Wall clock time and date at job start Mon Mar 30 2020 02:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.53001 * 109.47455 * 120.00791 * 2 1 3 5 5 C 1.50693 * 109.47492 * 184.99781 * 4 2 1 6 6 H 1.08007 * 119.99583 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00251 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00147 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00212 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47124 * 89.99566 * 9 7 5 11 11 H 1.48491 * 109.47365 * 210.00113 * 9 7 5 12 12 H 1.48504 * 109.46642 * 330.00099 * 9 7 5 13 13 N 1.46903 * 109.46890 * 240.00446 * 2 1 3 14 14 C 1.46902 * 110.99967 * 84.99754 * 13 2 1 15 15 H 1.08993 * 109.35733 * 324.72732 * 14 13 2 16 16 C 1.50072 * 109.22650 * 84.45793 * 14 13 2 17 17 C 1.29443 * 124.07412 * 137.68214 * 16 14 13 18 18 C 1.50070 * 124.07366 * 359.00582 * 17 16 14 19 19 C 1.53031 * 110.14643 * 17.39440 * 18 17 16 20 20 C 1.53018 * 109.35763 * 204.99848 * 14 13 2 21 21 H 1.09001 * 109.47043 * 299.99091 * 1 2 3 22 22 H 1.08996 * 109.47258 * 59.99358 * 1 2 3 23 23 H 1.09005 * 109.47554 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46686 * 305.00120 * 4 2 1 25 25 H 1.09001 * 109.47171 * 64.99629 * 4 2 1 26 26 H 0.96999 * 120.00041 * 179.97438 * 8 7 5 27 27 H 1.00904 * 111.00028 * 321.04835 * 13 2 1 28 28 H 1.08005 * 117.96869 * 317.44063 * 16 14 13 29 29 H 1.08002 * 117.96781 * 179.29694 * 17 16 14 30 30 H 1.08997 * 109.35957 * 137.60317 * 18 17 16 31 31 H 1.08999 * 109.36090 * 257.18937 * 18 17 16 32 32 H 1.08996 * 109.63819 * 70.24884 * 19 18 17 33 33 H 1.09001 * 109.63955 * 190.88160 * 19 18 17 34 34 H 1.09001 * 109.64183 * 70.67520 * 20 14 13 35 35 H 1.09005 * 109.64707 * 310.04269 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3126 6 1 4.0790 -0.0863 0.5390 7 6 4.2303 -1.1930 2.3580 8 7 5.5411 -1.1006 2.4132 9 14 3.3015 -2.1083 3.6956 10 1 3.1709 -3.5383 3.3175 11 1 4.0448 -2.0008 4.9766 12 1 1.9504 -1.5132 3.8558 13 7 2.0196 -0.6924 -1.1995 14 6 2.0823 0.2228 -2.3469 15 1 1.2540 0.9290 -2.2914 16 6 3.3815 0.9731 -2.3102 17 6 4.1160 1.2028 -3.3510 18 6 3.7817 0.7325 -4.7363 19 6 2.3030 0.3475 -4.8198 20 6 1.9766 -0.5821 -3.6440 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6054 -0.2620 2.1369 25 1 1.7517 -1.7717 1.2054 26 1 6.0254 -1.5069 3.1489 27 1 1.4494 -1.4978 -1.4102 28 1 3.7231 1.3480 -1.3566 29 1 5.0284 1.7639 -3.2131 30 1 3.9878 1.5313 -5.4487 31 1 4.3951 -0.1345 -4.9815 32 1 1.6869 1.2446 -4.7596 33 1 2.1116 -0.1698 -5.7600 34 1 0.9636 -0.9694 -3.7534 35 1 2.6875 -1.4081 -3.6218 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379399183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:20 Heat of formation + Delta-G solvation = -1.370887 kcal Electronic energy + Delta-G solvation = -14036.761106 eV Core-core repulsion = 11841.126123 eV Total energy + Delta-G solvation = -2195.634982 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.66693 -35.90235 -32.56006 -31.03712 -30.69214 -27.91062 -27.07658 -22.93568 -22.16474 -21.80513 -19.47230 -17.50248 -16.54397 -15.96114 -15.01670 -14.54979 -14.01584 -13.71397 -13.13617 -12.82846 -12.48524 -12.41201 -12.16799 -12.12474 -11.98620 -11.64943 -11.38774 -10.81232 -10.69580 -10.44198 -10.10250 -9.84057 -9.69326 -9.51433 -8.98023 -8.62081 -8.37368 -7.56497 -5.85800 -3.79195 2.77011 3.39684 3.46643 3.49223 4.58917 4.74918 4.94132 5.00512 5.26096 5.48615 5.53041 5.62457 5.66469 5.69796 5.76569 5.82046 5.84263 5.99085 6.00636 6.07663 6.12790 6.34853 6.47802 6.50387 6.59825 6.86414 7.14688 7.22172 7.32099 7.43374 7.87286 7.97295 8.16088 8.78153 9.26282 9.77473 11.28346 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.008463 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.663800 B = 3307.902772 C = 3804.619728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.097 3.903 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.487 4.487 6 H 0.077 0.923 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.657 5.657 14 C 0.117 3.883 15 H 0.043 0.957 16 C -0.112 4.112 17 C -0.180 4.180 18 C -0.085 4.085 19 C -0.115 4.115 20 C -0.122 4.122 21 H 0.056 0.944 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.015 0.985 25 H 0.011 0.989 26 H 0.259 0.741 27 H 0.332 0.668 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 2.811 -11.870 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.013 4.013 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.525 4.525 6 H 0.096 0.904 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.287 5.287 14 C 0.007 3.993 15 H 0.061 0.939 16 C -0.130 4.130 17 C -0.199 4.199 18 C -0.122 4.122 19 C -0.153 4.153 20 C -0.160 4.160 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.728 2.837 -11.580 14.208 hybrid contribution -1.218 -0.474 0.712 1.488 sum -8.945 2.364 -10.868 14.273 Atomic orbital electron populations 1.22599 0.99546 1.01184 1.00865 1.21608 0.89606 0.98390 0.91687 0.91175 1.19605 0.97885 0.95070 0.91597 1.21057 0.89514 1.33636 1.08284 0.90449 1.25019 0.94678 0.96397 0.97895 1.69916 1.06402 1.46434 1.32306 0.86869 0.80322 0.80628 0.81882 1.20638 1.21749 1.19390 1.60512 1.57660 1.08302 1.02209 1.20318 0.94821 0.93668 0.90466 0.93926 1.22143 0.95719 0.96748 0.98420 1.21870 1.00127 1.03484 0.94411 1.20383 0.96093 1.00470 0.95270 1.21562 0.96564 0.99350 0.97854 1.21779 1.01298 0.98814 0.94078 0.92492 0.94054 0.93058 0.96644 0.97101 0.93164 0.84988 0.87215 0.88295 0.91890 0.91340 0.92122 0.92032 0.92362 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.15 37.16 0.34 -2.57 16 2 C 0.10 1.90 2.33 -67.71 -0.16 1.74 16 3 H 0.07 1.45 7.38 -51.93 -0.38 1.06 16 4 C 0.00 -0.09 3.72 -27.89 -0.10 -0.20 16 5 C -0.49 -14.03 9.39 -34.45 -0.32 -14.35 16 6 H 0.08 2.43 7.99 -52.48 -0.42 2.01 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.85 13.96 55.43 0.77 -28.08 16 9 Si 0.87 22.33 27.47 -169.99 -4.67 17.66 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 13 N -0.66 -12.28 5.74 -101.27 -0.58 -12.86 16 14 C 0.12 1.88 2.58 -69.16 -0.18 1.70 16 15 H 0.04 0.67 7.10 -51.93 -0.37 0.30 16 16 C -0.11 -1.96 9.05 -35.90 -0.32 -2.28 16 17 C -0.18 -2.77 9.80 -35.90 -0.35 -3.12 16 18 C -0.09 -1.06 6.12 -28.17 -0.17 -1.23 16 19 C -0.12 -1.34 6.01 -26.51 -0.16 -1.50 16 20 C -0.12 -1.63 5.26 -26.52 -0.14 -1.77 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.58 7.42 -51.93 -0.39 0.20 16 23 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 24 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 26 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 27 H 0.33 5.65 8.09 -39.29 -0.32 5.33 16 28 H 0.11 2.22 7.78 -52.48 -0.41 1.81 16 29 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 LS Contribution 278.80 15.07 4.20 4.20 Total: -1.00 -31.03 278.80 -7.96 -39.00 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.02 Total: 1.99 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -1.67 Total: -21.91 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.19 Total: -40.94 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.03 -7.96 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379399183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.627 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds