Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46943 * 2 1 4 4 C 1.50694 * 109.47241 * 239.99742 * 2 1 3 5 5 H 1.08001 * 120.00207 * 275.00611 * 4 2 1 6 6 C 1.37879 * 120.00016 * 95.00577 * 4 2 1 7 7 N 1.31509 * 120.00199 * 184.91656 * 6 4 2 8 8 Si 1.86798 * 120.00086 * 4.90693 * 6 4 2 9 9 H 1.48505 * 109.46962 * 84.83189 * 8 6 4 10 10 H 1.48496 * 109.47410 * 204.83625 * 8 6 4 11 11 H 1.48508 * 109.47135 * 324.83632 * 8 6 4 12 12 N 1.46903 * 109.46671 * 119.99719 * 2 1 3 13 13 C 1.46895 * 111.00155 * 274.99977 * 12 2 1 14 14 C 1.53004 * 109.47409 * 180.02562 * 13 12 2 15 15 H 1.08999 * 115.54711 * 330.58893 * 14 13 12 16 16 C 1.53000 * 117.49754 * 116.25077 * 14 13 12 17 17 C 1.52998 * 117.49959 * 184.91150 * 14 13 12 18 18 H 1.09002 * 117.50118 * 0.02562 * 17 14 13 19 19 C 1.53007 * 117.49482 * 144.99733 * 17 14 13 20 20 C 1.52995 * 117.49660 * 248.62081 * 19 17 14 21 21 C 1.52998 * 117.49482 * 179.97438 * 19 17 14 22 22 H 1.09000 * 109.46888 * 175.04970 * 1 2 3 23 23 H 1.08998 * 109.47512 * 295.05600 * 1 2 3 24 24 H 1.08998 * 109.47099 * 55.05708 * 1 2 3 25 25 H 0.96997 * 120.00402 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99628 * 151.04735 * 12 2 1 27 27 H 1.09004 * 109.47379 * 60.00020 * 13 12 2 28 28 H 1.09004 * 109.47273 * 300.00584 * 13 12 2 29 29 H 1.08996 * 117.49871 * 214.98281 * 16 14 13 30 30 H 1.09000 * 117.49920 * 0.02562 * 16 14 13 31 31 H 1.09002 * 115.54817 * 34.33450 * 19 17 14 32 32 H 1.08998 * 117.50562 * 0.02562 * 20 19 17 33 33 H 1.09004 * 117.49908 * 145.02398 * 20 19 17 34 34 H 1.09000 * 117.49899 * 214.98244 * 21 19 17 35 35 H 1.08998 * 117.50197 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3604 0.0120 -2.3580 7 7 2.7061 -0.6132 -3.4621 8 14 2.3136 1.8790 -2.3175 9 1 3.5991 2.3949 -1.7820 10 1 2.1059 2.3990 -3.6928 11 1 1.1985 2.3274 -1.4451 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5961 -0.5328 3.5743 15 1 2.3632 -1.5972 3.6026 16 6 3.9322 -0.0858 4.1708 17 6 2.6249 0.2198 4.9061 18 1 2.2775 1.2530 4.9080 19 6 2.3245 -0.5795 6.1758 20 6 1.0176 -0.2739 6.9102 21 6 2.3539 0.1730 7.5076 22 1 -0.3633 -1.0238 -0.0887 23 1 -0.3634 0.4352 0.9309 24 1 -0.3633 0.5886 -0.8424 25 1 2.9373 -0.1049 -4.2552 26 1 2.9173 -1.1205 1.0288 27 1 1.0870 0.6164 2.5525 28 1 2.7588 1.0463 2.1182 29 1 4.5782 -0.8562 4.5919 30 1 4.4451 0.7466 3.6891 31 1 2.6716 -1.6127 6.1739 32 1 0.3715 0.4961 6.4887 33 1 0.5044 -1.1063 7.3917 34 1 2.7196 -0.3655 8.3819 35 1 2.5877 1.2373 7.4794 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308144927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = 18.760396 kcal Electronic energy + Delta-G solvation = -13448.134244 eV Core-core repulsion = 11253.372219 eV Total energy + Delta-G solvation = -2194.762024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68395 -37.77174 -36.15668 -34.27022 -31.26387 -27.45801 -26.25898 -24.45247 -23.16063 -21.64728 -21.52437 -20.86577 -19.08830 -17.16189 -16.68621 -16.11166 -15.76324 -15.26271 -14.83468 -14.58257 -14.11048 -13.87374 -13.63054 -12.95340 -12.90745 -12.61959 -12.41887 -12.29181 -12.14651 -12.03384 -11.97867 -11.81452 -11.43499 -11.08682 -10.79603 -10.64436 -10.20023 -9.09305 -8.32794 -6.38414 1.30350 1.32531 1.43440 2.30371 2.59572 3.00336 3.29168 3.37810 3.76182 3.93482 4.05844 4.18589 4.34191 4.39500 4.42787 4.49232 4.53483 4.75719 4.83321 4.87038 4.90627 4.95499 5.00615 5.06734 5.09284 5.24906 5.30744 5.34665 5.44629 5.50103 5.68546 6.04499 6.54342 6.68152 6.84972 7.31104 8.84043 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053822 B = 0.005891 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.108363 B = 4751.769920 C = 4798.709295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.181 3.819 3 H 0.003 0.997 4 C -0.522 4.522 5 H 0.037 0.963 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.941 3.059 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.249 1.249 12 N -0.686 5.686 13 C 0.090 3.910 14 C -0.146 4.146 15 H 0.104 0.896 16 C -0.171 4.171 17 C -0.107 4.107 18 H 0.103 0.897 19 C -0.133 4.133 20 C -0.180 4.180 21 C -0.169 4.169 22 H 0.042 0.958 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.267 0.733 26 H 0.336 0.664 27 H 0.067 0.933 28 H 0.017 0.983 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 4.603 19.759 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 H 0.020 0.980 4 C -0.561 4.561 5 H 0.055 0.945 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.765 3.235 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.172 1.172 12 N -0.317 5.317 13 C -0.039 4.039 14 C -0.165 4.165 15 H 0.122 0.878 16 C -0.208 4.208 17 C -0.126 4.126 18 H 0.121 0.879 19 C -0.152 4.152 20 C -0.217 4.217 21 C -0.206 4.206 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.032 4.382 19.742 20.249 hybrid contribution 0.878 0.964 -0.966 1.622 sum -0.154 5.346 18.776 19.523 Atomic orbital electron populations 1.21750 0.96761 1.00398 0.99015 1.19470 0.93471 0.91946 0.87941 0.97954 1.21289 1.43424 0.94265 0.97113 0.94499 1.25877 0.94072 1.03447 0.94730 1.70042 1.47775 1.37971 1.02592 0.85831 0.79778 0.80190 0.77677 1.19421 1.20935 1.17246 1.60603 1.32843 1.33272 1.04964 1.21545 0.99481 0.93063 0.89816 1.22274 1.01457 0.99885 0.92881 0.87829 1.23185 0.90601 1.03557 1.03483 1.21824 1.01215 0.98889 0.90687 0.87897 1.21717 1.02890 0.99247 0.91310 1.23008 0.90856 1.03933 1.03857 1.23014 1.00571 1.01017 0.95975 0.93893 0.93327 0.94397 0.92363 0.84623 0.91460 0.96498 0.87885 0.89032 0.87861 0.88964 0.88002 0.87643 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 9.42 71.98 0.68 -4.58 16 2 C 0.18 8.58 2.26 44.17 0.10 8.68 16 3 H 0.00 0.13 4.95 -2.39 -0.01 0.12 16 4 C -0.52 -29.97 8.84 25.60 0.23 -29.74 16 5 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 6 C 0.02 0.99 5.47 84.66 0.46 1.45 16 7 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 8 Si 0.94 44.16 26.99 68.60 1.85 46.01 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.25 -10.91 6.82 99.48 0.68 -10.24 16 12 N -0.69 -28.56 6.30 -495.44 -3.12 -31.68 16 13 C 0.09 3.05 5.76 86.31 0.50 3.54 16 14 C -0.15 -4.07 5.67 -10.79 -0.06 -4.13 16 15 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 16 C -0.17 -4.05 9.90 30.62 0.30 -3.75 16 17 C -0.11 -2.43 5.57 -10.77 -0.06 -2.49 16 18 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 19 C -0.13 -2.60 5.85 -10.79 -0.06 -2.66 16 20 C -0.18 -3.11 10.25 30.61 0.31 -2.79 16 21 C -0.17 -2.66 10.25 30.61 0.31 -2.35 16 22 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 1.82 7.35 -2.39 -0.02 1.80 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.34 14.46 8.35 -89.69 -0.75 13.71 16 27 H 0.07 2.22 7.36 -2.38 -0.02 2.21 16 28 H 0.02 0.58 7.79 -2.38 -0.02 0.56 16 29 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 2.18 8.03 -2.39 -0.02 2.16 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -62.47 289.15 2.01 -60.46 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.27 Total: 22.52 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 2.71 Total: -38.83 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -2.82 Total: -90.16 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.85 Total: 46.01 kcal Total: -62.47 2.01 -60.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308144927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.219 kcal (2) G-P(sol) polarization free energy of solvation -62.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds