.9029 -1.4728 3.7793 17 6 1.2525 0.3515 4.8433 18 6 1.7176 1.8057 4.9202 19 6 3.2413 1.8233 5.0887 20 6 3.8837 1.4647 3.7486 21 6 3.3269 0.1512 3.2453 22 1 4.0920 -0.5782 2.9792 23 1 -0.3634 0.4899 -0.9034 24 1 -0.3634 -1.0272 0.0274 25 1 -0.3634 0.5374 0.8760 26 1 2.9511 -0.1067 -4.2515 27 1 1.4496 -1.4979 1.4100 28 1 0.1825 0.3265 4.6373 29 1 1.4462 -0.1391 5.7972 30 1 1.4450 2.3262 4.0022 31 1 1.2494 2.2949 5.7742 32 1 3.5641 2.8183 5.3948 33 1 3.5343 1.0948 5.8446 34 1 3.6670 2.2486 3.0228 35 1 4.9631 1.3817 3.8761 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307717983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:52 Heat of formation + Delta-G solvation = 2.810858 kcal Electronic energy + Delta-G solvation = -14107.251851 eV Core-core repulsion = 11911.798203 eV Total energy + Delta-G solvation = -2195.453648 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44480 -35.61529 -32.91806 -31.54616 -30.66099 -27.99146 -25.18283 -23.79627 -22.42663 -20.32511 -19.99284 -18.25396 -16.85767 -15.91677 -14.72679 -14.29516 -14.00531 -13.76773 -13.60540 -13.08956 -12.47216 -12.36909 -12.16590 -12.04761 -11.81050 -11.35751 -11.07147 -10.94670 -10.83249 -10.63567 -10.17543 -10.08431 -9.77601 -9.60037 -9.30443 -8.99257 -8.51500 -7.23912 -6.03125 -4.00461 3.30509 3.38000 3.38371 4.12587 4.44221 4.63871 4.91977 4.95812 5.06742 5.27984 5.32715 5.48617 5.54615 5.66155 5.74207 5.81312 5.83619 6.05498 6.08332 6.14461 6.24279 6.25447 6.35059 6.41220 6.43643 6.51146 6.63394 6.71151 6.85951 7.15267 7.73695 8.02421 8.39139 8.69556 9.04260 9.59558 11.10581 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041508 B = 0.008368 C = 0.007983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.402651 B = 3345.220449 C = 3506.707993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.183 3.817 3 H 0.037 0.963 4 C -0.492 4.492 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.644 5.644 13 C 0.035 3.965 14 H 0.089 0.911 15 C -0.159 4.159 16 H 0.097 0.903 17 C -0.085 4.085 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.088 4.088 21 C -0.144 4.144 22 H 0.101 0.899 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.020 0.980 26 H 0.263 0.737 27 H 0.329 0.671 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 4.818 15.841 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.074 3.926 3 H 0.055 0.945 4 C -0.531 4.531 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.273 5.273 13 C -0.077 4.077 14 H 0.107 0.893 15 C -0.179 4.179 16 H 0.115 0.885 17 C -0.122 4.122 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.125 4.125 21 C -0.164 4.164 22 H 0.119 0.881 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.202 4.912 15.436 16.243 hybrid contribution -0.938 1.032 0.009 1.395 sum -2.141 5.944 15.445 16.687 Atomic orbital electron populations 1.22683 1.00952 1.00237 0.99122 1.19685 0.89319 0.94624 0.88938 0.94539 1.20859 1.42810 0.95820 0.93594 0.90618 1.24962 0.94697 0.98027 0.95481 1.69891 1.46224 1.35668 1.02213 0.86905 0.78999 0.86787 0.76982 1.20129 1.21538 1.19315 1.60646 1.56889 1.08013 1.01741 1.22721 1.00482 0.97316 0.87157 0.89350 1.22234 1.00113 0.99262 0.96254 0.88494 1.20809 0.99051 0.94977 0.97404 1.21611 0.96099 0.96786 1.01519 1.21549 0.95394 1.00738 0.97715 1.20769 0.99423 0.96041 0.96307 1.22111 0.91746 0.98832 1.03743 0.88060 0.93069 0.93449 0.96133 0.92700 0.85158 0.92120 0.91989 0.91892 0.92263 0.92463 0.91952 0.91968 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 9.13 37.16 0.34 -3.30 16 2 C 0.18 4.36 2.08 -68.87 -0.14 4.22 16 3 H 0.04 0.90 5.03 -51.93 -0.26 0.64 16 4 C -0.49 -14.04 9.19 -34.44 -0.32 -14.36 16 5 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 8 Si 0.88 21.88 26.75 -169.99 -4.55 17.33 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.27 -6.38 6.81 56.52 0.38 -5.99 16 12 N -0.64 -13.57 6.48 -100.98 -0.65 -14.22 16 13 C 0.03 0.61 5.14 -67.74 -0.35 0.27 16 14 H 0.09 1.61 6.91 -51.92 -0.36 1.25 16 15 C -0.16 -2.30 5.83 -91.92 -0.54 -2.84 16 16 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 17 C -0.08 -1.02 5.93 -27.27 -0.16 -1.18 16 18 C -0.12 -1.41 5.70 -26.64 -0.15 -1.56 16 19 C -0.12 -1.32 5.92 -26.63 -0.16 -1.48 16 20 C -0.09 -1.19 5.82 -27.66 -0.16 -1.35 16 21 C -0.14 -2.27 5.97 -91.62 -0.55 -2.82 16 22 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 23 H 0.05 1.13 7.88 -51.93 -0.41 0.72 16 24 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 25 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.33 6.49 8.41 -39.29 -0.33 6.16 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.79 7.12 -51.93 -0.37 0.42 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 275.41 15.07 4.15 4.15 Total: -1.00 -29.86 275.41 -8.50 -38.36 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.94 Total: 3.96 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -2.28 Total: -22.46 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.12 Total: -41.34 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.55 Total: 17.33 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.86 -8.50 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307717983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.168 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds