Wall clock time and date at job start Mon Mar 30 2020 02:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47049 * 2 1 4 4 C 1.53005 * 109.46967 * 240.00061 * 2 1 3 5 5 C 1.52999 * 117.49770 * 128.74934 * 4 2 1 6 6 C 1.52993 * 117.50038 * 60.08658 * 4 2 1 7 7 N 1.46502 * 109.47223 * 120.00236 * 2 1 3 8 8 C 1.36935 * 119.99907 * 59.99230 * 7 2 1 9 9 H 1.08000 * 120.00057 * 33.70581 * 8 7 2 10 10 C 1.38808 * 120.00252 * 213.69769 * 8 7 2 11 11 N 1.31623 * 119.99575 * 22.15660 * 10 8 7 12 12 Si 1.86798 * 120.00528 * 202.15917 * 10 8 7 13 13 H 1.48499 * 109.47186 * 59.99431 * 12 10 8 14 14 H 1.48493 * 109.47602 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46623 * 300.00225 * 12 10 8 16 16 C 1.46496 * 119.99713 * 240.00314 * 7 2 1 17 17 C 1.53010 * 109.46742 * 275.46315 * 16 7 2 18 18 C 1.52998 * 117.49497 * 243.62217 * 17 16 7 19 19 C 1.52997 * 117.49552 * 175.00077 * 17 16 7 20 20 H 1.08995 * 109.47049 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46970 * 300.00192 * 1 2 3 22 22 H 1.09005 * 109.46697 * 60.00098 * 1 2 3 23 23 H 1.08999 * 115.54559 * 274.41658 * 4 2 1 24 24 H 1.08994 * 117.50215 * 359.97438 * 5 4 2 25 25 H 1.08999 * 117.49582 * 145.02108 * 5 4 2 26 26 H 1.08997 * 117.49984 * 214.98300 * 6 4 2 27 27 H 1.09009 * 117.50044 * 359.97438 * 6 4 2 28 28 H 0.97006 * 119.99486 * 180.02562 * 11 10 8 29 29 H 1.09003 * 109.47417 * 155.46935 * 16 7 2 30 30 H 1.08997 * 109.47505 * 35.46396 * 16 7 2 31 31 H 1.09000 * 115.54798 * 29.33609 * 17 16 7 32 32 H 1.08997 * 117.50487 * 0.02562 * 18 17 16 33 33 H 1.09003 * 117.49297 * 145.02259 * 18 17 16 34 34 H 1.08997 * 117.49701 * 214.97998 * 19 17 16 35 35 H 1.08999 * 117.50020 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.0764 0.0039 -2.1101 6 6 1.6374 -0.1484 -2.6096 7 7 2.0184 -0.6907 1.1961 8 6 1.6875 -2.0016 1.4129 9 1 1.5727 -2.6750 0.5763 10 6 1.4997 -2.4652 2.7077 11 7 1.2058 -1.6201 3.6730 12 14 1.6643 -4.2882 3.0803 13 1 3.0342 -4.7431 2.7315 14 1 1.4174 -4.5224 4.5257 15 1 0.6714 -5.0486 2.2795 16 6 2.8606 0.0213 2.1605 17 6 4.3190 -0.0320 1.7008 18 6 5.3155 -0.7702 2.5968 19 6 5.3457 0.7574 2.5155 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 2.1253 -1.8046 -1.1647 24 1 3.3945 0.9950 -1.7867 25 1 3.8432 -0.6024 -2.5922 26 1 1.4582 -0.8548 -3.4201 27 1 1.0088 0.7422 -2.6146 28 1 1.0749 -1.9440 4.5780 29 1 2.7707 -0.4501 3.1391 30 1 2.5383 1.0604 2.2268 31 1 4.4703 -0.0920 0.6230 32 1 4.9322 -1.2182 3.5136 33 1 6.1227 -1.3162 2.1085 34 1 6.1727 1.2163 1.9737 35 1 4.9823 1.3143 3.3791 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308152196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:34 Heat of formation + Delta-G solvation = 50.550137 kcal Electronic energy + Delta-G solvation = -14444.109067 eV Core-core repulsion = 12250.725549 eV Total energy + Delta-G solvation = -2193.383518 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.39743 -37.94842 -35.98867 -33.34550 -30.70114 -27.92006 -25.60264 -23.58526 -23.09222 -23.01202 -21.08556 -20.87268 -18.22500 -17.19956 -16.43695 -16.13768 -15.40169 -15.21193 -14.98623 -14.48740 -13.70547 -13.25746 -13.25147 -13.04903 -12.71392 -12.50843 -12.31682 -12.29414 -12.19148 -12.00353 -11.79437 -11.44332 -11.13928 -10.99285 -10.67508 -10.53980 -10.26177 -8.50114 -7.76243 -5.29910 1.45495 1.48614 1.54122 2.53932 3.07484 3.13462 3.32306 3.64191 4.01159 4.14153 4.23650 4.27167 4.32832 4.45595 4.61423 4.76865 4.82646 4.84817 4.90035 4.95240 5.03192 5.08692 5.10826 5.26107 5.36186 5.36669 5.37525 5.45500 5.54410 5.67738 5.75411 5.94219 6.53970 7.25644 7.98427 8.48161 9.21876 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.014123 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.392912 B = 1982.149488 C = 2706.906133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.195 3.805 3 H 0.054 0.946 4 C -0.162 4.162 5 C -0.174 4.174 6 C -0.167 4.167 7 N -0.587 5.587 8 C -0.238 4.238 9 H 0.054 0.946 10 C -0.040 4.040 11 N -0.921 5.921 12 Si 0.945 3.055 13 H -0.283 1.283 14 H -0.296 1.296 15 H -0.278 1.278 16 C 0.173 3.827 17 C -0.161 4.161 18 C -0.185 4.185 19 C -0.167 4.167 20 H 0.035 0.965 21 H 0.026 0.974 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.248 0.752 29 H 0.073 0.927 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 4.278 -7.690 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.089 3.911 3 H 0.072 0.928 4 C -0.183 4.183 5 C -0.211 4.211 6 C -0.205 4.205 7 N -0.307 5.307 8 C -0.369 4.369 9 H 0.071 0.929 10 C -0.236 4.236 11 N -0.566 5.566 12 Si 0.774 3.226 13 H -0.209 1.209 14 H -0.222 1.222 15 H -0.204 1.204 16 C 0.047 3.953 17 C -0.182 4.182 18 C -0.223 4.223 19 C -0.205 4.205 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.540 4.252 -7.517 9.757 hybrid contribution -0.068 -1.202 0.653 1.370 sum 4.473 3.050 -6.863 8.741 Atomic orbital electron populations 1.21956 0.97576 1.00435 0.99498 1.20066 0.92198 0.93297 0.85585 0.92769 1.22652 1.04514 0.98813 0.92272 1.22954 0.92522 1.01714 1.03951 1.22970 0.97639 1.03308 0.96571 1.43983 1.54859 1.09463 1.22363 1.19026 1.40249 0.86306 0.91317 0.92852 1.25576 1.00416 1.00142 0.97425 1.70107 1.50655 1.34795 1.01062 0.85682 0.78097 0.82491 0.76302 1.20931 1.22191 1.20422 1.20488 0.86014 0.93244 0.95552 1.23106 0.93781 1.04287 0.96978 1.22825 1.02550 0.95113 1.01764 1.22935 1.01667 0.93154 1.02737 0.94605 0.95485 0.91516 0.90420 0.88912 0.88947 0.88318 0.88140 0.94326 0.90939 0.96364 0.89151 0.91345 0.88754 0.87272 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.00 71.98 0.65 -4.81 16 2 C 0.19 8.00 2.98 44.99 0.13 8.13 16 3 H 0.05 2.12 7.62 -2.39 -0.02 2.10 16 4 C -0.16 -5.83 5.18 -10.79 -0.06 -5.89 16 5 C -0.17 -5.05 10.18 30.62 0.31 -4.74 16 6 C -0.17 -4.59 9.74 30.62 0.30 -4.29 16 7 N -0.59 -28.72 2.39 -678.01 -1.62 -30.34 16 8 C -0.24 -12.87 8.20 84.03 0.69 -12.18 16 9 H 0.05 2.91 6.81 -2.91 -0.02 2.89 16 10 C -0.04 -2.20 4.92 84.86 0.42 -1.78 16 11 N -0.92 -53.82 11.32 21.65 0.25 -53.58 16 12 Si 0.94 45.25 29.61 68.60 2.03 47.28 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 C 0.17 8.25 5.46 86.38 0.47 8.72 16 17 C -0.16 -6.41 6.01 -10.79 -0.06 -6.48 16 18 C -0.19 -6.90 10.18 30.59 0.31 -6.59 16 19 C -0.17 -5.41 10.25 30.59 0.31 -5.10 16 20 H 0.03 1.56 7.66 -2.39 -0.02 1.55 16 21 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.07 2.16 7.29 -2.38 -0.02 2.15 16 23 H 0.08 3.20 6.80 -2.39 -0.02 3.18 16 24 H 0.09 2.57 8.05 -2.39 -0.02 2.55 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.10 2.51 7.61 -2.38 -0.02 2.50 16 28 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 29 H 0.07 3.97 5.06 -2.39 -0.01 3.95 16 30 H 0.02 0.85 8.04 -2.39 -0.02 0.83 16 31 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 32 H 0.07 2.82 8.03 -2.39 -0.02 2.80 16 33 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -59.01 285.03 5.16 -53.85 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.04 Total: 17.80 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 3.47 Total: -35.01 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.38 Total: -83.92 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -59.01 5.16 -53.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308152196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.397 kcal (2) G-P(sol) polarization free energy of solvation -59.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds