Wall clock time and date at job start Mon Mar 30 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47475 * 2 1 4 4 C 1.50709 * 109.47195 * 239.99588 * 2 1 3 5 5 H 1.07999 * 119.99992 * 240.00146 * 4 2 1 6 6 C 1.37875 * 119.99418 * 60.00036 * 4 2 1 7 7 N 1.31511 * 120.00548 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99691 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47207 * 89.99817 * 8 6 4 10 10 H 1.48499 * 109.47438 * 210.00228 * 8 6 4 11 11 H 1.48504 * 109.46975 * 330.00007 * 8 6 4 12 12 N 1.46907 * 109.47295 * 119.99971 * 2 1 3 13 13 C 1.46894 * 110.99923 * 274.99891 * 12 2 1 14 14 C 1.53002 * 109.47391 * 179.97438 * 13 12 2 15 15 H 1.09000 * 115.55766 * 29.29388 * 14 13 12 16 16 C 1.53002 * 117.49773 * 243.61072 * 14 13 12 17 17 C 1.53000 * 60.02940 * 252.51785 * 16 14 13 18 18 H 1.09008 * 117.49673 * 107.47884 * 17 16 14 19 19 C 1.52996 * 117.49997 * 252.49592 * 17 16 14 20 20 C 1.53005 * 117.50055 * 197.23111 * 19 17 16 21 21 C 1.53005 * 59.99993 * 252.51669 * 20 19 17 22 22 H 1.09003 * 109.47240 * 60.00132 * 1 2 3 23 23 H 1.09005 * 109.47298 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47308 * 300.00431 * 1 2 3 25 25 H 0.96996 * 119.99979 * 180.02562 * 7 6 4 26 26 H 1.00899 * 111.00205 * 151.04247 * 12 2 1 27 27 H 1.09007 * 109.47396 * 59.99947 * 13 12 2 28 28 H 1.08996 * 109.47186 * 300.00034 * 13 12 2 29 29 H 1.09002 * 117.49918 * 145.01819 * 16 14 13 30 30 H 1.09002 * 117.49754 * 0.02562 * 16 14 13 31 31 H 1.09001 * 115.55415 * 342.94250 * 19 17 16 32 32 H 1.09004 * 117.49785 * 0.02562 * 20 19 17 33 33 H 1.08998 * 117.49690 * 145.02173 * 20 19 17 34 34 H 1.09002 * 117.49444 * 252.51087 * 21 20 19 35 35 H 1.08991 * 117.52321 * 107.48293 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3448 -2.1618 -4.4123 10 1 2.4873 -0.1405 -5.1121 11 1 3.6308 -1.7567 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5331 3.5745 15 1 3.2673 -1.3658 3.3673 16 6 1.6456 -0.6713 4.7663 17 6 2.8440 0.2763 4.8496 18 1 2.6424 1.3470 4.8134 19 6 4.0174 -0.1449 5.7365 20 6 5.0168 0.9383 6.1474 21 6 5.4160 -0.1195 5.1166 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7089 1.1612 -3.4844 26 1 2.9173 -1.1206 1.0288 27 1 1.0871 0.6163 2.5526 28 1 2.7588 1.0461 2.1182 29 1 1.6933 -1.5949 5.3433 30 1 0.6557 -0.2242 4.6756 31 1 3.8016 -0.9315 6.4596 32 1 4.8380 1.9512 5.7863 33 1 5.4585 0.8646 7.1412 34 1 6.1204 -0.8891 5.4322 35 1 5.5001 0.1969 4.0770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308144929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:51 Heat of formation + Delta-G solvation = 37.144018 kcal Electronic energy + Delta-G solvation = -13468.558677 eV Core-core repulsion = 11274.593826 eV Total energy + Delta-G solvation = -2193.964851 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.64643 -36.14468 -34.71738 -32.22630 -28.78211 -25.47211 -24.61143 -23.32013 -22.43472 -20.56628 -19.88675 -19.43410 -16.46368 -15.73681 -15.07255 -14.88864 -14.20772 -13.74987 -13.45511 -12.99856 -12.57736 -11.84298 -11.63902 -11.50742 -11.32803 -11.00663 -10.89132 -10.74219 -10.63966 -10.56527 -10.27738 -10.11946 -10.01688 -9.60052 -9.21256 -8.79199 -8.44984 -7.20225 -6.00756 -4.07155 3.31206 3.37319 3.40439 3.64112 4.10154 4.41292 4.60133 4.87255 4.95118 5.11341 5.23440 5.30661 5.38129 5.50722 5.59743 5.80956 5.83340 5.86607 6.03809 6.09106 6.13573 6.23660 6.32564 6.36797 6.69415 6.91584 7.17117 7.26902 7.54264 7.80463 7.92935 8.30172 8.43480 8.71657 9.04106 9.58776 11.05676 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047919 B = 0.005809 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.180863 B = 4818.861283 C = 5124.364064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.687 5.687 13 C 0.090 3.910 14 C -0.127 4.127 15 H 0.104 0.896 16 C -0.167 4.167 17 C -0.133 4.133 18 H 0.102 0.898 19 C -0.119 4.119 20 C -0.180 4.180 21 C -0.178 4.178 22 H 0.080 0.920 23 H 0.031 0.969 24 H 0.003 0.997 25 H 0.261 0.739 26 H 0.330 0.670 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 -0.596 13.852 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.318 5.318 13 C -0.040 4.040 14 C -0.145 4.145 15 H 0.122 0.878 16 C -0.204 4.204 17 C -0.151 4.151 18 H 0.120 0.880 19 C -0.137 4.137 20 C -0.217 4.217 21 C -0.215 4.215 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.292 -0.714 13.861 14.528 hybrid contribution 1.015 0.123 -1.062 1.474 sum 5.307 -0.592 12.800 13.869 Atomic orbital electron populations 1.21708 0.97927 0.99316 0.99253 1.19108 0.92626 0.92294 0.85692 0.98285 1.21274 1.31395 1.12452 0.90479 0.92222 1.24925 0.95084 0.94987 0.99049 1.69900 1.36757 1.22891 1.23420 0.86518 0.79216 0.79317 0.82452 1.20607 1.21289 1.19944 1.60702 1.32024 1.33144 1.05889 1.21487 0.99037 0.93416 0.90067 1.22463 1.01818 1.01127 0.89122 0.87835 1.23065 0.94557 1.00464 1.02314 1.21873 0.96236 0.97294 0.99711 0.88035 1.21727 0.89626 1.01171 1.01217 1.22962 1.03904 0.95344 0.99495 1.22966 0.97672 1.01823 0.98991 0.90162 0.94969 0.97797 0.92952 0.85331 0.91844 0.96162 0.89285 0.88911 0.88024 0.88861 0.89152 0.89110 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.15 0.34 -2.83 16 2 C 0.21 5.48 2.60 -68.86 -0.18 5.30 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.45 8.59 -34.44 -0.30 -14.75 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.69 -15.13 6.30 -107.95 -0.68 -15.81 16 13 C 0.09 1.68 5.77 -3.83 -0.02 1.66 16 14 C -0.13 -1.93 5.60 -90.58 -0.51 -2.44 16 15 H 0.10 1.60 8.13 -51.93 -0.42 1.18 16 16 C -0.17 -2.23 9.89 -26.73 -0.26 -2.50 16 17 C -0.13 -1.71 5.59 -90.59 -0.51 -2.22 16 18 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 19 C -0.12 -1.35 5.87 -90.62 -0.53 -1.88 16 20 C -0.18 -1.82 10.25 -26.73 -0.27 -2.09 16 21 C -0.18 -1.94 10.18 -26.73 -0.27 -2.21 16 22 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.33 7.07 8.21 -39.29 -0.32 6.74 16 27 H 0.06 1.22 7.17 -51.93 -0.37 0.84 16 28 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.24 8.03 -51.93 -0.42 0.83 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -28.49 289.30 -9.30 -37.79 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.98 Total: 4.75 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.61 Total: -22.34 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.05 Total: -41.00 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.49 -9.30 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308144929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.933 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds