Wall clock time and date at job start Mon Mar 30 2020 02:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47197 * 239.99875 * 2 1 3 5 5 C 1.50694 * 109.47168 * 175.00067 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46900 * 109.47354 * 120.00022 * 2 1 3 14 14 C 1.46903 * 111.00037 * 275.00123 * 13 2 1 15 15 H 1.09005 * 109.35336 * 34.71768 * 14 13 2 16 16 C 1.50069 * 109.35618 * 274.99934 * 14 13 2 17 17 C 1.29448 * 124.07103 * 222.68436 * 16 14 13 18 18 C 1.50061 * 124.07867 * 0.44387 * 17 16 14 19 19 C 1.53029 * 110.14482 * 342.87164 * 18 17 16 20 20 C 1.53024 * 109.35780 * 154.30720 * 14 13 2 21 21 H 1.09005 * 109.47168 * 300.00070 * 1 2 3 22 22 H 1.08999 * 109.47050 * 59.99651 * 1 2 3 23 23 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46922 * 54.99769 * 4 2 1 25 25 H 1.09003 * 109.46836 * 295.00525 * 4 2 1 26 26 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 27 27 H 1.00905 * 110.99573 * 38.94911 * 13 2 1 28 28 H 1.07999 * 117.96265 * 42.66125 * 16 14 13 29 29 H 1.07996 * 117.95602 * 180.46927 * 17 16 14 30 30 H 1.08999 * 109.36058 * 103.07429 * 18 17 16 31 31 H 1.08999 * 109.35781 * 222.66535 * 18 17 16 32 32 H 1.09009 * 109.63799 * 169.12121 * 19 18 17 33 33 H 1.09001 * 109.64029 * 289.74853 * 19 18 17 34 34 H 1.08999 * 109.64203 * 289.32453 * 20 14 13 35 35 H 1.08992 * 109.64121 * 49.96212 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5763 -1.8370 -3.3000 9 14 6.0919 -1.0603 -2.4374 10 1 6.5870 -1.7605 -3.6498 11 1 6.4843 0.3706 -2.4966 12 1 6.6845 -1.6864 -1.2282 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2598 0.9351 2.2862 16 6 3.3864 0.9649 2.3203 17 6 4.1179 1.1836 3.3657 18 6 3.7689 0.7171 4.7486 19 6 2.2860 0.3465 4.8213 20 6 1.9595 -0.5807 3.6436 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6053 -0.2618 -2.1370 25 1 1.7515 -1.7715 -1.2055 26 1 4.0606 -2.2432 -4.0358 27 1 1.4495 -1.4979 1.4100 28 1 3.7365 1.3397 1.3699 29 1 5.0363 1.7365 3.2344 30 1 4.3721 -0.1558 4.9985 31 1 3.9775 1.5142 5.4622 32 1 2.0826 -0.1686 5.7603 33 1 1.6790 1.2495 4.7563 34 1 0.9421 -0.9583 3.7455 35 1 2.6628 -1.4132 3.6269 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379399181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:14 Heat of formation + Delta-G solvation = -24.133530 kcal Electronic energy + Delta-G solvation = -14028.544981 eV Core-core repulsion = 11831.922937 eV Total energy + Delta-G solvation = -2196.622045 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89443 -37.30853 -34.72202 -32.38851 -31.83329 -29.27677 -28.33146 -25.09308 -23.32786 -23.19163 -21.11026 -18.67455 -18.39045 -17.20566 -16.52861 -16.30061 -15.67314 -14.84580 -14.69159 -14.14641 -13.93487 -13.71301 -13.53085 -13.27980 -13.24242 -13.12586 -12.84759 -12.54218 -12.41619 -11.94425 -11.79227 -11.46599 -11.11767 -11.04132 -10.98310 -10.48385 -9.87772 -8.97952 -8.09970 -6.14198 1.38773 1.42039 1.47009 1.49481 2.46330 3.22137 3.48646 3.83170 3.96368 4.18528 4.27554 4.38660 4.48754 4.50228 4.57735 4.58249 4.71426 4.85216 4.93526 5.04498 5.08586 5.14949 5.21971 5.28611 5.36691 5.47187 5.53050 5.68931 5.85018 5.90544 6.11452 6.35613 6.53277 6.79455 6.99525 7.50831 9.02152 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.009217 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.385044 B = 3037.191767 C = 3748.031040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.053 0.947 4 C 0.038 3.962 5 C -0.497 4.497 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.285 1.285 11 H -0.271 1.271 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.119 3.881 15 H 0.047 0.953 16 C -0.147 4.147 17 C -0.163 4.163 18 C -0.087 4.087 19 C -0.111 4.111 20 C -0.117 4.117 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.055 0.945 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.259 0.741 27 H 0.339 0.661 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 4.862 16.228 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 H 0.071 0.929 4 C 0.001 3.999 5 C -0.535 4.535 6 H 0.072 0.928 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.781 3.219 10 H -0.210 1.210 11 H -0.196 1.196 12 H -0.199 1.199 13 N -0.308 5.308 14 C 0.010 3.990 15 H 0.065 0.935 16 C -0.166 4.166 17 C -0.182 4.182 18 C -0.124 4.124 19 C -0.149 4.149 20 C -0.155 4.155 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.067 0.933 27 H 0.158 0.842 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.763 4.852 15.901 16.853 hybrid contribution 0.154 0.004 -0.767 0.783 sum -2.609 4.856 15.134 16.107 Atomic orbital electron populations 1.22410 0.96660 1.01875 1.01854 1.21465 0.92051 0.96620 0.90903 0.92915 1.18990 0.95085 0.94181 0.91672 1.21453 0.93442 1.32251 1.06369 0.92774 1.25860 1.02841 0.95767 0.95826 1.70087 1.37087 1.38108 1.13042 0.85657 0.80731 0.78318 0.77222 1.21024 1.19602 1.19896 1.60384 1.58286 1.09272 1.02849 1.20346 0.94239 0.93613 0.90778 0.93512 1.22077 0.97582 0.99357 0.97596 1.22192 0.99136 1.01350 0.95530 1.20482 0.96847 1.01488 0.93534 1.21577 0.95863 0.99427 0.98012 1.21762 1.02117 0.98384 0.93249 0.91697 0.92615 0.92607 0.99108 0.99070 0.93271 0.84212 0.90864 0.88029 0.90697 0.89443 0.89454 0.91566 0.90555 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.63 9.15 71.98 0.66 -4.97 16 2 C 0.10 4.14 2.33 44.92 0.10 4.24 16 3 H 0.05 2.29 7.44 -2.39 -0.02 2.27 16 4 C 0.04 2.05 4.65 29.85 0.14 2.19 16 5 C -0.50 -29.22 8.84 25.60 0.23 -29.00 16 6 H 0.05 3.17 7.74 -2.91 -0.02 3.14 16 7 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 8 N -0.94 -59.27 13.29 21.45 0.28 -58.99 16 9 Si 0.95 46.89 29.54 68.60 2.03 48.92 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.68 -25.72 5.75 -474.28 -2.73 -28.45 16 14 C 0.12 3.71 2.57 43.98 0.11 3.83 16 15 H 0.05 1.41 7.10 -2.38 -0.02 1.39 16 16 C -0.15 -4.97 9.07 27.03 0.25 -4.72 16 17 C -0.16 -4.55 9.80 27.03 0.26 -4.28 16 18 C -0.09 -1.80 6.11 29.66 0.18 -1.62 16 19 C -0.11 -2.13 6.01 30.74 0.18 -1.94 16 20 C -0.12 -2.84 5.26 30.74 0.16 -2.68 16 21 H 0.06 1.81 7.43 -2.38 -0.02 1.79 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 24 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.34 11.83 8.09 -89.69 -0.73 11.11 16 28 H 0.07 2.93 7.82 -2.91 -0.02 2.91 16 29 H 0.10 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.67 8.12 -2.39 -0.02 1.65 16 Total: -1.00 -66.46 282.51 2.63 -63.82 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.31 Total: 13.61 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 2.74 Total: -38.92 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.44 Total: -87.44 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -66.46 2.63 -63.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379399181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.689 kcal (2) G-P(sol) polarization free energy of solvation -66.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds