Wall clock time and date at job start Mon Mar 30 2020 02:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.46580 * 2 1 4 4 C 1.46895 * 111.00158 * 297.86209 * 3 2 1 5 5 C 1.50702 * 109.47077 * 292.79892 * 4 3 2 6 6 H 1.07998 * 119.99821 * 354.96076 * 5 4 3 7 7 C 1.37877 * 119.99817 * 174.96286 * 5 4 3 8 8 N 1.31510 * 120.00296 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99901 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46876 * 59.99979 * 9 7 5 11 11 H 1.48498 * 109.47208 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47159 * 300.00311 * 9 7 5 13 13 C 1.46896 * 111.00210 * 61.81817 * 3 2 1 14 14 C 1.50705 * 109.46999 * 66.04054 * 13 3 2 15 15 C 1.31006 * 119.99632 * 125.00686 * 14 13 3 16 16 C 1.51399 * 136.31579 * 359.62089 * 15 14 13 17 17 C 1.53678 * 87.41067 * 206.26924 * 16 15 14 18 18 C 1.51402 * 136.31504 * 180.02562 * 15 14 13 19 19 H 1.09010 * 109.47278 * 179.50224 * 1 2 3 20 20 H 1.09008 * 109.47423 * 299.49805 * 1 2 3 21 21 H 1.08996 * 109.47810 * 59.50112 * 1 2 3 22 22 H 1.08993 * 109.46999 * 240.00273 * 2 1 3 23 23 H 1.08996 * 109.47414 * 119.99767 * 2 1 3 24 24 H 1.09003 * 109.47247 * 52.79812 * 4 3 2 25 25 H 1.09004 * 109.47267 * 172.80102 * 4 3 2 26 26 H 0.97004 * 120.00314 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.46996 * 306.04329 * 13 3 2 28 28 H 1.09001 * 109.47340 * 186.04110 * 13 3 2 29 29 H 1.07996 * 120.00161 * 305.00089 * 14 13 3 30 30 H 1.09006 * 113.56478 * 320.90029 * 16 15 14 31 31 H 1.08997 * 113.56154 * 91.64079 * 16 15 14 32 32 H 1.08994 * 113.82721 * 220.14988 * 17 16 15 33 33 H 1.09001 * 113.82477 * 88.57297 * 17 16 15 34 34 H 1.08999 * 113.56170 * 268.36623 * 18 15 14 35 35 H 1.08998 * 113.56139 * 39.09629 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.5907 2.0950 -1.2124 5 6 2.2776 1.4980 -2.4136 6 1 3.0244 0.7291 -2.2818 7 6 1.9527 1.9336 -3.6808 8 7 1.0437 2.8703 -3.8412 9 14 2.8046 1.1941 -5.1696 10 1 2.5433 -0.2671 -5.2144 11 1 2.2812 1.8292 -6.4057 12 1 4.2671 1.4326 -5.0723 13 6 1.5843 2.0973 1.2088 14 6 2.2430 1.4841 2.4177 15 6 2.9376 2.2347 3.2365 16 6 3.3160 3.6979 3.3259 17 6 4.5560 3.2569 4.1193 18 6 3.7261 2.0248 4.5118 19 1 -0.3634 -1.0277 -0.0089 20 1 -0.3634 0.5060 0.8945 21 1 -0.3634 0.5215 -0.8854 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.5109 1.9995 -1.3266 25 1 1.8555 3.1491 -1.1291 26 1 0.8153 3.1770 -4.7327 27 1 0.5014 2.0194 1.3064 28 1 1.8678 3.1471 1.1339 29 1 2.1424 0.4260 2.6090 30 1 3.5529 4.1465 2.3611 31 1 2.6149 4.2944 3.9095 32 1 4.7978 3.9103 4.9575 33 1 5.4190 3.0256 3.4949 34 1 3.1362 2.1671 5.4172 35 1 4.3000 1.0981 4.5217 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308385674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:23 Heat of formation + Delta-G solvation = 19.557746 kcal Electronic energy + Delta-G solvation = -13750.012528 eV Core-core repulsion = 11555.285080 eV Total energy + Delta-G solvation = -2194.727449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83147 -38.65700 -34.82809 -32.66975 -30.96046 -28.59970 -26.70094 -25.60208 -25.00756 -22.81353 -20.90481 -18.52607 -18.33667 -16.98140 -16.66045 -16.36184 -16.15673 -15.30399 -15.07330 -14.66774 -14.10239 -13.49012 -13.24375 -13.12869 -13.01428 -12.76222 -12.60502 -12.50297 -12.36484 -12.21181 -11.89467 -11.66054 -11.49548 -11.29817 -10.86222 -10.60333 -9.72673 -8.86345 -8.18604 -6.28785 1.31457 1.40440 1.43674 1.51633 2.41010 3.13173 3.39905 3.65483 3.80329 3.90178 4.26121 4.33185 4.34609 4.48303 4.55241 4.59443 4.73781 4.81103 4.83806 4.97798 5.01008 5.01448 5.06287 5.16707 5.22809 5.37322 5.48282 5.49590 5.63207 5.67932 6.08678 6.15248 6.39760 6.68617 6.88022 7.40643 8.91637 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.038554 B = 0.006934 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.074197 B = 4036.907470 C = 4341.777070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 N -0.542 5.542 4 C 0.203 3.797 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.087 3.913 14 C -0.129 4.129 15 C -0.170 4.170 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.092 4.092 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.031 0.969 22 H 0.058 0.942 23 H 0.083 0.917 24 H -0.019 1.019 25 H -0.008 1.008 26 H 0.264 0.736 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.122 0.878 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -2.631 14.745 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.068 4.068 3 N -0.266 5.266 4 C 0.077 3.923 5 C -0.559 4.559 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.195 1.195 13 C -0.040 4.040 14 C -0.147 4.147 15 C -0.171 4.171 16 C -0.152 4.152 17 C -0.167 4.167 18 C -0.129 4.129 19 H 0.093 0.907 20 H 0.077 0.923 21 H 0.050 0.950 22 H 0.077 0.923 23 H 0.101 0.899 24 H -0.001 1.001 25 H 0.010 0.990 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.390 -2.529 14.610 15.210 hybrid contribution -0.802 0.049 -1.275 1.507 sum 2.588 -2.481 13.335 13.808 Atomic orbital electron populations 1.22274 0.98452 1.02301 1.00773 1.22003 0.92923 0.90196 1.01646 1.62304 1.59669 1.02908 1.01701 1.19430 0.93182 0.92310 0.87396 1.21414 1.21817 1.21436 0.91250 0.92242 1.25895 0.95908 0.95574 1.02228 1.70080 1.33437 1.30550 1.23528 0.85463 0.78792 0.78782 0.77748 1.19148 1.20765 1.19503 1.20992 0.96787 0.97121 0.89114 1.21709 0.98813 0.99329 0.94819 1.22912 0.97488 0.97911 0.98814 1.22257 0.98472 0.93992 1.00462 1.22646 0.95880 0.97922 1.00253 1.22152 0.96693 0.99018 0.95059 0.90713 0.92326 0.94976 0.92343 0.89870 1.00099 0.99014 0.92736 0.94474 0.92770 0.86038 0.93094 0.88025 0.88842 0.90640 0.87544 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.54 9.26 71.98 0.67 -5.88 16 2 C 0.06 2.37 5.71 86.30 0.49 2.87 16 3 N -0.54 -24.52 4.68 -905.36 -4.24 -28.76 16 4 C 0.20 11.19 4.53 85.56 0.39 11.57 16 5 C -0.52 -30.37 8.40 25.60 0.21 -30.15 16 6 H 0.06 3.42 7.39 -2.91 -0.02 3.40 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.94 -57.36 13.29 21.45 0.28 -57.08 16 9 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.09 3.35 5.19 85.56 0.44 3.79 16 14 C -0.13 -4.03 9.19 25.64 0.24 -3.80 16 15 C -0.17 -4.69 6.88 -16.05 -0.11 -4.80 16 16 C -0.11 -2.87 7.40 30.16 0.22 -2.65 16 17 C -0.13 -2.61 8.18 31.04 0.25 -2.35 16 18 C -0.09 -1.87 7.95 30.15 0.24 -1.63 16 19 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 20 H 0.06 1.96 6.34 -2.38 -0.02 1.94 16 21 H 0.03 1.39 6.28 -2.39 -0.01 1.38 16 22 H 0.06 2.53 6.99 -2.39 -0.02 2.51 16 23 H 0.08 2.75 6.57 -2.39 -0.02 2.74 16 24 H -0.02 -1.09 6.01 -2.39 -0.01 -1.11 16 25 H -0.01 -0.49 7.91 -2.39 -0.02 -0.51 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.04 1.40 6.07 -2.38 -0.01 1.39 16 28 H 0.05 2.19 7.05 -2.39 -0.02 2.18 16 29 H 0.12 3.47 6.91 -2.91 -0.02 3.45 16 30 H 0.05 1.49 7.95 -2.38 -0.02 1.47 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.78 279.60 2.63 -62.15 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.05 Total: 8.98 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.51 Total: -32.46 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -3.96 Total: -85.84 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.78 2.63 -62.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308385674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.709 kcal (2) G-P(sol) polarization free energy of solvation -64.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds