Wall clock time and date at job start Mon Mar 30 2020 02:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50697 * 120.00377 * 2 1 4 4 N 1.46903 * 109.47110 * 122.42559 * 3 2 1 5 5 C 1.46901 * 111.00228 * 197.07323 * 4 3 2 6 6 C 1.50698 * 109.47154 * 158.94295 * 5 4 3 7 7 H 1.08000 * 120.00063 * 1.51464 * 6 5 4 8 8 C 1.37879 * 119.99848 * 181.51794 * 6 5 4 9 9 N 1.31514 * 119.99739 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99882 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47103 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47207 * 119.99589 * 10 8 6 13 13 H 1.48501 * 109.46656 * 239.99502 * 10 8 6 14 14 C 1.46906 * 110.99799 * 73.12323 * 4 3 2 15 15 H 1.09001 * 109.46744 * 314.92350 * 14 4 3 16 16 C 1.53000 * 109.47176 * 74.92410 * 14 4 3 17 17 C 1.53001 * 109.46876 * 194.92486 * 14 4 3 18 18 C 1.52994 * 117.50076 * 243.52527 * 17 14 4 19 19 C 1.52998 * 117.49760 * 174.90181 * 17 14 4 20 20 H 1.08006 * 119.99831 * 0.02562 * 1 2 3 21 21 H 1.07996 * 120.00662 * 179.97438 * 1 2 3 22 22 H 1.08003 * 120.00118 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47431 * 2.42817 * 3 2 1 24 24 H 1.08996 * 109.47345 * 242.42830 * 3 2 1 25 25 H 1.08999 * 109.47105 * 278.94779 * 5 4 3 26 26 H 1.09004 * 109.47054 * 38.94077 * 5 4 3 27 27 H 0.97003 * 119.99756 * 180.02562 * 9 8 6 28 28 H 1.08996 * 109.46791 * 187.24857 * 16 14 4 29 29 H 1.08994 * 109.47173 * 307.25514 * 16 14 4 30 30 H 1.09001 * 109.47017 * 67.25504 * 16 14 4 31 31 H 1.09001 * 115.56057 * 29.21668 * 17 14 4 32 32 H 1.09009 * 117.49903 * 0.02562 * 18 17 14 33 33 H 1.08999 * 117.50047 * 145.02353 * 18 17 14 34 34 H 1.09001 * 117.49925 * 214.98335 * 19 17 14 35 35 H 1.09006 * 117.49677 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9515 1.3577 1.1691 5 6 3.3906 2.7341 1.4351 6 6 3.8429 2.8490 2.8680 7 1 3.8308 1.9801 3.5094 8 6 4.2722 4.0633 3.3601 9 7 4.2873 5.1211 2.5789 10 14 4.8336 4.2055 5.1361 11 1 4.7214 2.8811 5.7983 12 1 6.2469 4.6601 5.1736 13 1 3.9783 5.1887 5.8483 14 6 4.1030 0.4619 0.9963 15 1 3.7612 -0.4989 0.6114 16 6 5.0903 1.0854 0.0077 17 6 4.7944 0.2542 2.3453 18 6 6.2332 0.7550 2.4862 19 6 5.9507 -0.7462 2.3998 20 1 -0.5400 0.9354 -0.0004 21 1 -0.5401 -0.9352 -0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 1.3561 2.1331 0.0435 24 1 2.6571 1.3818 -0.9109 25 1 4.2178 2.9862 0.7716 26 1 2.5620 3.4202 1.2595 27 1 4.5897 5.9754 2.9250 28 1 5.8789 0.3680 -0.2193 29 1 4.5662 1.3519 -0.9100 30 1 5.5294 1.9805 0.4484 31 1 4.1487 0.3254 3.2206 32 1 6.6871 1.2328 1.6179 33 1 6.5342 1.1556 3.4542 34 1 6.0657 -1.3333 3.3110 35 1 6.2185 -1.2568 1.4747 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308131399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:05 Heat of formation + Delta-G solvation = 57.654406 kcal Electronic energy + Delta-G solvation = -14438.695129 eV Core-core repulsion = 12245.619675 eV Total energy + Delta-G solvation = -2193.075453 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.61895 -35.63684 -33.21667 -32.15679 -28.95254 -27.19392 -24.96773 -23.66672 -21.65886 -20.88756 -19.50099 -17.93815 -16.28441 -15.61660 -15.15812 -14.55355 -14.40895 -13.68046 -13.54089 -12.78999 -12.34705 -12.20612 -11.55471 -11.40506 -11.12771 -11.00288 -10.80480 -10.64647 -10.51871 -10.41909 -10.17409 -9.80332 -9.52095 -9.17093 -8.93308 -8.79982 -8.31107 -7.14634 -5.93378 -3.90549 2.67251 3.33878 3.42108 3.45918 4.48017 4.57626 5.03202 5.30310 5.41202 5.48875 5.58797 5.66730 5.81755 5.89293 5.95405 6.06746 6.11138 6.16794 6.19837 6.30861 6.42893 6.56312 6.69153 6.81801 6.87820 6.97711 7.09130 7.18944 7.32748 7.48985 7.94850 8.20315 8.28259 8.63677 9.15483 9.71105 11.17764 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.011869 C = 0.009479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.374549 B = 2358.530209 C = 2953.198012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C 0.074 3.926 4 N -0.526 5.526 5 C 0.184 3.816 6 C -0.485 4.485 7 H 0.070 0.930 8 C 0.052 3.948 9 N -0.904 5.904 10 Si 0.888 3.112 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.287 1.287 14 C 0.123 3.877 15 H 0.063 0.937 16 C -0.186 4.186 17 C -0.103 4.103 18 C -0.163 4.163 19 C -0.207 4.207 20 H 0.093 0.907 21 H 0.090 0.910 22 H 0.101 0.899 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.006 0.994 26 H 0.023 0.977 27 H 0.257 0.743 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 -9.210 -4.085 10.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.146 4.146 3 C -0.054 4.054 4 N -0.249 5.249 5 C 0.059 3.941 6 C -0.524 4.524 7 H 0.088 0.912 8 C -0.148 4.148 9 N -0.545 5.545 10 Si 0.717 3.283 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.213 1.213 14 C 0.014 3.986 15 H 0.081 0.919 16 C -0.244 4.244 17 C -0.121 4.121 18 C -0.200 4.200 19 C -0.245 4.245 20 H 0.112 0.888 21 H 0.108 0.892 22 H 0.119 0.881 23 H 0.090 0.910 24 H 0.051 0.949 25 H 0.024 0.976 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.658 -9.163 -3.667 9.892 hybrid contribution 0.820 0.565 0.305 1.041 sum 0.162 -8.598 -3.362 9.234 Atomic orbital electron populations 1.23672 0.95901 1.01163 1.03445 1.22957 0.95794 0.98522 0.97304 1.21261 0.96071 0.95011 0.93023 1.62352 1.16207 1.12091 1.34272 1.19926 0.95078 0.81979 0.97091 1.21345 1.40461 0.94810 0.95809 0.91176 1.24939 0.96568 0.95931 0.97323 1.69967 1.48930 1.00126 1.35460 0.86592 0.78126 0.78020 0.85609 1.19735 1.21324 1.21316 1.20959 0.89779 0.95261 0.92646 0.91924 1.22578 1.00037 1.02462 0.99373 1.22171 0.90276 1.00454 0.99212 1.22887 1.00226 0.94194 1.02685 1.23063 1.06664 0.93181 1.01592 0.88829 0.89174 0.88104 0.90965 0.94854 0.97616 0.95887 0.93304 0.93595 0.93695 0.90030 0.86906 0.88918 0.89765 0.89961 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.87 14.32 29.02 0.42 -2.45 16 2 C -0.13 -1.99 9.28 -36.03 -0.33 -2.32 16 3 C 0.07 1.35 5.33 -4.98 -0.03 1.32 16 4 N -0.53 -11.09 4.36 -229.52 -1.00 -12.09 16 5 C 0.18 4.63 4.50 -4.98 -0.02 4.61 16 6 C -0.49 -13.07 7.58 -34.44 -0.26 -13.33 16 7 H 0.07 1.88 5.18 -52.49 -0.27 1.61 16 8 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.12 2.30 2.55 -67.71 -0.17 2.13 16 15 H 0.06 1.08 6.69 -51.93 -0.35 0.73 16 16 C -0.19 -3.36 6.81 37.16 0.25 -3.11 16 17 C -0.10 -1.97 3.91 -90.62 -0.35 -2.32 16 18 C -0.16 -3.04 9.01 -26.74 -0.24 -3.28 16 19 C -0.21 -3.32 10.04 -26.73 -0.27 -3.58 16 20 H 0.09 1.30 7.84 -52.48 -0.41 0.89 16 21 H 0.09 1.09 8.06 -52.49 -0.42 0.66 16 22 H 0.10 1.48 7.16 -52.48 -0.38 1.10 16 23 H 0.07 1.35 7.29 -51.93 -0.38 0.98 16 24 H 0.03 0.59 6.44 -51.93 -0.33 0.25 16 25 H 0.01 0.16 5.37 -51.93 -0.28 -0.12 16 26 H 0.02 0.64 7.61 -51.93 -0.39 0.24 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.05 0.72 7.80 -51.93 -0.41 0.32 16 29 H 0.04 0.78 6.55 -51.93 -0.34 0.44 16 30 H 0.08 1.70 5.00 -51.93 -0.26 1.44 16 31 H 0.11 2.41 6.43 -51.93 -0.33 2.07 16 32 H 0.09 1.73 5.79 -51.92 -0.30 1.43 16 33 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 LS Contribution 273.13 15.07 4.12 4.12 Total: -1.00 -28.25 273.13 -7.53 -35.78 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.25 Total: 2.41 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -1.11 Total: -20.97 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.26 Total: -37.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.25 -7.53 -35.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308131399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.434 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds