Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47475 * 2 1 4 4 C 1.50709 * 109.47195 * 239.99588 * 2 1 3 5 5 H 1.07999 * 119.99992 * 240.00146 * 4 2 1 6 6 C 1.37875 * 119.99418 * 60.00036 * 4 2 1 7 7 N 1.31511 * 120.00548 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99691 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47207 * 89.99817 * 8 6 4 10 10 H 1.48499 * 109.47438 * 210.00228 * 8 6 4 11 11 H 1.48504 * 109.46975 * 330.00007 * 8 6 4 12 12 N 1.46907 * 109.47295 * 119.99971 * 2 1 3 13 13 C 1.46894 * 110.99923 * 274.99891 * 12 2 1 14 14 C 1.53002 * 109.47391 * 179.97438 * 13 12 2 15 15 H 1.09000 * 115.55766 * 29.29388 * 14 13 12 16 16 C 1.53002 * 117.49773 * 243.61072 * 14 13 12 17 17 C 1.53000 * 60.02940 * 252.51785 * 16 14 13 18 18 H 1.09008 * 117.49673 * 107.47884 * 17 16 14 19 19 C 1.52996 * 117.49997 * 252.49592 * 17 16 14 20 20 C 1.53005 * 117.50055 * 197.23111 * 19 17 16 21 21 C 1.53005 * 59.99993 * 252.51669 * 20 19 17 22 22 H 1.09003 * 109.47240 * 60.00132 * 1 2 3 23 23 H 1.09005 * 109.47298 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47308 * 300.00431 * 1 2 3 25 25 H 0.96996 * 119.99979 * 180.02562 * 7 6 4 26 26 H 1.00899 * 111.00205 * 151.04247 * 12 2 1 27 27 H 1.09007 * 109.47396 * 59.99947 * 13 12 2 28 28 H 1.08996 * 109.47186 * 300.00034 * 13 12 2 29 29 H 1.09002 * 117.49918 * 145.01819 * 16 14 13 30 30 H 1.09002 * 117.49754 * 0.02562 * 16 14 13 31 31 H 1.09001 * 115.55415 * 342.94250 * 19 17 16 32 32 H 1.09004 * 117.49785 * 0.02562 * 20 19 17 33 33 H 1.08998 * 117.49690 * 145.02173 * 20 19 17 34 34 H 1.09002 * 117.49444 * 252.51087 * 21 20 19 35 35 H 1.08991 * 117.52321 * 107.48293 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3448 -2.1618 -4.4123 10 1 2.4873 -0.1405 -5.1121 11 1 3.6308 -1.7567 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5331 3.5745 15 1 3.2673 -1.3658 3.3673 16 6 1.6456 -0.6713 4.7663 17 6 2.8440 0.2763 4.8496 18 1 2.6424 1.3470 4.8134 19 6 4.0174 -0.1449 5.7365 20 6 5.0168 0.9383 6.1474 21 6 5.4160 -0.1195 5.1166 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7089 1.1612 -3.4844 26 1 2.9173 -1.1206 1.0288 27 1 1.0871 0.6163 2.5526 28 1 2.7588 1.0461 2.1182 29 1 1.6933 -1.5949 5.3433 30 1 0.6557 -0.2242 4.6756 31 1 3.8016 -0.9315 6.4596 32 1 4.8380 1.9512 5.7863 33 1 5.4585 0.8646 7.1412 34 1 6.1204 -0.8891 5.4322 35 1 5.5001 0.1969 4.0770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308144929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = 21.229821 kcal Electronic energy + Delta-G solvation = -13469.248768 eV Core-core repulsion = 11274.593826 eV Total energy + Delta-G solvation = -2194.654942 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73052 -37.70012 -36.09544 -34.18692 -30.68781 -27.48143 -26.30388 -24.38222 -23.25870 -21.94512 -21.62367 -20.62149 -18.51187 -16.93535 -16.63728 -16.13902 -15.97204 -15.22654 -15.01479 -14.50184 -14.16570 -13.54032 -13.19192 -12.91247 -12.70794 -12.51000 -12.44069 -12.26035 -12.23571 -12.13343 -11.92760 -11.58785 -11.49350 -10.93651 -10.70215 -10.57545 -10.30584 -9.05325 -8.14397 -6.29206 1.42355 1.43405 1.53734 2.40922 2.66253 3.11108 3.14007 3.49709 3.84227 3.90025 4.08004 4.18642 4.24581 4.46077 4.49643 4.59202 4.76726 4.78652 4.82036 4.86404 4.96923 5.05262 5.05563 5.19639 5.28926 5.29425 5.32124 5.40822 5.48260 5.65987 5.84228 6.20181 6.46229 6.76406 6.98715 7.41481 8.91586 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047919 B = 0.005809 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.180863 B = 4818.861283 C = 5124.364064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.034 1.034 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.684 5.684 13 C 0.095 3.905 14 C -0.144 4.144 15 H 0.102 0.898 16 C -0.158 4.158 17 C -0.117 4.117 18 H 0.099 0.901 19 C -0.127 4.127 20 C -0.170 4.170 21 C -0.184 4.184 22 H 0.057 0.943 23 H 0.028 0.972 24 H 0.020 0.980 25 H 0.263 0.737 26 H 0.332 0.668 27 H 0.056 0.944 28 H 0.009 0.991 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 -1.451 14.889 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.016 1.016 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.314 5.314 13 C -0.035 4.035 14 C -0.162 4.162 15 H 0.121 0.879 16 C -0.195 4.195 17 C -0.135 4.135 18 H 0.117 0.883 19 C -0.145 4.145 20 C -0.207 4.207 21 C -0.221 4.221 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.010 -1.572 14.920 15.817 hybrid contribution 0.788 0.432 -1.340 1.614 sum 5.798 -1.140 13.579 14.809 Atomic orbital electron populations 1.21534 0.97710 0.98871 0.98950 1.18939 0.92815 0.90682 0.87097 1.01626 1.21591 1.31825 1.12740 0.91592 0.92185 1.25772 0.95125 0.95654 1.02158 1.70028 1.37508 1.24070 1.24241 0.85441 0.78884 0.78168 0.78423 1.20019 1.20816 1.19126 1.60633 1.32198 1.33340 1.05271 1.21459 0.98610 0.93070 0.90341 1.22238 1.03544 1.01851 0.88572 0.87946 1.23149 0.94432 1.01316 1.00619 1.21903 0.96782 0.97048 0.97804 0.88266 1.21769 0.89010 1.02332 1.01415 1.23052 1.02700 0.94813 1.00153 1.22990 0.97799 1.02797 0.98486 0.92404 0.95268 0.96118 0.92780 0.85044 0.92528 0.97251 0.87547 0.89018 0.86660 0.89125 0.87175 0.87702 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.83 9.19 71.98 0.66 -5.17 16 2 C 0.21 11.32 2.60 44.17 0.11 11.44 16 3 H -0.03 -1.98 7.80 -2.39 -0.02 -2.00 16 4 C -0.54 -30.39 8.59 25.60 0.22 -30.17 16 5 H 0.06 3.30 7.62 -2.91 -0.02 3.28 16 6 C 0.01 0.68 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 8 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.68 -30.40 6.30 -495.44 -3.12 -33.52 16 13 C 0.09 3.57 5.77 86.31 0.50 4.06 16 14 C -0.14 -4.25 5.60 -10.77 -0.06 -4.31 16 15 H 0.10 3.07 8.13 -2.39 -0.02 3.05 16 16 C -0.16 -3.93 9.89 30.60 0.30 -3.63 16 17 C -0.12 -2.83 5.59 -10.77 -0.06 -2.89 16 18 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 19 C -0.13 -2.57 5.87 -10.79 -0.06 -2.64 16 20 C -0.17 -3.03 10.25 30.60 0.31 -2.72 16 21 C -0.18 -3.68 10.18 30.60 0.31 -3.37 16 22 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 23 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.02 0.95 7.45 -2.39 -0.02 0.93 16 25 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 26 H 0.33 14.37 8.21 -89.70 -0.74 13.63 16 27 H 0.06 2.18 7.17 -2.38 -0.02 2.16 16 28 H 0.01 0.37 8.05 -2.39 -0.02 0.35 16 29 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.09 2.31 8.03 -2.39 -0.02 2.29 16 31 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 1.66 8.14 -2.38 -0.02 1.65 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -60.25 289.30 2.14 -58.10 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.31 Total: 21.39 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 2.69 Total: -38.26 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -2.88 Total: -87.18 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -60.25 2.14 -58.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308144929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.332 kcal (2) G-P(sol) polarization free energy of solvation -60.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds