Wall clock time and date at job start Mon Mar 30 2020 02:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46587 * 2 1 4 4 C 1.50697 * 109.47133 * 240.00663 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.34714 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34486 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46896 * 109.47556 * 120.00316 * 2 1 3 13 13 C 1.46896 * 110.99854 * 275.00478 * 12 2 1 14 14 H 1.09000 * 112.85754 * 23.79822 * 13 12 2 15 15 C 1.53791 * 113.61469 * 252.49392 * 13 12 2 16 16 C 1.53774 * 87.08044 * 220.02137 * 15 13 12 17 17 C 1.53774 * 87.08819 * 25.42925 * 16 15 13 18 18 H 1.08996 * 113.69571 * 220.01196 * 17 16 15 19 19 C 1.53000 * 113.61364 * 89.11348 * 17 16 15 20 20 C 1.52998 * 117.50182 * 151.25397 * 19 17 16 21 21 C 1.53005 * 117.49700 * 82.59192 * 19 17 16 22 22 H 1.09006 * 109.46600 * 174.96749 * 1 2 3 23 23 H 1.08998 * 109.47127 * 294.96850 * 1 2 3 24 24 H 1.08996 * 109.47228 * 54.96849 * 1 2 3 25 25 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99871 * 38.95404 * 12 2 1 27 27 H 1.09000 * 113.60498 * 334.57119 * 15 13 12 28 28 H 1.08995 * 113.61363 * 105.46761 * 15 13 12 29 29 H 1.09001 * 113.61132 * 270.87815 * 16 15 13 30 30 H 1.09000 * 113.69261 * 139.99617 * 16 15 13 31 31 H 1.09002 * 115.55359 * 296.92361 * 19 17 16 32 32 H 1.09009 * 117.49532 * 359.97438 * 20 19 17 33 33 H 1.08998 * 117.50424 * 145.02151 * 20 19 17 34 34 H 1.08996 * 117.49785 * 214.97799 * 21 19 17 35 35 H 1.08994 * 117.49818 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5802 -1.6360 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.2152 0.9978 -2.5939 8 14 2.2878 -1.1283 -4.0101 9 1 1.2111 -2.0864 -4.3680 10 1 2.5007 -0.1807 -5.1336 11 1 3.5451 -1.8727 -3.7455 12 7 2.0198 -0.6925 1.1993 13 6 2.0825 0.2225 2.3468 14 1 1.4068 1.0721 2.2483 15 6 3.5154 0.6155 2.7437 16 6 3.0601 0.4911 4.2072 17 6 1.9846 -0.4878 3.7073 18 1 1.0183 -0.3638 4.1960 19 6 2.4505 -1.9448 3.6728 20 6 1.3887 -3.0306 3.8589 21 6 2.3887 -2.7373 4.9802 22 1 -0.3633 -1.0238 -0.0902 23 1 -0.3633 0.4338 0.9316 24 1 -0.3633 0.5899 -0.8415 25 1 1.0462 1.3718 -3.4728 26 1 1.4497 -1.4980 1.4099 27 1 4.2656 -0.1208 2.4557 28 1 3.7852 1.6314 2.4552 29 1 2.6526 1.4149 4.6178 30 1 3.8018 0.0293 4.8589 31 1 3.2753 -2.1587 2.9931 32 1 0.3583 -2.7069 4.0063 33 1 1.5152 -3.9589 3.3019 34 1 3.1727 -3.4728 5.1603 35 1 2.0159 -2.2208 5.8646 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308269743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:36 Heat of formation + Delta-G solvation = 35.163947 kcal Electronic energy + Delta-G solvation = -14090.514946 eV Core-core repulsion = 11896.464234 eV Total energy + Delta-G solvation = -2194.050713 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35725 -35.87606 -34.53165 -31.77449 -27.91938 -25.56972 -25.05523 -23.30850 -22.09236 -21.47360 -20.08802 -18.03914 -16.42792 -15.60426 -15.21631 -14.58101 -14.05356 -13.55895 -13.23163 -12.85774 -12.39432 -11.78178 -11.58329 -11.52227 -11.34721 -10.97885 -10.92070 -10.73380 -10.46151 -10.37108 -10.21079 -10.02410 -9.83020 -9.53373 -9.35931 -8.86202 -8.29855 -7.14746 -5.94457 -3.94694 3.36036 3.41812 3.45949 3.98169 4.49044 4.75705 4.97137 5.02599 5.26764 5.38404 5.39947 5.46378 5.54242 5.75139 5.75729 5.78386 6.04318 6.09823 6.13769 6.24562 6.29069 6.48065 6.59604 6.69314 6.79831 6.82546 6.89209 7.13255 7.47770 7.68907 7.95374 8.32789 8.67058 8.72922 9.12437 9.69430 11.14917 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040384 B = 0.007866 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.185359 B = 3558.749402 C = 3781.226082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.208 3.792 3 H 0.038 0.962 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.669 5.669 13 C 0.072 3.928 14 H 0.062 0.938 15 C -0.124 4.124 16 C -0.137 4.137 17 C -0.087 4.087 18 H 0.064 0.936 19 C -0.115 4.115 20 C -0.180 4.180 21 C -0.187 4.187 22 H 0.030 0.970 23 H 0.006 0.994 24 H 0.071 0.929 25 H 0.259 0.741 26 H 0.327 0.673 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 -3.429 12.477 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.100 3.900 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.298 5.298 13 C -0.039 4.039 14 H 0.079 0.921 15 C -0.162 4.162 16 C -0.175 4.175 17 C -0.106 4.106 18 H 0.082 0.918 19 C -0.133 4.133 20 C -0.218 4.218 21 C -0.224 4.224 22 H 0.049 0.951 23 H 0.025 0.975 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.686 -3.218 12.152 12.683 hybrid contribution -0.875 -0.284 -0.737 1.179 sum 0.811 -3.502 11.415 11.968 Atomic orbital electron populations 1.22392 1.01246 0.99623 0.98905 1.19230 0.89013 0.94823 0.86921 0.94427 1.21124 1.34054 1.08186 0.89812 0.92094 1.24952 0.95662 0.94889 0.98985 1.69947 1.44054 1.16328 1.23490 0.86580 0.78881 0.79662 0.82658 1.20823 1.21480 1.19971 1.60893 1.57448 1.08577 1.02898 1.22912 0.96293 0.95409 0.89315 0.92058 1.22999 0.98217 1.01085 0.93945 1.22772 0.98645 0.98615 0.97419 1.22197 0.97774 0.92578 0.98073 0.91791 1.21894 1.01455 0.90888 0.99037 1.22942 0.95595 1.00601 1.02614 1.22905 1.02690 1.03824 0.93003 0.95071 0.97473 0.91031 0.93159 0.85466 0.89652 0.92519 0.90868 0.91691 0.86654 0.89271 0.88879 0.89275 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 8.94 37.16 0.33 -3.59 16 2 C 0.21 5.29 2.30 -68.87 -0.16 5.14 16 3 H 0.04 1.07 7.82 -51.93 -0.41 0.66 16 4 C -0.49 -13.84 8.77 -34.44 -0.30 -14.14 16 5 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 6 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 7 N -0.90 -26.32 11.98 55.43 0.66 -25.65 16 8 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 N -0.67 -14.21 5.72 -100.10 -0.57 -14.79 16 13 C 0.07 1.30 3.69 -66.89 -0.25 1.06 16 14 H 0.06 1.19 7.49 -51.93 -0.39 0.80 16 15 C -0.12 -2.04 7.59 -25.92 -0.20 -2.24 16 16 C -0.14 -1.86 7.67 -25.93 -0.20 -2.06 16 17 C -0.09 -1.29 3.88 -89.81 -0.35 -1.63 16 18 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 19 C -0.11 -1.61 3.84 -90.62 -0.35 -1.95 16 20 C -0.18 -2.30 10.24 -26.69 -0.27 -2.58 16 21 C -0.19 -2.20 10.26 -26.69 -0.27 -2.47 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.01 0.14 7.68 -51.93 -0.40 -0.26 16 24 H 0.07 1.90 6.84 -51.93 -0.36 1.54 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.33 6.69 7.46 -39.29 -0.29 6.40 16 27 H 0.08 1.47 7.92 -51.93 -0.41 1.05 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.12 1.80 7.75 -51.93 -0.40 1.40 16 32 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 283.35 15.07 4.27 4.27 Total: -1.00 -28.35 283.35 -8.77 -37.12 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.00 Total: 5.24 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -2.11 Total: -22.99 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.09 Total: -40.44 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.35 -8.77 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308269743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.284 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds