Wall clock time and date at job start Mon Mar 30 2020 02:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47197 * 239.99875 * 2 1 3 5 5 C 1.50694 * 109.47168 * 175.00067 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46900 * 109.47354 * 120.00022 * 2 1 3 14 14 C 1.46903 * 111.00037 * 275.00123 * 13 2 1 15 15 H 1.09005 * 109.35336 * 34.71768 * 14 13 2 16 16 C 1.50069 * 109.35618 * 274.99934 * 14 13 2 17 17 C 1.29448 * 124.07103 * 222.68436 * 16 14 13 18 18 C 1.50061 * 124.07867 * 0.44387 * 17 16 14 19 19 C 1.53029 * 110.14482 * 342.87164 * 18 17 16 20 20 C 1.53024 * 109.35780 * 154.30720 * 14 13 2 21 21 H 1.09005 * 109.47168 * 300.00070 * 1 2 3 22 22 H 1.08999 * 109.47050 * 59.99651 * 1 2 3 23 23 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46922 * 54.99769 * 4 2 1 25 25 H 1.09003 * 109.46836 * 295.00525 * 4 2 1 26 26 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99573 * 38.94911 * 13 2 1 28 28 H 1.07999 * 117.96265 * 42.66125 * 16 14 13 29 29 H 1.07996 * 117.95602 * 180.46927 * 17 16 14 30 30 H 1.08999 * 109.36058 * 103.07429 * 18 17 16 31 31 H 1.08999 * 109.35781 * 222.66535 * 18 17 16 32 32 H 1.09009 * 109.63799 * 169.12121 * 19 18 17 33 33 H 1.09001 * 109.64029 * 289.74853 * 19 18 17 34 34 H 1.08999 * 109.64203 * 289.32453 * 20 14 13 35 35 H 1.08992 * 109.64121 * 49.96212 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5763 -1.8370 -3.3000 9 14 6.0919 -1.0603 -2.4374 10 1 6.5870 -1.7605 -3.6498 11 1 6.4843 0.3706 -2.4966 12 1 6.6845 -1.6864 -1.2282 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2598 0.9351 2.2862 16 6 3.3864 0.9649 2.3203 17 6 4.1179 1.1836 3.3657 18 6 3.7689 0.7171 4.7486 19 6 2.2860 0.3465 4.8213 20 6 1.9595 -0.5807 3.6436 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6053 -0.2618 -2.1370 25 1 1.7515 -1.7715 -1.2055 26 1 4.0606 -2.2432 -4.0358 27 1 1.4495 -1.4979 1.4100 28 1 3.7365 1.3397 1.3699 29 1 5.0363 1.7365 3.2344 30 1 4.3721 -0.1558 4.9985 31 1 3.9775 1.5142 5.4622 32 1 2.0826 -0.1686 5.7603 33 1 1.6790 1.2495 4.7563 34 1 0.9421 -0.9583 3.7455 35 1 2.6628 -1.4132 3.6269 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379399181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:14 Heat of formation + Delta-G solvation = -5.512348 kcal Electronic energy + Delta-G solvation = -14027.737506 eV Core-core repulsion = 11831.922937 eV Total energy + Delta-G solvation = -2195.814569 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.66174 -35.80873 -32.62589 -30.91529 -30.69282 -27.35761 -27.00410 -23.11458 -22.20178 -21.92670 -19.44701 -17.52431 -16.30572 -15.81391 -14.97098 -14.52184 -14.16220 -13.70888 -13.12501 -12.79554 -12.50264 -12.26492 -12.16088 -12.01678 -11.71168 -11.47331 -11.14854 -10.80004 -10.60482 -10.53038 -10.20881 -10.02183 -9.83879 -9.18753 -8.93728 -8.67827 -8.20144 -7.50468 -5.82897 -3.79933 2.70666 3.43981 3.47438 3.51472 4.60951 4.79019 4.91552 4.98040 5.26473 5.51756 5.53963 5.62262 5.67809 5.73560 5.79508 5.85945 5.93424 5.97470 6.04576 6.09620 6.11831 6.39039 6.49614 6.56981 6.67271 7.06325 7.10380 7.31493 7.63445 7.75664 8.08786 8.12719 8.24735 8.66232 9.25133 9.80898 11.29354 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.009217 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.385044 B = 3037.191767 C = 3748.031040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.064 0.936 4 C 0.034 3.966 5 C -0.486 4.486 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.291 1.291 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.658 5.658 14 C 0.115 3.885 15 H 0.043 0.957 16 C -0.111 4.111 17 C -0.182 4.182 18 C -0.085 4.085 19 C -0.116 4.116 20 C -0.122 4.122 21 H 0.036 0.964 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.257 0.743 27 H 0.333 0.667 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 4.437 13.849 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.022 4.022 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.217 1.217 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.288 5.288 14 C 0.005 3.995 15 H 0.061 0.939 16 C -0.130 4.130 17 C -0.201 4.201 18 C -0.122 4.122 19 C -0.154 4.154 20 C -0.160 4.160 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.151 0.849 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.983 4.417 13.505 14.519 hybrid contribution 0.191 0.114 -0.051 0.229 sum -2.792 4.531 13.455 14.469 Atomic orbital electron populations 1.22562 0.99637 1.01156 1.00543 1.21843 0.89760 0.98200 0.92364 0.91807 1.19103 0.96213 0.95357 0.89705 1.21123 0.91911 1.32771 1.06629 0.92389 1.25004 0.97890 0.96001 0.96100 1.69957 1.35207 1.37112 1.12384 0.86716 0.86582 0.77911 0.77073 1.21661 1.20599 1.20395 1.60567 1.57805 1.08263 1.02151 1.20325 0.94643 0.93842 0.90678 0.93915 1.22159 0.95841 0.96720 0.98235 1.21868 1.00083 1.03609 0.94506 1.20377 0.96127 1.00479 0.95211 1.21568 0.96432 0.99445 0.97923 1.21785 1.01331 0.98794 0.94074 0.94478 0.92515 0.93033 0.96557 0.96555 0.93349 0.84906 0.87395 0.88417 0.91380 0.91889 0.92023 0.92095 0.92276 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.15 37.16 0.34 -2.73 16 2 C 0.09 1.80 2.33 -67.71 -0.16 1.64 16 3 H 0.06 1.35 7.44 -51.93 -0.39 0.96 16 4 C 0.03 0.87 4.65 -27.89 -0.13 0.74 16 5 C -0.49 -13.90 8.84 -34.44 -0.30 -14.21 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.88 13.29 55.43 0.74 -27.15 16 9 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 13 N -0.66 -12.50 5.75 -101.26 -0.58 -13.08 16 14 C 0.11 1.85 2.57 -69.16 -0.18 1.67 16 15 H 0.04 0.68 7.10 -51.93 -0.37 0.31 16 16 C -0.11 -1.88 9.07 -35.90 -0.33 -2.21 16 17 C -0.18 -2.68 9.80 -35.90 -0.35 -3.03 16 18 C -0.08 -1.02 6.11 -28.18 -0.17 -1.20 16 19 C -0.12 -1.33 6.01 -26.51 -0.16 -1.49 16 20 C -0.12 -1.63 5.26 -26.51 -0.14 -1.77 16 21 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 24 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.33 5.88 8.09 -39.29 -0.32 5.56 16 28 H 0.11 2.06 7.82 -52.49 -0.41 1.65 16 29 H 0.10 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.08 8.12 -51.93 -0.42 0.65 16 LS Contribution 282.51 15.07 4.26 4.26 Total: -1.00 -30.37 282.51 -8.34 -38.72 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.06 Total: 0.94 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.68 Total: -21.23 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.15 Total: -40.23 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.37 -8.34 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379399181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.203 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds