Wall clock time and date at job start Mon Mar 30 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00207 * 2 1 4 4 N 1.46897 * 109.47245 * 125.51597 * 3 2 1 5 5 C 1.46904 * 111.00124 * 287.41323 * 4 3 2 6 6 C 1.50700 * 109.47074 * 73.31410 * 5 4 3 7 7 H 1.08003 * 119.99748 * 5.25553 * 6 5 4 8 8 C 1.37877 * 119.99733 * 185.25327 * 6 5 4 9 9 N 1.31506 * 120.00245 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99752 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47153 * 90.00317 * 10 8 6 12 12 H 1.48502 * 109.47038 * 209.99857 * 10 8 6 13 13 H 1.48497 * 109.47236 * 330.00393 * 10 8 6 14 14 C 1.46900 * 110.99829 * 163.45637 * 4 3 2 15 15 H 1.09006 * 109.46795 * 173.75917 * 14 4 3 16 16 C 1.52994 * 109.47196 * 53.75999 * 14 4 3 17 17 C 1.53002 * 109.47304 * 293.75700 * 14 4 3 18 18 C 1.53002 * 117.49516 * 253.46813 * 17 14 4 19 19 C 1.53000 * 117.49654 * 184.84802 * 17 14 4 20 20 H 1.08005 * 120.00004 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.00376 * 179.97438 * 1 2 3 22 22 H 1.08001 * 119.99396 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.46765 * 5.51566 * 3 2 1 24 24 H 1.09003 * 109.46872 * 245.51924 * 3 2 1 25 25 H 1.08999 * 109.46651 * 193.31454 * 5 4 3 26 26 H 1.08997 * 109.46911 * 313.31471 * 5 4 3 27 27 H 0.97002 * 120.00732 * 179.97438 * 9 8 6 28 28 H 1.09006 * 109.47181 * 299.99681 * 16 14 4 29 29 H 1.09002 * 109.47299 * 180.02562 * 16 14 4 30 30 H 1.08999 * 109.47457 * 59.99525 * 16 14 4 31 31 H 1.08995 * 115.54890 * 39.17066 * 17 14 4 32 32 H 1.08994 * 117.50476 * 0.02562 * 18 17 14 33 33 H 1.09007 * 117.49395 * 145.02384 * 18 17 14 34 34 H 1.08997 * 117.49414 * 214.97759 * 19 17 14 35 35 H 1.09000 * 117.50118 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0052 1.3268 1.1273 5 6 2.2956 1.4924 2.4029 6 6 1.5898 0.2084 2.7554 7 1 1.7296 -0.6703 2.1432 8 6 0.7658 0.1554 3.8596 9 7 0.5954 1.2255 4.6048 10 14 -0.1084 -1.4364 4.2971 11 1 0.7487 -2.2378 5.2073 12 1 -1.3935 -1.1257 4.9732 13 1 -0.3752 -2.2111 3.0586 14 6 4.0171 2.3764 0.9477 15 1 4.6329 2.4446 1.8446 16 6 3.3230 3.7175 0.7023 17 6 4.9011 2.0325 -0.2529 18 6 6.3241 1.5486 0.0333 19 6 6.0926 2.9488 -0.5383 20 1 -0.5400 0.9354 0.0004 21 1 -0.5401 -0.9353 -0.0004 22 1 1.8499 -0.9354 0.0004 23 1 1.3593 2.1311 0.0988 24 1 2.6140 1.4067 -0.9353 25 1 3.0109 1.7410 3.1869 26 1 1.5643 2.2953 2.3102 27 1 0.0154 1.1884 5.3815 28 1 2.7072 3.6493 -0.1945 29 1 4.0739 4.4963 0.5686 30 1 2.6932 3.9625 1.5576 31 1 4.3839 1.5981 -1.1083 32 1 6.6304 1.4748 1.0767 33 1 6.7433 0.7955 -0.6341 34 1 6.3596 3.1170 -1.5816 35 1 6.2466 3.7969 0.1289 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308131400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:08 Heat of formation + Delta-G solvation = 47.814108 kcal Electronic energy + Delta-G solvation = -14241.901095 eV Core-core repulsion = 12048.398934 eV Total energy + Delta-G solvation = -2193.502161 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.54282 -35.91673 -32.63975 -32.49076 -29.21400 -26.97532 -24.81923 -23.56308 -22.01519 -20.86121 -19.50663 -18.49594 -16.35089 -15.65430 -14.87587 -14.28685 -13.91722 -13.90830 -13.74018 -12.65176 -12.47890 -12.13087 -11.86157 -11.74794 -11.29861 -11.05087 -10.94557 -10.61051 -10.43706 -10.26810 -10.20228 -10.15761 -9.73655 -9.60757 -9.14540 -8.43962 -8.10487 -7.18222 -5.93663 -3.91211 3.24692 3.37131 3.42582 3.46169 4.08849 4.49851 4.86344 5.10257 5.23766 5.39751 5.43367 5.69445 5.75844 5.81955 5.82745 5.94092 6.01678 6.06495 6.13199 6.29399 6.34586 6.37880 6.47736 6.54219 6.74720 6.79015 7.29579 7.41072 7.51174 7.70403 7.92940 8.18248 8.27735 8.63939 9.14600 9.70661 11.17337 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.009080 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.596686 B = 3082.907375 C = 3316.453845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C 0.092 3.908 4 N -0.526 5.526 5 C 0.193 3.807 6 C -0.490 4.490 7 H 0.069 0.931 8 C 0.054 3.946 9 N -0.903 5.903 10 Si 0.891 3.109 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.273 1.273 14 C 0.110 3.890 15 H 0.075 0.925 16 C -0.180 4.180 17 C -0.132 4.132 18 C -0.174 4.174 19 C -0.187 4.187 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.101 0.899 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.022 0.978 26 H -0.002 1.002 27 H 0.258 0.742 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 2.264 -9.514 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.118 4.118 3 C -0.036 4.036 4 N -0.250 5.250 5 C 0.069 3.931 6 C -0.529 4.529 7 H 0.087 0.913 8 C -0.147 4.147 9 N -0.544 5.544 10 Si 0.720 3.280 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.198 1.198 14 C 0.001 3.999 15 H 0.093 0.907 16 C -0.239 4.239 17 C -0.151 4.151 18 C -0.211 4.211 19 C -0.225 4.225 20 H 0.103 0.897 21 H 0.103 0.897 22 H 0.119 0.881 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.015 0.985 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.196 1.870 -9.324 11.350 hybrid contribution -1.000 -0.050 0.510 1.124 sum 5.196 1.821 -8.814 10.392 Atomic orbital electron populations 1.23375 0.95954 1.00359 1.04630 1.22481 0.95203 0.97843 0.96253 1.21072 0.93826 0.94801 0.93900 1.62258 1.14930 1.43979 1.03816 1.19766 0.92225 0.96886 0.84263 1.21237 1.25139 0.96840 1.09658 0.91336 1.24927 0.96995 0.96187 0.96548 1.69953 1.39065 1.28180 1.17193 0.86597 0.78974 0.83956 0.78521 1.20882 1.21505 1.19801 1.21233 0.93611 0.89430 0.95645 0.90691 1.22430 1.00927 0.98523 1.01978 1.22330 0.89641 1.02793 1.00309 1.22899 0.99905 0.96569 1.01746 1.22911 1.04126 0.94236 1.01219 0.89719 0.89742 0.88117 0.95202 0.92100 0.95989 0.98455 0.93191 0.92814 0.93150 0.92195 0.87948 0.88897 0.89411 0.89429 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.00 13.99 29.01 0.41 -3.60 16 2 C -0.10 -1.98 6.66 -36.03 -0.24 -2.22 16 3 C 0.09 1.78 4.12 -4.98 -0.02 1.76 16 4 N -0.53 -11.19 4.43 -229.52 -1.02 -12.21 16 5 C 0.19 5.00 4.14 -4.97 -0.02 4.98 16 6 C -0.49 -13.60 7.57 -34.44 -0.26 -13.86 16 7 H 0.07 1.89 5.99 -52.48 -0.31 1.58 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -27.06 13.28 55.43 0.74 -26.32 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 14 C 0.11 1.96 2.49 -67.71 -0.17 1.79 16 15 H 0.07 1.41 7.64 -51.93 -0.40 1.01 16 16 C -0.18 -2.97 8.40 37.15 0.31 -2.66 16 17 C -0.13 -1.98 5.01 -90.62 -0.45 -2.43 16 18 C -0.17 -2.35 10.18 -26.73 -0.27 -2.62 16 19 C -0.19 -2.32 9.81 -26.73 -0.26 -2.58 16 20 H 0.08 1.63 7.84 -52.48 -0.41 1.22 16 21 H 0.08 1.55 8.06 -52.49 -0.42 1.13 16 22 H 0.10 2.00 7.90 -52.49 -0.41 1.59 16 23 H 0.03 0.61 6.61 -51.93 -0.34 0.26 16 24 H 0.06 1.03 5.97 -51.93 -0.31 0.72 16 25 H 0.02 0.61 7.78 -51.93 -0.40 0.21 16 26 H 0.00 -0.07 7.14 -51.93 -0.37 -0.44 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.05 0.86 6.70 -51.93 -0.35 0.51 16 29 H 0.05 0.72 7.62 -51.93 -0.40 0.32 16 30 H 0.06 1.11 7.11 -51.93 -0.37 0.74 16 31 H 0.10 1.53 6.34 -51.93 -0.33 1.20 16 32 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 33 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.08 7.92 -51.93 -0.41 0.67 16 LS Contribution 279.69 15.07 4.21 4.21 Total: -1.00 -29.15 279.69 -7.81 -36.95 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.64 Total: 0.37 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.08 Total: -20.02 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.28 Total: -38.53 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.15 -7.81 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308131400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.768 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds