Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.47078 * 2 1 4 4 C 1.50701 * 109.47436 * 240.00226 * 2 1 3 5 5 H 1.07994 * 119.99960 * 245.63452 * 4 2 1 6 6 C 1.37879 * 119.99762 * 65.62765 * 4 2 1 7 7 N 1.31521 * 119.99413 * 197.11234 * 6 4 2 8 8 Si 1.86793 * 120.00342 * 17.39095 * 6 4 2 9 9 H 1.48494 * 109.47423 * 179.72245 * 8 6 4 10 10 H 1.48506 * 109.47186 * 299.72366 * 8 6 4 11 11 H 1.48497 * 109.47445 * 59.71851 * 8 6 4 12 12 N 1.46900 * 109.47438 * 119.99729 * 2 1 3 13 13 C 1.46895 * 111.00190 * 275.00305 * 12 2 1 14 14 H 1.09007 * 112.85267 * 334.66335 * 13 12 2 15 15 C 1.53781 * 113.61650 * 105.86297 * 13 12 2 16 16 C 1.53782 * 87.08230 * 139.98423 * 15 13 12 17 17 C 1.53781 * 113.61673 * 203.47240 * 13 12 2 18 18 H 1.08998 * 113.61344 * 334.56411 * 17 13 12 19 19 C 1.52995 * 113.61769 * 105.46808 * 17 13 12 20 20 C 1.53002 * 117.49933 * 248.62366 * 19 17 13 21 21 C 1.53002 * 60.00026 * 252.50728 * 20 19 17 22 22 H 1.09004 * 109.46441 * 186.39041 * 1 2 3 23 23 H 1.08996 * 109.47184 * 306.38547 * 1 2 3 24 24 H 1.08993 * 109.47387 * 66.39001 * 1 2 3 25 25 H 0.96990 * 120.00172 * 355.24371 * 7 6 4 26 26 H 1.00904 * 110.99518 * 151.04909 * 12 2 1 27 27 H 1.09005 * 113.61407 * 254.52935 * 15 13 12 28 28 H 1.08999 * 113.61184 * 25.34426 * 15 13 12 29 29 H 1.08993 * 113.61839 * 89.11863 * 16 15 13 30 30 H 1.09003 * 113.60766 * 220.02169 * 16 15 13 31 31 H 1.09002 * 115.55262 * 34.33260 * 19 17 13 32 32 H 1.08997 * 117.49594 * 359.97438 * 20 19 17 33 33 H 1.09000 * 117.49803 * 145.02218 * 20 19 17 34 34 H 1.08992 * 117.50066 * 252.50948 * 21 20 19 35 35 H 1.09000 * 117.49554 * 107.48724 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5762 -1.6384 -1.1340 6 6 1.7976 -0.1754 -2.4794 7 7 1.9239 -0.9274 -3.5510 8 14 1.3078 1.6191 -2.6499 9 1 1.1213 1.9470 -4.0862 10 1 0.0373 1.8571 -1.9188 11 1 2.3753 2.4799 -2.0803 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 1 2.1950 1.2657 2.0508 15 6 0.9670 -0.0076 3.3802 16 6 2.0289 0.2392 4.4648 17 6 3.0762 -0.2196 3.4339 18 1 3.2598 -1.2940 3.4466 19 6 4.3647 0.6050 3.4587 20 6 5.6583 -0.0927 3.0338 21 6 5.4171 0.2400 4.5076 22 1 -0.3632 -1.0214 0.1144 23 1 -0.3633 0.6096 0.8273 24 1 -0.3634 0.4116 -0.9416 25 1 2.2485 -1.8377 -3.4693 26 1 2.9174 -1.1204 1.0286 27 1 0.1847 0.7510 3.3545 28 1 0.5719 -1.0234 3.3771 29 1 2.1276 1.2869 4.7489 30 1 1.9390 -0.4265 5.3232 31 1 4.2534 1.6588 3.2030 32 1 5.5915 -1.1394 2.7370 33 1 6.3984 0.5019 2.4982 34 1 5.9984 1.0534 4.9415 35 1 5.1915 -0.5877 5.1799 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308269744.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = 33.435384 kcal Electronic energy + Delta-G solvation = -14038.836539 eV Core-core repulsion = 11844.710870 eV Total energy + Delta-G solvation = -2194.125669 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29598 -36.21661 -34.61687 -31.92596 -28.64444 -25.94302 -24.79618 -23.33645 -22.17108 -20.73314 -19.55803 -19.18058 -17.45431 -15.71059 -15.33870 -14.59412 -14.29467 -13.43940 -13.25871 -12.99945 -12.61034 -12.01167 -11.87686 -11.65420 -11.47531 -11.40190 -10.97821 -10.67512 -10.63665 -10.36347 -10.32503 -9.89901 -9.73715 -9.60482 -9.39167 -8.85479 -8.19502 -7.46287 -6.43613 -4.04670 3.39907 3.42446 3.61115 3.85141 4.49605 4.68169 4.87525 4.88946 5.13768 5.19418 5.27554 5.35201 5.37821 5.53930 5.58812 5.68069 5.95526 5.98206 6.01874 6.11557 6.19136 6.26781 6.36083 6.50065 6.63377 6.71780 6.80543 6.90082 7.02535 7.53474 7.82749 8.20889 8.42248 8.56789 8.98552 9.63992 10.95986 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.008627 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.025194 B = 3244.802281 C = 3588.958566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.188 3.812 3 H -0.008 1.008 4 C -0.604 4.604 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.907 5.907 8 Si 1.047 2.953 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.668 5.668 13 C 0.071 3.929 14 H 0.062 0.938 15 C -0.128 4.128 16 C -0.133 4.133 17 C -0.084 4.084 18 H 0.092 0.908 19 C -0.140 4.140 20 C -0.179 4.179 21 C -0.182 4.182 22 H 0.048 0.952 23 H 0.018 0.982 24 H 0.049 0.951 25 H 0.267 0.733 26 H 0.337 0.663 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 3.917 14.813 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.079 3.921 3 H 0.009 0.991 4 C -0.642 4.642 5 H 0.077 0.923 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.876 3.124 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.299 5.299 13 C -0.040 4.040 14 H 0.079 0.921 15 C -0.167 4.167 16 C -0.171 4.171 17 C -0.103 4.103 18 H 0.110 0.890 19 C -0.158 4.158 20 C -0.216 4.216 21 C -0.219 4.219 22 H 0.067 0.933 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.156 0.844 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.808 4.806 13.841 14.763 hybrid contribution 1.300 -0.645 0.840 1.677 sum 3.108 4.162 14.680 15.572 Atomic orbital electron populations 1.22102 0.98425 1.00172 0.98625 1.19462 0.92092 0.92167 0.88395 0.99056 1.22122 1.40550 1.10130 0.91395 0.92287 1.25710 0.94665 1.04957 0.92101 1.70853 1.41888 1.09932 1.31444 0.84011 0.77110 0.75395 0.75927 1.21148 1.19994 1.21261 1.60707 1.32126 1.31836 1.05240 1.23084 0.94642 0.95549 0.90709 0.92050 1.23004 0.96423 1.02013 0.95237 1.22787 0.96837 1.00877 0.96580 1.22481 0.91479 0.99064 0.97230 0.88986 1.22313 0.90256 0.99589 1.03631 1.22948 0.99806 1.01725 0.97126 1.22871 1.03402 1.03354 0.92240 0.93296 0.96325 0.93200 0.92267 0.84395 0.92345 0.89701 0.90630 0.91869 0.88194 0.88721 0.89087 0.89315 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.07 37.16 0.34 -2.81 16 2 C 0.19 4.59 2.18 -68.87 -0.15 4.44 16 3 H -0.01 -0.20 6.13 -51.92 -0.32 -0.52 16 4 C -0.60 -17.19 8.83 -34.44 -0.30 -17.50 16 5 H 0.06 1.80 7.92 -52.49 -0.42 1.39 16 6 C 0.03 0.90 5.29 -17.82 -0.09 0.81 16 7 N -0.91 -28.14 13.70 55.43 0.76 -27.38 16 8 Si 1.05 25.67 26.28 -169.99 -4.47 21.20 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.27 -6.25 5.76 56.52 0.33 -5.93 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.67 -14.12 6.35 -100.10 -0.64 -14.75 16 13 C 0.07 1.24 3.56 -66.90 -0.24 1.00 16 14 H 0.06 1.13 7.45 -51.93 -0.39 0.74 16 15 C -0.13 -1.95 7.88 -25.92 -0.20 -2.16 16 16 C -0.13 -1.70 7.65 -25.82 -0.20 -1.90 16 17 C -0.08 -1.20 3.40 -89.72 -0.31 -1.50 16 18 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 19 C -0.14 -1.85 5.42 -90.62 -0.49 -2.35 16 20 C -0.18 -2.28 10.24 -26.73 -0.27 -2.55 16 21 C -0.18 -2.04 10.25 -26.73 -0.27 -2.32 16 22 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 1.19 4.87 -51.93 -0.25 0.94 16 25 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 26 H 0.34 7.23 8.09 -39.29 -0.32 6.91 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -29.52 280.91 -8.30 -37.82 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.99 Total: 5.71 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -2.20 Total: -26.83 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.12 Total: -42.14 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -4.47 Total: 21.20 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.52 -8.30 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308269744.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.253 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds