Wall clock time and date at job start Mon Mar 30 2020 02:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46587 * 2 1 4 4 C 1.50697 * 109.47133 * 240.00663 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.34714 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34486 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46896 * 109.47556 * 120.00316 * 2 1 3 13 13 C 1.46896 * 110.99854 * 275.00478 * 12 2 1 14 14 H 1.09000 * 112.85754 * 23.79822 * 13 12 2 15 15 C 1.53791 * 113.61469 * 252.49392 * 13 12 2 16 16 C 1.53774 * 87.08044 * 220.02137 * 15 13 12 17 17 C 1.53774 * 87.08819 * 25.42925 * 16 15 13 18 18 H 1.08996 * 113.69571 * 220.01196 * 17 16 15 19 19 C 1.53000 * 113.61364 * 89.11348 * 17 16 15 20 20 C 1.52998 * 117.50182 * 151.25397 * 19 17 16 21 21 C 1.53005 * 117.49700 * 82.59192 * 19 17 16 22 22 H 1.09006 * 109.46600 * 174.96749 * 1 2 3 23 23 H 1.08998 * 109.47127 * 294.96850 * 1 2 3 24 24 H 1.08996 * 109.47228 * 54.96849 * 1 2 3 25 25 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99871 * 38.95404 * 12 2 1 27 27 H 1.09000 * 113.60498 * 334.57119 * 15 13 12 28 28 H 1.08995 * 113.61363 * 105.46761 * 15 13 12 29 29 H 1.09001 * 113.61132 * 270.87815 * 16 15 13 30 30 H 1.09000 * 113.69261 * 139.99617 * 16 15 13 31 31 H 1.09002 * 115.55359 * 296.92361 * 19 17 16 32 32 H 1.09009 * 117.49532 * 359.97438 * 20 19 17 33 33 H 1.08998 * 117.50424 * 145.02151 * 20 19 17 34 34 H 1.08996 * 117.49785 * 214.97799 * 21 19 17 35 35 H 1.08994 * 117.49818 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5802 -1.6360 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.2152 0.9978 -2.5939 8 14 2.2878 -1.1283 -4.0101 9 1 1.2111 -2.0864 -4.3680 10 1 2.5007 -0.1807 -5.1336 11 1 3.5451 -1.8727 -3.7455 12 7 2.0198 -0.6925 1.1993 13 6 2.0825 0.2225 2.3468 14 1 1.4068 1.0721 2.2483 15 6 3.5154 0.6155 2.7437 16 6 3.0601 0.4911 4.2072 17 6 1.9846 -0.4878 3.7073 18 1 1.0183 -0.3638 4.1960 19 6 2.4505 -1.9448 3.6728 20 6 1.3887 -3.0306 3.8589 21 6 2.3887 -2.7373 4.9802 22 1 -0.3633 -1.0238 -0.0902 23 1 -0.3633 0.4338 0.9316 24 1 -0.3633 0.5899 -0.8415 25 1 1.0462 1.3718 -3.4728 26 1 1.4497 -1.4980 1.4099 27 1 4.2656 -0.1208 2.4557 28 1 3.7852 1.6314 2.4552 29 1 2.6526 1.4149 4.6178 30 1 3.8018 0.0293 4.8589 31 1 3.2753 -2.1587 2.9931 32 1 0.3583 -2.7069 4.0063 33 1 1.5152 -3.9589 3.3019 34 1 3.1727 -3.4728 5.1603 35 1 2.0159 -2.2208 5.8646 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308269743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:36 Heat of formation + Delta-G solvation = 19.089384 kcal Electronic energy + Delta-G solvation = -14091.211992 eV Core-core repulsion = 11896.464234 eV Total energy + Delta-G solvation = -2194.747758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.63353 -37.24383 -36.17419 -33.79943 -29.75849 -27.21704 -26.76586 -24.74041 -23.05173 -22.65220 -22.05101 -19.35454 -18.32662 -17.05669 -16.68082 -16.48038 -15.29554 -15.08372 -14.74416 -14.34863 -14.13637 -13.61121 -13.14914 -12.91579 -12.78744 -12.71618 -12.49585 -12.27675 -12.23702 -12.04919 -11.67524 -11.41203 -11.34262 -11.00485 -10.70655 -10.54133 -10.42855 -8.88771 -8.10622 -6.19080 1.42253 1.42705 1.53209 2.44477 2.95864 3.19434 3.57112 3.76967 3.89917 3.97908 4.17126 4.24303 4.40754 4.45071 4.63622 4.72186 4.73231 4.83726 4.86591 4.98733 5.05966 5.06753 5.11943 5.20062 5.35616 5.39091 5.41278 5.57274 5.61973 5.66765 5.81235 6.28068 6.73976 6.92833 6.99945 7.50263 8.97450 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040384 B = 0.007866 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.185359 B = 3558.749402 C = 3781.226082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.512 4.512 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.927 5.927 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.668 5.668 13 C 0.054 3.946 14 H 0.046 0.954 15 C -0.128 4.128 16 C -0.117 4.117 17 C -0.073 4.073 18 H 0.074 0.926 19 C -0.135 4.135 20 C -0.185 4.185 21 C -0.162 4.162 22 H 0.035 0.965 23 H 0.027 0.973 24 H 0.043 0.957 25 H 0.260 0.740 26 H 0.332 0.668 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -4.499 13.860 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.298 5.298 13 C -0.057 4.057 14 H 0.064 0.936 15 C -0.167 4.167 16 C -0.155 4.155 17 C -0.092 4.092 18 H 0.093 0.907 19 C -0.153 4.153 20 C -0.222 4.222 21 C -0.199 4.199 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.816 -4.295 13.555 14.335 hybrid contribution -0.901 0.069 -1.141 1.456 sum 0.916 -4.226 12.414 13.145 Atomic orbital electron populations 1.22190 1.00335 0.99464 0.98760 1.18963 0.89582 0.92790 0.88139 0.98226 1.21438 1.34253 1.08146 0.91261 0.92783 1.25741 0.95640 0.95688 1.01992 1.70071 1.44873 1.17613 1.24179 0.85560 0.78747 0.78403 0.78848 1.19923 1.21082 1.19511 1.60784 1.57081 1.09012 1.02878 1.23098 0.97306 0.95157 0.90138 0.93591 1.22988 0.96874 1.00272 0.96566 1.22710 0.98261 0.99047 0.95458 1.22105 0.98791 0.93099 0.95156 0.90721 1.21765 1.01746 0.90794 1.00996 1.23013 0.95723 1.00060 1.03386 1.22977 1.02026 1.02682 0.92237 0.94578 0.95395 0.93763 0.93094 0.84993 0.90659 0.93238 0.89322 0.89812 0.88693 0.88950 0.88784 0.88025 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.24 8.94 71.98 0.64 -6.59 16 2 C 0.21 11.17 2.30 44.17 0.10 11.27 16 3 H 0.00 -0.02 7.82 -2.39 -0.02 -0.03 16 4 C -0.51 -29.24 8.77 25.60 0.22 -29.01 16 5 H 0.05 3.09 7.82 -2.91 -0.02 3.07 16 6 C 0.01 0.41 5.29 84.65 0.45 0.86 16 7 N -0.93 -55.28 11.98 21.45 0.26 -55.03 16 8 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.67 -28.74 5.72 -470.60 -2.69 -31.43 16 13 C 0.05 1.94 3.69 45.45 0.17 2.11 16 14 H 0.05 1.80 7.49 -2.39 -0.02 1.79 16 15 C -0.13 -4.20 7.59 31.12 0.24 -3.96 16 16 C -0.12 -2.90 7.67 31.12 0.24 -2.66 16 17 C -0.07 -2.00 3.88 -10.27 -0.04 -2.04 16 18 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 19 C -0.13 -3.53 3.84 -10.79 -0.04 -3.57 16 20 C -0.18 -4.31 10.24 30.62 0.31 -4.00 16 21 C -0.16 -3.28 10.26 30.62 0.31 -2.96 16 22 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.03 1.20 7.68 -2.39 -0.02 1.18 16 24 H 0.04 2.38 6.84 -2.39 -0.02 2.37 16 25 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.33 13.55 7.46 -89.70 -0.67 12.88 16 27 H 0.07 2.60 7.92 -2.39 -0.02 2.58 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.09 2.90 7.75 -2.39 -0.02 2.88 16 32 H 0.09 2.09 8.14 -2.38 -0.02 2.08 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -61.00 283.35 2.57 -58.43 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.37 Total: 21.59 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 2.61 Total: -40.56 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.44 Total: -86.46 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.00 2.57 -58.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308269743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.519 kcal (2) G-P(sol) polarization free energy of solvation -61.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds