Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 H 1.08997 * 109.46695 * 359.71858 * 3 2 1 5 5 C 1.52995 * 109.46735 * 239.72139 * 3 2 1 6 6 N 1.46903 * 109.47149 * 119.72069 * 3 2 1 7 7 C 1.46845 * 110.99684 * 59.21105 * 6 3 2 8 8 C 1.53037 * 109.52218 * 174.16026 * 7 6 3 9 9 C 1.53121 * 109.27675 * 59.17470 * 8 7 6 10 10 C 1.50701 * 109.52116 * 182.43973 * 9 8 7 11 11 H 1.08001 * 120.00006 * 119.68517 * 10 9 8 12 12 C 1.37876 * 120.00264 * 299.68533 * 10 9 8 13 13 N 1.31514 * 120.00154 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99835 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47100 * 60.00403 * 14 12 10 16 16 H 1.48502 * 109.46875 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.46925 * 299.99930 * 14 12 10 18 18 C 1.53111 * 109.16297 * 302.34812 * 9 8 7 19 19 C 1.46852 * 110.99860 * 295.00054 * 6 3 2 20 20 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 21 21 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 22 22 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 23 23 H 1.09003 * 109.46931 * 180.02562 * 5 3 2 24 24 H 1.08997 * 109.47299 * 299.99349 * 5 3 2 25 25 H 1.09001 * 109.47730 * 60.00045 * 5 3 2 26 26 H 1.09006 * 109.46202 * 294.17041 * 7 6 3 27 27 H 1.08998 * 109.46404 * 54.14181 * 7 6 3 28 28 H 1.08998 * 109.50350 * 299.23666 * 8 7 6 29 29 H 1.09002 * 109.50690 * 179.11777 * 8 7 6 30 30 H 1.09003 * 109.52094 * 62.25699 * 9 8 7 31 31 H 0.97000 * 120.00147 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.50417 * 297.70854 * 18 9 8 33 33 H 1.09003 * 109.50440 * 177.59880 * 18 9 8 34 34 H 1.08997 * 109.45983 * 305.85009 * 19 6 3 35 35 H 1.08997 * 109.46289 * 65.82131 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 -0.0050 5 6 2.9484 1.3831 -1.2457 6 7 2.9030 1.3859 1.2028 7 6 3.8591 0.2725 1.2529 8 6 4.8097 0.4675 2.4363 9 6 3.9974 0.5261 3.7329 10 6 4.9224 0.7780 4.8957 11 1 4.7958 1.6606 5.5051 12 6 5.9303 -0.1183 5.1816 13 7 6.0849 -1.1929 4.4392 14 14 7.0773 0.1944 6.6226 15 1 6.2878 0.2590 7.8786 16 1 8.0671 -0.9087 6.7157 17 1 7.7890 1.4815 6.4184 18 6 2.9766 1.6631 3.6355 19 6 2.0790 1.4334 2.4174 20 1 -0.5400 -0.9353 0.0045 21 1 -0.5400 0.9353 -0.0045 22 1 1.8500 -0.9353 0.0046 23 1 3.4937 2.3268 -1.2455 24 1 3.6567 0.5547 -1.2407 25 1 2.3255 1.3231 -2.1382 26 1 3.3178 -0.6660 1.3729 27 1 4.4331 0.2446 0.3267 28 1 5.3615 1.3990 2.3101 29 1 5.5094 -0.3671 2.4825 30 1 3.4762 -0.4199 3.8793 31 1 6.7937 -1.8236 4.6406 32 1 3.4995 2.6135 3.5283 33 1 2.3664 1.6828 4.5385 34 1 1.3603 2.2488 2.3370 35 1 1.5460 0.4895 2.5318 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307751721.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = -6.694970 kcal Electronic energy + Delta-G solvation = -14327.041986 eV Core-core repulsion = 12131.176134 eV Total energy + Delta-G solvation = -2195.865852 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28430 -36.85007 -34.45371 -32.51180 -31.48183 -30.35116 -27.37866 -24.44001 -23.66472 -22.75965 -20.93614 -19.66468 -18.43417 -17.24071 -16.46847 -15.83600 -15.33580 -15.22874 -14.88795 -14.47811 -14.30937 -13.95601 -13.33900 -12.98891 -12.81324 -12.78189 -12.59213 -12.35146 -12.16394 -11.95372 -11.88354 -11.68387 -11.32507 -10.80017 -10.62711 -10.42700 -10.26496 -9.11382 -8.07323 -6.21070 1.35945 1.41349 1.43006 1.50522 2.44161 3.13705 3.19536 3.88471 4.12873 4.23979 4.28630 4.43314 4.47256 4.59072 4.63516 4.79175 4.86474 4.93798 4.95170 4.98970 5.07507 5.24600 5.25678 5.31727 5.39113 5.57891 5.63639 5.69757 5.78508 6.01767 6.06275 6.33536 6.40940 6.42214 6.90506 7.46588 8.97057 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.056206 B = 0.007732 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.048461 B = 3620.216207 C = 3733.849131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.197 4.197 3 C 0.103 3.897 4 H 0.094 0.906 5 C -0.137 4.137 6 N -0.531 5.531 7 C 0.067 3.933 8 C -0.096 4.096 9 C 0.045 3.955 10 C -0.536 4.536 11 H 0.051 0.949 12 C 0.012 3.988 13 N -0.918 5.918 14 Si 0.954 3.046 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.271 1.271 18 C -0.100 4.100 19 C 0.069 3.931 20 H 0.103 0.897 21 H 0.110 0.890 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.060 0.940 30 H -0.015 1.015 31 H 0.260 0.740 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 3.782 -9.272 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.217 4.217 3 C -0.005 4.005 4 H 0.112 0.888 5 C -0.194 4.194 6 N -0.254 5.254 7 C -0.060 4.060 8 C -0.134 4.134 9 C 0.027 3.973 10 C -0.574 4.574 11 H 0.069 0.931 12 C -0.187 4.187 13 N -0.558 5.558 14 Si 0.779 3.221 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.138 4.138 19 C -0.059 4.059 20 H 0.121 0.879 21 H 0.128 0.872 22 H 0.111 0.889 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.032 0.968 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.003 0.997 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.969 4.078 -9.307 12.913 hybrid contribution 0.394 -1.092 1.022 1.547 sum -7.575 2.987 -8.284 11.616 Atomic orbital electron populations 1.23993 0.95280 1.02720 0.99119 1.23651 0.97225 0.99438 1.01408 1.21060 0.94232 0.94509 0.90676 0.88815 1.21797 0.99475 1.02203 0.95922 1.62290 1.17175 1.43828 1.02142 1.22051 0.94173 0.90902 0.98900 1.21435 0.97942 0.99982 0.94080 1.18639 0.92873 0.92543 0.93278 1.21582 1.14770 1.07335 1.13692 0.93109 1.25757 0.99002 0.94888 0.99016 1.70015 1.33257 1.12318 1.40186 0.85682 0.78673 0.77762 0.79958 1.19702 1.20884 1.19662 1.21552 0.97127 0.99173 0.95958 1.21981 0.94645 0.99541 0.89748 0.87874 0.87152 0.88946 0.91830 0.93242 0.90516 0.96794 0.90688 0.95167 0.92197 0.99703 0.93094 0.93022 0.93026 0.89795 0.96223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 14.32 67.78 0.97 -2.83 16 2 C -0.20 -5.23 6.96 25.64 0.18 -5.05 16 3 C 0.10 2.80 2.73 44.17 0.12 2.92 16 4 H 0.09 2.27 7.72 -2.39 -0.02 2.26 16 5 C -0.14 -3.26 8.98 71.98 0.65 -2.62 16 6 N -0.53 -18.59 4.64 -875.51 -4.06 -22.66 16 7 C 0.07 2.69 4.76 86.33 0.41 3.11 16 8 C -0.10 -4.75 5.12 30.65 0.16 -4.59 16 9 C 0.05 2.36 2.16 -11.46 -0.02 2.34 16 10 C -0.54 -30.61 8.56 25.60 0.22 -30.39 16 11 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 12 C 0.01 0.67 5.31 84.65 0.45 1.11 16 13 N -0.92 -54.30 11.37 21.45 0.24 -54.05 16 14 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 C -0.10 -4.33 5.32 30.64 0.16 -4.17 16 19 C 0.07 2.47 5.13 86.32 0.44 2.91 16 20 H 0.10 2.03 8.06 -2.91 -0.02 2.01 16 21 H 0.11 2.06 7.83 -2.91 -0.02 2.04 16 22 H 0.09 2.71 7.09 -2.91 -0.02 2.69 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 1.27 6.30 -2.39 -0.02 1.25 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.01 0.58 6.77 -2.38 -0.02 0.57 16 27 H 0.07 2.74 6.03 -2.39 -0.01 2.72 16 28 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 3.32 6.17 -2.39 -0.01 3.31 16 30 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 31 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.55 8.08 -2.39 -0.02 2.53 16 35 H 0.02 0.73 7.44 -2.39 -0.02 0.72 16 Total: -1.00 -61.15 272.63 2.97 -58.18 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.03 Total: 9.19 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 3.73 Total: -37.26 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -3.82 Total: -76.71 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -61.15 2.97 -58.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751721.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.487 kcal (2) G-P(sol) polarization free energy of solvation -61.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds