Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 H 1.08997 * 109.46695 * 359.71858 * 3 2 1 5 5 C 1.52995 * 109.46735 * 239.72139 * 3 2 1 6 6 N 1.46903 * 109.47149 * 119.72069 * 3 2 1 7 7 C 1.46845 * 110.99684 * 59.21105 * 6 3 2 8 8 C 1.53037 * 109.52218 * 174.16026 * 7 6 3 9 9 C 1.53121 * 109.27675 * 59.17470 * 8 7 6 10 10 C 1.50701 * 109.52116 * 182.43973 * 9 8 7 11 11 H 1.08001 * 120.00006 * 119.68517 * 10 9 8 12 12 C 1.37876 * 120.00264 * 299.68533 * 10 9 8 13 13 N 1.31514 * 120.00154 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99835 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47100 * 60.00403 * 14 12 10 16 16 H 1.48502 * 109.46875 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.46925 * 299.99930 * 14 12 10 18 18 C 1.53111 * 109.16297 * 302.34812 * 9 8 7 19 19 C 1.46852 * 110.99860 * 295.00054 * 6 3 2 20 20 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 21 21 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 22 22 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 23 23 H 1.09003 * 109.46931 * 180.02562 * 5 3 2 24 24 H 1.08997 * 109.47299 * 299.99349 * 5 3 2 25 25 H 1.09001 * 109.47730 * 60.00045 * 5 3 2 26 26 H 1.09006 * 109.46202 * 294.17041 * 7 6 3 27 27 H 1.08998 * 109.46404 * 54.14181 * 7 6 3 28 28 H 1.08998 * 109.50350 * 299.23666 * 8 7 6 29 29 H 1.09002 * 109.50690 * 179.11777 * 8 7 6 30 30 H 1.09003 * 109.52094 * 62.25699 * 9 8 7 31 31 H 0.97000 * 120.00147 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.50417 * 297.70854 * 18 9 8 33 33 H 1.09003 * 109.50440 * 177.59880 * 18 9 8 34 34 H 1.08997 * 109.45983 * 305.85009 * 19 6 3 35 35 H 1.08997 * 109.46289 * 65.82131 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 -0.0050 5 6 2.9484 1.3831 -1.2457 6 7 2.9030 1.3859 1.2028 7 6 3.8591 0.2725 1.2529 8 6 4.8097 0.4675 2.4363 9 6 3.9974 0.5261 3.7329 10 6 4.9224 0.7780 4.8957 11 1 4.7958 1.6606 5.5051 12 6 5.9303 -0.1183 5.1816 13 7 6.0849 -1.1929 4.4392 14 14 7.0773 0.1944 6.6226 15 1 6.2878 0.2590 7.8786 16 1 8.0671 -0.9087 6.7157 17 1 7.7890 1.4815 6.4184 18 6 2.9766 1.6631 3.6355 19 6 2.0790 1.4334 2.4174 20 1 -0.5400 -0.9353 0.0045 21 1 -0.5400 0.9353 -0.0045 22 1 1.8500 -0.9353 0.0046 23 1 3.4937 2.3268 -1.2455 24 1 3.6567 0.5547 -1.2407 25 1 2.3255 1.3231 -2.1382 26 1 3.3178 -0.6660 1.3729 27 1 4.4331 0.2446 0.3267 28 1 5.3615 1.3990 2.3101 29 1 5.5094 -0.3671 2.4825 30 1 3.4762 -0.4199 3.8793 31 1 6.7937 -1.8236 4.6406 32 1 3.4995 2.6135 3.5283 33 1 2.3664 1.6828 4.5385 34 1 1.3603 2.2488 2.3370 35 1 1.5460 0.4895 2.5318 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307751721.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = 9.983709 kcal Electronic energy + Delta-G solvation = -14326.318744 eV Core-core repulsion = 12131.176134 eV Total energy + Delta-G solvation = -2195.142610 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.80460 -35.24438 -32.65755 -31.03987 -29.74664 -28.98476 -25.48494 -22.87796 -21.98643 -21.39330 -19.44601 -18.11491 -16.36978 -15.77956 -14.52227 -14.47329 -14.08368 -13.84228 -13.29854 -12.66811 -12.56003 -12.39013 -11.85899 -11.80351 -11.25068 -11.11834 -10.86233 -10.73107 -10.63404 -10.41481 -10.13027 -9.89954 -9.46630 -9.21845 -8.89590 -8.64313 -8.24567 -7.65826 -5.93117 -3.98331 2.39449 3.35448 3.39693 3.42734 4.48033 4.53764 4.96266 5.25929 5.36921 5.47065 5.61356 5.71358 5.88583 5.97191 5.99384 6.12682 6.25025 6.30491 6.36291 6.41364 6.66130 6.69459 6.75446 6.84230 6.92713 7.14841 7.23329 7.50730 7.68439 7.77955 7.89019 8.10604 8.21283 8.53304 9.05206 9.65714 11.13021 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.056206 B = 0.007732 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.048461 B = 3620.216207 C = 3733.849131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.102 3.898 4 H 0.077 0.923 5 C -0.140 4.140 6 N -0.524 5.524 7 C 0.052 3.948 8 C -0.104 4.104 9 C 0.048 3.952 10 C -0.510 4.510 11 H 0.053 0.947 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.107 4.107 19 C 0.061 3.939 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.107 0.893 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.024 0.976 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.019 0.981 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 2.782 -8.630 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.193 4.193 3 C -0.006 4.006 4 H 0.095 0.905 5 C -0.197 4.197 6 N -0.248 5.248 7 C -0.075 4.075 8 C -0.143 4.143 9 C 0.030 3.970 10 C -0.549 4.549 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.144 4.144 19 C -0.067 4.067 20 H 0.110 0.890 21 H 0.112 0.888 22 H 0.125 0.875 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.895 3.070 -8.654 11.483 hybrid contribution 0.124 -0.768 0.840 1.145 sum -6.771 2.302 -7.814 10.593 Atomic orbital electron populations 1.23759 0.95905 1.01343 1.02185 1.23794 0.96565 1.00347 0.98581 1.20953 0.94124 0.93581 0.91958 0.90472 1.21812 0.99524 1.02705 0.95705 1.62345 1.16482 1.45001 1.00924 1.22335 0.94353 0.90521 1.00253 1.21667 0.97827 1.02135 0.92645 1.18669 0.92328 0.92766 0.93242 1.21192 1.13830 1.07221 1.12624 0.92840 1.24966 0.97496 0.95121 0.96426 1.69870 1.32786 1.11671 1.38874 0.86700 0.80688 0.77706 0.83136 1.20399 1.21386 1.20318 1.21680 0.97571 1.01220 0.93966 1.22086 0.95030 0.98787 0.90793 0.88979 0.88847 0.87474 0.91765 0.92252 0.92859 0.95817 0.92291 0.93910 0.89051 0.96255 0.93096 0.92569 0.93315 0.92754 0.95578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 14.32 29.01 0.42 -2.02 16 2 C -0.17 -2.47 6.96 -36.03 -0.25 -2.72 16 3 C 0.10 1.52 2.73 -68.86 -0.19 1.34 16 4 H 0.08 1.09 7.72 -51.93 -0.40 0.69 16 5 C -0.14 -1.84 8.98 37.16 0.33 -1.51 16 6 N -0.52 -9.55 4.64 -228.08 -1.06 -10.61 16 7 C 0.05 1.05 4.76 -3.83 -0.02 1.03 16 8 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 9 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 10 C -0.51 -14.28 8.56 -34.44 -0.29 -14.57 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 13 N -0.89 -25.74 11.37 55.43 0.63 -25.11 16 14 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.11 -2.31 5.32 -26.66 -0.14 -2.45 16 19 C 0.06 1.14 5.13 -3.83 -0.02 1.12 16 20 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 21 H 0.09 1.07 7.83 -52.49 -0.41 0.66 16 22 H 0.11 1.61 7.09 -52.49 -0.37 1.24 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.81 6.30 -51.93 -0.33 0.48 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.49 6.77 -51.93 -0.35 0.14 16 27 H 0.06 1.08 6.03 -51.93 -0.31 0.77 16 28 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.03 0.50 7.44 -51.93 -0.39 0.12 16 LS Contribution 272.63 15.07 4.11 4.11 Total: -1.00 -28.23 272.63 -7.74 -35.97 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.80 Total: -1.09 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -0.59 Total: -19.80 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.43 Total: -35.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.23 -7.74 -35.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751721.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.949 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds