Wall clock time and date at job start Mon Mar 30 2020 02:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47051 * 2 1 4 4 C 1.50694 * 109.47257 * 240.00358 * 2 1 3 5 5 H 1.08002 * 119.99918 * 274.45777 * 4 2 1 6 6 C 1.37875 * 120.00255 * 94.17451 * 4 2 1 7 7 N 1.31514 * 119.99958 * 182.67803 * 6 4 2 8 8 Si 1.86796 * 119.99943 * 2.68151 * 6 4 2 9 9 H 1.48505 * 109.47211 * 85.07982 * 8 6 4 10 10 H 1.48500 * 109.47100 * 205.07448 * 8 6 4 11 11 H 1.48491 * 109.47170 * 325.07933 * 8 6 4 12 12 N 1.46900 * 109.47234 * 119.99686 * 2 1 3 13 13 C 1.46891 * 111.00493 * 275.00240 * 12 2 1 14 14 H 1.09009 * 115.57209 * 9.14799 * 13 12 2 15 15 C 1.52303 * 117.54133 * 154.99954 * 13 12 2 16 16 H 1.09001 * 115.90990 * 0.84653 * 15 13 12 17 17 C 1.52079 * 119.83837 * 216.46070 * 15 13 12 18 18 C 1.52867 * 110.51393 * 310.44362 * 17 15 13 19 19 C 1.53305 * 108.59430 * 305.11497 * 18 17 15 20 20 C 1.52880 * 108.58110 * 74.43843 * 19 18 17 21 21 C 1.51285 * 109.91361 * 305.76820 * 20 19 18 22 22 H 1.09004 * 113.81963 * 232.10044 * 21 20 19 23 23 H 1.09003 * 109.47439 * 61.52956 * 1 2 3 24 24 H 1.08995 * 109.47431 * 181.52716 * 1 2 3 25 25 H 1.09004 * 109.47576 * 301.52861 * 1 2 3 26 26 H 0.97005 * 120.00047 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99701 * 38.96046 * 12 2 1 28 28 H 1.08998 * 109.26829 * 70.71476 * 17 15 13 29 29 H 1.09002 * 109.26235 * 190.17836 * 17 15 13 30 30 H 1.09000 * 109.62092 * 64.84385 * 18 17 15 31 31 H 1.08994 * 109.61864 * 185.38416 * 18 17 15 32 32 H 1.08993 * 109.61968 * 194.17363 * 19 18 17 33 33 H 1.08999 * 109.61608 * 314.53369 * 19 18 17 34 34 H 1.09003 * 109.35435 * 65.69381 * 20 19 18 35 35 H 1.09004 * 109.35396 * 185.27148 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.1438 -1.7845 -1.2262 6 6 2.3441 0.0106 -2.3636 7 7 2.7321 -0.6138 -3.4541 8 14 2.2154 1.8740 -2.3500 9 1 3.4720 2.4531 -1.8105 10 1 1.9985 2.3654 -3.7345 11 1 1.0736 2.2851 -1.4942 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.6250 1.2002 2.1946 15 6 1.9934 -0.3873 3.7396 16 1 1.9029 -1.4728 3.7793 17 6 1.2525 0.3515 4.8433 18 6 1.7176 1.8057 4.9202 19 6 3.2413 1.8233 5.0887 20 6 3.8837 1.4647 3.7486 21 6 3.3269 0.1512 3.2453 22 1 4.0920 -0.5782 2.9792 23 1 -0.3634 0.4899 -0.9034 24 1 -0.3634 -1.0272 0.0274 25 1 -0.3634 0.5374 0.8760 26 1 2.9511 -0.1067 -4.2515 27 1 1.4496 -1.4979 1.4100 28 1 0.1825 0.3265 4.6373 29 1 1.4462 -0.1391 5.7972 30 1 1.4450 2.3262 4.0022 31 1 1.2494 2.2949 5.7742 32 1 3.5641 2.8183 5.3948 33 1 3.5343 1.0948 5.8446 34 1 3.6670 2.2486 3.0228 35 1 4.9631 1.3817 3.8761 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307717983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:52 Heat of formation + Delta-G solvation = -16.285093 kcal Electronic energy + Delta-G solvation = -14108.079913 eV Core-core repulsion = 11911.798203 eV Total energy + Delta-G solvation = -2196.281711 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63077 -37.28390 -34.60245 -33.27271 -31.66430 -29.64105 -27.24732 -24.92251 -23.43624 -21.95599 -21.62056 -19.44011 -18.81875 -17.20689 -16.61788 -15.62791 -15.33361 -15.07053 -14.80286 -14.56407 -14.42135 -13.96809 -13.70371 -13.15007 -13.02269 -12.91876 -12.74073 -12.53241 -12.12275 -11.97636 -11.79419 -11.65676 -11.22614 -11.08629 -10.81175 -10.73668 -10.41675 -8.82778 -8.27946 -6.30234 1.32230 1.33673 1.43504 2.33526 2.88830 3.00770 3.38299 3.89704 3.93814 4.05332 4.17113 4.33464 4.42103 4.46273 4.50989 4.64182 4.69348 4.76589 4.78724 4.85964 4.94451 5.09570 5.11800 5.12409 5.28569 5.35556 5.40493 5.44419 5.49149 5.58974 5.66617 6.08819 6.67813 6.74780 6.77244 7.33920 8.89628 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041508 B = 0.008368 C = 0.007983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.402651 B = 3345.220449 C = 3506.707993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.188 3.812 3 H 0.032 0.968 4 C -0.499 4.499 5 H 0.031 0.969 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.942 3.058 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.246 1.246 12 N -0.660 5.660 13 C 0.009 3.991 14 H 0.086 0.914 15 C -0.133 4.133 16 H 0.097 0.903 17 C -0.084 4.084 18 C -0.123 4.123 19 C -0.111 4.111 20 C -0.089 4.089 21 C -0.145 4.145 22 H 0.083 0.917 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.265 0.735 27 H 0.333 0.667 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 6.646 18.428 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 H 0.050 0.950 4 C -0.538 4.538 5 H 0.049 0.951 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.766 3.234 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.169 1.169 12 N -0.289 5.289 13 C -0.102 4.102 14 H 0.104 0.896 15 C -0.152 4.152 16 H 0.115 0.885 17 C -0.121 4.121 18 C -0.160 4.160 19 C -0.149 4.149 20 C -0.127 4.127 21 C -0.165 4.165 22 H 0.101 0.899 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.025 6.737 18.056 19.378 hybrid contribution -0.645 0.335 -0.752 1.046 sum -2.670 7.072 17.304 18.883 Atomic orbital electron populations 1.22511 0.98731 1.00868 1.00045 1.19472 0.90820 0.93651 0.88192 0.95026 1.21162 1.42523 0.94151 0.95951 0.95077 1.25847 0.94507 1.03457 0.94933 1.70049 1.48151 1.37849 1.03142 0.85827 0.79806 0.80195 0.77531 1.19712 1.21035 1.16921 1.60418 1.57213 1.08860 1.02443 1.22699 1.03008 0.96932 0.87574 0.89582 1.22297 0.98772 0.99509 0.94636 0.88451 1.20876 0.98979 0.95263 0.97025 1.21634 0.96229 0.96318 1.01858 1.21533 0.95175 1.01917 0.96246 1.20797 1.00086 0.94330 0.97481 1.22191 0.91466 0.99707 1.03154 0.89879 0.93932 0.93205 0.93127 0.92583 0.84748 0.91436 0.89960 0.93258 0.89971 0.90836 0.91035 0.93075 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.68 9.13 71.98 0.66 -6.02 16 2 C 0.19 8.90 2.08 44.17 0.09 9.00 16 3 H 0.03 1.53 5.03 -2.39 -0.01 1.52 16 4 C -0.50 -29.29 9.19 25.60 0.24 -29.05 16 5 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 6 C 0.01 0.55 5.47 84.65 0.46 1.02 16 7 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 8 Si 0.94 45.23 26.75 68.60 1.84 47.06 16 9 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.25 -10.79 6.81 99.48 0.68 -10.12 16 12 N -0.66 -27.76 6.48 -473.40 -3.07 -30.83 16 13 C 0.01 0.29 5.14 44.91 0.23 0.52 16 14 H 0.09 3.00 6.91 -2.38 -0.02 2.98 16 15 C -0.13 -3.54 5.83 -11.64 -0.07 -3.61 16 16 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 17 C -0.08 -1.70 5.93 30.25 0.18 -1.52 16 18 C -0.12 -2.36 5.70 30.65 0.17 -2.19 16 19 C -0.11 -2.14 5.92 30.66 0.18 -1.96 16 20 C -0.09 -2.25 5.82 29.99 0.17 -2.07 16 21 C -0.15 -4.39 5.97 -11.44 -0.07 -4.46 16 22 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 23 H 0.04 1.80 7.88 -2.39 -0.02 1.78 16 24 H 0.05 1.99 8.11 -2.39 -0.02 1.97 16 25 H 0.05 1.77 8.09 -2.38 -0.02 1.75 16 26 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 27 H 0.33 13.15 8.41 -89.69 -0.75 12.40 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.09 7.12 -2.39 -0.02 1.07 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 34 H 0.05 1.39 8.06 -2.39 -0.02 1.38 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -65.73 275.41 1.59 -64.14 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.27 Total: 20.39 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 2.25 Total: -40.34 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -2.77 Total: -91.25 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.84 Total: 47.06 kcal Total: -65.73 1.59 -64.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307717983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.857 kcal (2) G-P(sol) polarization free energy of solvation -65.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds