Wall clock time and date at job start Mon Mar 30 2020 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.47078 * 2 1 4 4 C 1.50701 * 109.47436 * 240.00226 * 2 1 3 5 5 H 1.07994 * 119.99960 * 245.63452 * 4 2 1 6 6 C 1.37879 * 119.99762 * 65.62765 * 4 2 1 7 7 N 1.31521 * 119.99413 * 197.11234 * 6 4 2 8 8 Si 1.86793 * 120.00342 * 17.39095 * 6 4 2 9 9 H 1.48494 * 109.47423 * 179.72245 * 8 6 4 10 10 H 1.48506 * 109.47186 * 299.72366 * 8 6 4 11 11 H 1.48497 * 109.47445 * 59.71851 * 8 6 4 12 12 N 1.46900 * 109.47438 * 119.99729 * 2 1 3 13 13 C 1.46895 * 111.00190 * 275.00305 * 12 2 1 14 14 H 1.09007 * 112.85267 * 334.66335 * 13 12 2 15 15 C 1.53781 * 113.61650 * 105.86297 * 13 12 2 16 16 C 1.53782 * 87.08230 * 139.98423 * 15 13 12 17 17 C 1.53781 * 113.61673 * 203.47240 * 13 12 2 18 18 H 1.08998 * 113.61344 * 334.56411 * 17 13 12 19 19 C 1.52995 * 113.61769 * 105.46808 * 17 13 12 20 20 C 1.53002 * 117.49933 * 248.62366 * 19 17 13 21 21 C 1.53002 * 60.00026 * 252.50728 * 20 19 17 22 22 H 1.09004 * 109.46441 * 186.39041 * 1 2 3 23 23 H 1.08996 * 109.47184 * 306.38547 * 1 2 3 24 24 H 1.08993 * 109.47387 * 66.39001 * 1 2 3 25 25 H 0.96990 * 120.00172 * 355.24371 * 7 6 4 26 26 H 1.00904 * 110.99518 * 151.04909 * 12 2 1 27 27 H 1.09005 * 113.61407 * 254.52935 * 15 13 12 28 28 H 1.08999 * 113.61184 * 25.34426 * 15 13 12 29 29 H 1.08993 * 113.61839 * 89.11863 * 16 15 13 30 30 H 1.09003 * 113.60766 * 220.02169 * 16 15 13 31 31 H 1.09002 * 115.55262 * 34.33260 * 19 17 13 32 32 H 1.08997 * 117.49594 * 359.97438 * 20 19 17 33 33 H 1.09000 * 117.49803 * 145.02218 * 20 19 17 34 34 H 1.08992 * 117.50066 * 252.50948 * 21 20 19 35 35 H 1.09000 * 117.49554 * 107.48724 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5762 -1.6384 -1.1340 6 6 1.7976 -0.1754 -2.4794 7 7 1.9239 -0.9274 -3.5510 8 14 1.3078 1.6191 -2.6499 9 1 1.1213 1.9470 -4.0862 10 1 0.0373 1.8571 -1.9188 11 1 2.3753 2.4799 -2.0803 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 1 2.1950 1.2657 2.0508 15 6 0.9670 -0.0076 3.3802 16 6 2.0289 0.2392 4.4648 17 6 3.0762 -0.2196 3.4339 18 1 3.2598 -1.2940 3.4466 19 6 4.3647 0.6050 3.4587 20 6 5.6583 -0.0927 3.0338 21 6 5.4171 0.2400 4.5076 22 1 -0.3632 -1.0214 0.1144 23 1 -0.3633 0.6096 0.8273 24 1 -0.3634 0.4116 -0.9416 25 1 2.2485 -1.8377 -3.4693 26 1 2.9174 -1.1204 1.0286 27 1 0.1847 0.7510 3.3545 28 1 0.5719 -1.0234 3.3771 29 1 2.1276 1.2869 4.7489 30 1 1.9390 -0.4265 5.3232 31 1 4.2534 1.6588 3.2030 32 1 5.5915 -1.1394 2.7370 33 1 6.3984 0.5019 2.4982 34 1 5.9984 1.0534 4.9415 35 1 5.1915 -0.5877 5.1799 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308269744.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:38 Heat of formation + Delta-G solvation = 14.908613 kcal Electronic energy + Delta-G solvation = -14039.639920 eV Core-core repulsion = 11844.710870 eV Total energy + Delta-G solvation = -2194.929050 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.50738 -37.50901 -36.27133 -34.01452 -30.41549 -27.15651 -26.74272 -24.76189 -23.12559 -22.02404 -21.24572 -20.53815 -19.50961 -16.91360 -16.73390 -16.40627 -15.44499 -15.23995 -14.77153 -14.49876 -14.10731 -13.77932 -13.49940 -13.10090 -12.77566 -12.70966 -12.40048 -12.35768 -12.04421 -11.84234 -11.66793 -11.54062 -11.34740 -11.00360 -10.73832 -10.63658 -10.37875 -9.16783 -8.74828 -6.38956 1.42903 1.49254 1.69328 2.45487 2.86325 3.03783 3.49631 3.69148 3.83642 3.89167 4.10848 4.15611 4.25931 4.33377 4.51822 4.59443 4.70463 4.78455 4.88647 4.92028 4.98835 5.02161 5.06145 5.08416 5.16616 5.24666 5.27403 5.45769 5.59323 5.62666 5.83517 6.00682 6.32248 6.72728 6.79967 7.39432 8.61443 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.008627 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.025194 B = 3244.802281 C = 3588.958566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.191 3.809 3 H -0.008 1.008 4 C -0.607 4.607 5 H 0.021 0.979 6 C -0.019 4.019 7 N -0.937 5.937 8 Si 1.085 2.915 9 H -0.287 1.287 10 H -0.243 1.243 11 H -0.268 1.268 12 N -0.673 5.673 13 C 0.055 3.945 14 H 0.055 0.945 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.076 4.076 18 H 0.085 0.915 19 C -0.154 4.154 20 C -0.195 4.195 21 C -0.156 4.156 22 H 0.037 0.963 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.252 0.748 26 H 0.330 0.670 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 5.697 17.205 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.081 3.919 3 H 0.010 0.990 4 C -0.646 4.646 5 H 0.040 0.960 6 C -0.218 4.218 7 N -0.573 5.573 8 Si 0.906 3.094 9 H -0.213 1.213 10 H -0.168 1.168 11 H -0.194 1.194 12 N -0.303 5.303 13 C -0.056 4.056 14 H 0.073 0.927 15 C -0.165 4.165 16 C -0.152 4.152 17 C -0.095 4.095 18 H 0.103 0.897 19 C -0.172 4.172 20 C -0.232 4.232 21 C -0.193 4.193 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.147 0.853 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.449 6.572 16.272 17.609 hybrid contribution 1.473 -1.291 0.125 1.963 sum 2.922 5.281 16.398 17.473 Atomic orbital electron populations 1.21982 0.97192 1.00114 0.99398 1.19329 0.92942 0.91630 0.87980 0.99039 1.22368 1.39681 1.08873 0.93632 0.96037 1.27161 0.94294 1.08476 0.91830 1.70983 1.44274 1.09535 1.32548 0.83561 0.78780 0.70680 0.76400 1.21266 1.16777 1.19384 1.60710 1.31773 1.32662 1.05108 1.23320 0.97767 0.94437 0.90031 0.92749 1.22978 0.96557 1.01760 0.95244 1.22722 0.94175 1.02158 0.96112 1.22381 0.91987 0.98815 0.96275 0.89691 1.22292 0.90042 0.99272 1.05635 1.22999 0.99895 1.01290 0.99045 1.22944 1.01351 1.03761 0.91218 0.94332 0.93379 0.93940 0.93941 0.85266 0.91655 0.90559 0.89149 0.89950 0.88351 0.89594 0.88919 0.87546 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 9.07 71.98 0.65 -5.13 16 2 C 0.19 9.22 2.18 44.17 0.10 9.32 16 3 H -0.01 -0.38 6.13 -2.38 -0.01 -0.39 16 4 C -0.61 -35.36 8.83 25.60 0.23 -35.14 16 5 H 0.02 1.37 7.92 -2.91 -0.02 1.35 16 6 C -0.02 -1.14 5.29 84.65 0.45 -0.69 16 7 N -0.94 -59.77 13.70 21.45 0.29 -59.48 16 8 Si 1.08 50.85 26.28 68.60 1.80 52.65 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.24 -10.20 5.76 99.48 0.57 -9.63 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.67 -28.27 6.35 -470.61 -2.99 -31.26 16 13 C 0.05 1.81 3.56 45.44 0.16 1.98 16 14 H 0.05 1.90 7.45 -2.38 -0.02 1.89 16 15 C -0.13 -3.54 7.88 31.12 0.25 -3.30 16 16 C -0.11 -2.52 7.65 31.18 0.24 -2.28 16 17 C -0.08 -2.01 3.40 -10.21 -0.03 -2.05 16 18 H 0.08 2.39 8.13 -2.39 -0.02 2.37 16 19 C -0.15 -3.78 5.42 -10.79 -0.06 -3.83 16 20 C -0.20 -4.73 10.24 30.60 0.31 -4.42 16 21 C -0.16 -3.04 10.25 30.60 0.31 -2.73 16 22 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.04 1.94 4.87 -2.39 -0.01 1.93 16 25 H 0.25 16.31 8.73 -92.72 -0.81 15.50 16 26 H 0.33 14.44 8.09 -89.69 -0.73 13.72 16 27 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -64.20 280.91 1.86 -62.34 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.15 Total: 24.02 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 2.60 Total: -48.27 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -2.70 Total: -90.74 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.80 Total: 52.65 kcal Total: -64.20 1.86 -62.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308269744.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.249 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds