Wall clock time and date at job start Mon Mar 30 2020 02:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47415 * 240.00149 * 2 1 3 5 5 H 1.08001 * 119.99938 * 240.00333 * 4 2 1 6 6 C 1.37882 * 120.00029 * 59.99747 * 4 2 1 7 7 N 1.31512 * 119.99879 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99788 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47160 * 59.99980 * 8 6 4 10 10 H 1.48500 * 109.46850 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47073 * 299.99761 * 8 6 4 12 12 N 1.46898 * 109.47117 * 119.99877 * 2 1 3 13 13 C 1.46899 * 111.00264 * 275.00312 * 12 2 1 14 14 H 1.09000 * 112.90516 * 336.25095 * 13 12 2 15 15 C 1.53776 * 113.61527 * 107.49981 * 13 12 2 16 16 C 1.53779 * 87.07945 * 89.12093 * 15 13 12 17 17 C 1.53778 * 87.08526 * 25.43155 * 16 15 13 18 18 H 1.08997 * 113.68775 * 89.12571 * 17 16 15 19 19 C 1.52998 * 113.61596 * 220.02429 * 17 16 15 20 20 C 1.53000 * 117.49463 * 208.87543 * 19 17 16 21 21 C 1.52997 * 60.00347 * 107.48750 * 20 19 17 22 22 H 1.08998 * 109.47299 * 60.00490 * 1 2 3 23 23 H 1.09009 * 109.46868 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47573 * 299.99963 * 1 2 3 25 25 H 0.96999 * 119.99685 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99936 * 38.95869 * 12 2 1 27 27 H 1.09000 * 113.61227 * 203.66255 * 15 13 12 28 28 H 1.08997 * 113.61953 * 334.57217 * 15 13 12 29 29 H 1.09007 * 113.61427 * 270.88321 * 16 15 13 30 30 H 1.09000 * 113.62052 * 139.98215 * 16 15 13 31 31 H 1.08990 * 115.56470 * 63.18594 * 19 17 16 32 32 H 1.09002 * 117.49696 * 214.97963 * 20 19 17 33 33 H 1.09002 * 117.50343 * 359.97438 * 20 19 17 34 34 H 1.08999 * 117.49685 * 252.51237 * 21 20 19 35 35 H 1.08997 * 117.50044 * 107.48590 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8271 -0.4198 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 2.0823 0.2226 2.3469 14 1 2.1672 1.2683 2.0515 15 6 0.9909 -0.0336 3.3995 16 6 1.9707 -1.0164 4.0618 17 6 3.1030 -0.2000 3.4168 18 1 3.4546 0.6258 4.0352 19 6 4.2438 -1.0602 2.8695 20 6 5.6427 -0.4412 2.8379 21 6 5.3113 -1.5308 3.8596 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7087 1.1612 -3.4844 26 1 1.4496 -1.4979 1.4100 27 1 0.7641 0.8376 4.0141 28 1 0.0986 -0.5120 2.9958 29 1 1.8936 -2.0343 3.6793 30 1 1.9654 -0.9711 5.1509 31 1 3.9750 -1.7379 2.0594 32 1 6.2941 -0.7118 2.0069 33 1 5.7502 0.5789 3.2066 34 1 5.2007 -1.2276 4.9007 35 1 5.7446 -2.5183 3.7007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308269746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:41 Heat of formation + Delta-G solvation = 38.011962 kcal Electronic energy + Delta-G solvation = -14118.945697 eV Core-core repulsion = 11925.018483 eV Total energy + Delta-G solvation = -2193.927214 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.28664 -36.00853 -34.39747 -31.66048 -27.67637 -25.78665 -25.05448 -23.82051 -21.90177 -20.58803 -20.24546 -18.37596 -16.48277 -15.30310 -15.22026 -14.47342 -14.17185 -13.29404 -13.07562 -12.84249 -12.50752 -12.01148 -11.67407 -11.49549 -11.21942 -10.95200 -10.83915 -10.75390 -10.43981 -10.26224 -10.09376 -10.06610 -9.79470 -9.50758 -9.21172 -8.83295 -8.32215 -7.17651 -5.95105 -3.98086 3.36266 3.40094 3.43492 4.19893 4.46302 4.96343 5.04948 5.07988 5.27425 5.35810 5.36514 5.53562 5.61499 5.79645 5.91413 5.93972 6.05341 6.15784 6.24627 6.30576 6.41664 6.44669 6.63360 6.68357 6.76727 6.90502 7.02216 7.15767 7.44321 7.78597 7.93220 8.33208 8.59453 8.67611 9.08854 9.66975 11.11901 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033404 B = 0.008856 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.020059 B = 3160.774225 C = 3762.749324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.658 5.658 13 C 0.084 3.916 14 H 0.072 0.928 15 C -0.175 4.175 16 C -0.128 4.128 17 C -0.078 4.078 18 H 0.078 0.922 19 C -0.110 4.110 20 C -0.182 4.182 21 C -0.196 4.196 22 H 0.087 0.913 23 H 0.026 0.974 24 H 0.006 0.994 25 H 0.259 0.741 26 H 0.327 0.673 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -2.205 11.157 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.106 3.894 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.286 5.286 13 C -0.028 4.028 14 H 0.090 0.910 15 C -0.215 4.215 16 C -0.165 4.165 17 C -0.098 4.098 18 H 0.096 0.904 19 C -0.128 4.128 20 C -0.219 4.219 21 C -0.233 4.233 22 H 0.105 0.895 23 H 0.045 0.955 24 H 0.025 0.975 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.614 -2.008 10.814 11.577 hybrid contribution -0.672 -0.247 -0.611 0.941 sum 2.942 -2.254 10.203 10.855 Atomic orbital electron populations 1.22463 1.00764 0.99047 1.00517 1.19231 0.89531 0.94305 0.86358 0.94870 1.21125 1.30115 1.12374 0.89674 0.92079 1.24943 0.95385 0.95224 0.98993 1.69875 1.37329 1.23233 1.23362 0.86588 0.79172 0.79590 0.82164 1.20432 1.21507 1.20332 1.60546 1.57111 1.08291 1.02699 1.22583 0.93086 0.96940 0.90226 0.90966 1.23656 0.98194 0.99492 1.00144 1.22809 0.96370 0.98705 0.98622 1.22290 0.93221 0.96993 0.97274 0.90409 1.22163 0.88489 1.01753 1.00425 1.22844 1.00376 0.97365 1.01360 1.22897 1.05889 0.98774 0.95731 0.89450 0.95520 0.97452 0.93076 0.85566 0.90912 0.91651 0.90159 0.92620 0.85919 0.89295 0.89674 0.89813 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.94 37.15 0.33 -3.71 16 2 C 0.21 5.32 2.56 -68.87 -0.18 5.14 16 3 H 0.03 0.92 7.47 -51.93 -0.39 0.53 16 4 C -0.49 -13.64 8.84 -34.44 -0.30 -13.94 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.28 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.84 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.66 -13.62 4.87 -100.11 -0.49 -14.11 16 13 C 0.08 1.49 3.96 -66.90 -0.26 1.23 16 14 H 0.07 1.39 7.48 -51.93 -0.39 1.01 16 15 C -0.18 -2.66 7.60 -25.92 -0.20 -2.85 16 16 C -0.13 -1.77 7.40 -25.92 -0.19 -1.96 16 17 C -0.08 -1.19 3.79 -89.81 -0.34 -1.53 16 18 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 19 C -0.11 -1.72 5.14 -90.62 -0.47 -2.19 16 20 C -0.18 -2.65 10.24 -26.73 -0.27 -2.93 16 21 C -0.20 -2.59 10.25 -26.73 -0.27 -2.87 16 22 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 23 H 0.03 0.61 8.13 -51.92 -0.42 0.19 16 24 H 0.01 0.14 8.02 -51.93 -0.42 -0.27 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.33 6.51 7.85 -39.29 -0.31 6.20 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.03 8.02 -51.93 -0.42 0.62 16 29 H 0.08 1.14 8.04 -51.92 -0.42 0.72 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.12 2.20 7.19 -51.93 -0.37 1.82 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 282.44 15.07 4.26 4.26 Total: -1.00 -27.52 282.44 -8.82 -36.34 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.95 Total: 6.29 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -2.25 Total: -24.19 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.14 Total: -39.32 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.52 -8.82 -36.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308269746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.356 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds