Wall clock time and date at job start Mon Mar 30 2020 02:28:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08997 * 109.47230 * 2 1
4 4 C 1.53001 * 109.47455 * 120.00791 * 2 1 3
5 5 C 1.50693 * 109.47492 * 184.99781 * 4 2 1
6 6 H 1.08007 * 119.99583 * 359.97438 * 5 4 2
7 7 C 1.37871 * 120.00251 * 179.97438 * 5 4 2
8 8 N 1.31513 * 120.00147 * 179.97438 * 7 5 4
9 9 Si 1.86804 * 120.00212 * 0.02562 * 7 5 4
10 10 H 1.48493 * 109.47124 * 89.99566 * 9 7 5
11 11 H 1.48491 * 109.47365 * 210.00113 * 9 7 5
12 12 H 1.48504 * 109.46642 * 330.00099 * 9 7 5
13 13 N 1.46903 * 109.46890 * 240.00446 * 2 1 3
14 14 C 1.46902 * 110.99967 * 84.99754 * 13 2 1
15 15 H 1.08993 * 109.35733 * 324.72732 * 14 13 2
16 16 C 1.50072 * 109.22650 * 84.45793 * 14 13 2
17 17 C 1.29443 * 124.07412 * 137.68214 * 16 14 13
18 18 C 1.50070 * 124.07366 * 359.00582 * 17 16 14
19 19 C 1.53031 * 110.14643 * 17.39440 * 18 17 16
20 20 C 1.53018 * 109.35763 * 204.99848 * 14 13 2
21 21 H 1.09001 * 109.47043 * 299.99091 * 1 2 3
22 22 H 1.08996 * 109.47258 * 59.99358 * 1 2 3
23 23 H 1.09005 * 109.47554 * 179.97438 * 1 2 3
24 24 H 1.09006 * 109.46686 * 305.00120 * 4 2 1
25 25 H 1.09001 * 109.47171 * 64.99629 * 4 2 1
26 26 H 0.96999 * 120.00041 * 179.97438 * 8 7 5
27 27 H 1.00904 * 111.00028 * 321.04835 * 13 2 1
28 28 H 1.08005 * 117.96869 * 317.44063 * 16 14 13
29 29 H 1.08002 * 117.96781 * 179.29694 * 17 16 14
30 30 H 1.08997 * 109.35957 * 137.60317 * 18 17 16
31 31 H 1.08999 * 109.36090 * 257.18937 * 18 17 16
32 32 H 1.08996 * 109.63819 * 70.24884 * 19 18 17
33 33 H 1.09001 * 109.63955 * 190.88160 * 19 18 17
34 34 H 1.09001 * 109.64183 * 70.67520 * 20 14 13
35 35 H 1.09005 * 109.64707 * 310.04269 * 20 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7214 1.2491
5 6 3.5419 -0.6151 1.3126
6 1 4.0790 -0.0863 0.5390
7 6 4.2303 -1.1930 2.3580
8 7 5.5411 -1.1006 2.4132
9 14 3.3015 -2.1083 3.6956
10 1 3.1709 -3.5383 3.3175
11 1 4.0448 -2.0008 4.9766
12 1 1.9504 -1.5132 3.8558
13 7 2.0196 -0.6924 -1.1995
14 6 2.0823 0.2228 -2.3469
15 1 1.2540 0.9290 -2.2914
16 6 3.3815 0.9731 -2.3102
17 6 4.1160 1.2028 -3.3510
18 6 3.7817 0.7325 -4.7363
19 6 2.3030 0.3475 -4.8198
20 6 1.9766 -0.5821 -3.6440
21 1 -0.3633 0.5137 0.8901
22 1 -0.3633 0.5139 -0.8899
23 1 -0.3634 -1.0277 -0.0005
24 1 1.6054 -0.2620 2.1369
25 1 1.7517 -1.7717 1.2054
26 1 6.0254 -1.5069 3.1489
27 1 1.4494 -1.4978 -1.4102
28 1 3.7231 1.3480 -1.3566
29 1 5.0284 1.7639 -3.2131
30 1 3.9878 1.5313 -5.4487
31 1 4.3951 -0.1345 -4.9815
32 1 1.6869 1.2446 -4.7596
33 1 2.1116 -0.1698 -5.7600
34 1 0.9636 -0.9694 -3.7534
35 1 2.6875 -1.4081 -3.6218
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379399183.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:28:20
Heat of formation + Delta-G solvation = -1.370887 kcal
Electronic energy + Delta-G solvation = -14036.761106 eV
Core-core repulsion = 11841.126123 eV
Total energy + Delta-G solvation = -2195.634982 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-38.66693 -35.90235 -32.56006 -31.03712 -30.69214 -27.91062 -27.07658 -22.93568
-22.16474 -21.80513 -19.47230 -17.50248 -16.54397 -15.96114 -15.01670 -14.54979
-14.01584 -13.71397 -13.13617 -12.82846 -12.48524 -12.41201 -12.16799 -12.12474
-11.98620 -11.64943 -11.38774 -10.81232 -10.69580 -10.44198 -10.10250 -9.84057
-9.69326 -9.51433 -8.98023 -8.62081 -8.37368 -7.56497 -5.85800 -3.79195
2.77011 3.39684 3.46643 3.49223 4.58917 4.74918 4.94132 5.00512
5.26096 5.48615 5.53041 5.62457 5.66469 5.69796 5.76569 5.82046
5.84263 5.99085 6.00636 6.07663 6.12790 6.34853 6.47802 6.50387
6.59825 6.86414 7.14688 7.22172 7.32099 7.43374 7.87286 7.97295
8.16088 8.78153 9.26282 9.77473 11.28346
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.037846 B = 0.008463 C = 0.007358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 739.663800 B = 3307.902772 C = 3804.619728
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.097 3.903
3 H 0.070 0.930
4 C -0.004 4.004
5 C -0.487 4.487
6 H 0.077 0.923
7 C 0.059 3.941
8 N -0.910 5.910
9 Si 0.875 3.125
10 H -0.280 1.280
11 H -0.291 1.291
12 H -0.269 1.269
13 N -0.657 5.657
14 C 0.117 3.883
15 H 0.043 0.957
16 C -0.112 4.112
17 C -0.180 4.180
18 C -0.085 4.085
19 C -0.115 4.115
20 C -0.122 4.122
21 H 0.056 0.944
22 H 0.040 0.960
23 H 0.050 0.950
24 H 0.015 0.985
25 H 0.011 0.989
26 H 0.259 0.741
27 H 0.332 0.668
28 H 0.110 0.890
29 H 0.099 0.901
30 H 0.062 0.938
31 H 0.068 0.932
32 H 0.060 0.940
33 H 0.061 0.939
34 H 0.058 0.942
35 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.542 2.811 -11.870 14.892
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.013 4.013
3 H 0.088 0.912
4 C -0.042 4.042
5 C -0.525 4.525
6 H 0.096 0.904
7 C -0.140 4.140
8 N -0.551 5.551
9 Si 0.703 3.297
10 H -0.206 1.206
11 H -0.217 1.217
12 H -0.194 1.194
13 N -0.287 5.287
14 C 0.007 3.993
15 H 0.061 0.939
16 C -0.130 4.130
17 C -0.199 4.199
18 C -0.122 4.122
19 C -0.153 4.153
20 C -0.160 4.160
21 H 0.075 0.925
22 H 0.059 0.941
23 H 0.069 0.931
24 H 0.034 0.966
25 H 0.029 0.971
26 H 0.068 0.932
27 H 0.150 0.850
28 H 0.128 0.872
29 H 0.117 0.883
30 H 0.081 0.919
31 H 0.087 0.913
32 H 0.079 0.921
33 H 0.080 0.920
34 H 0.076 0.924
35 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -7.728 2.837 -11.580 14.208
hybrid contribution -1.218 -0.474 0.712 1.488
sum -8.945 2.364 -10.868 14.273
Atomic orbital electron populations
1.22599 0.99546 1.01184 1.00865 1.21608 0.89606 0.98390 0.91687
0.91175 1.19605 0.97885 0.95070 0.91597 1.21057 0.89514 1.33636
1.08284 0.90449 1.25019 0.94678 0.96397 0.97895 1.69916 1.06402
1.46434 1.32306 0.86869 0.80322 0.80628 0.81882 1.20638 1.21749
1.19390 1.60512 1.57660 1.08302 1.02209 1.20318 0.94821 0.93668
0.90466 0.93926 1.22143 0.95719 0.96748 0.98420 1.21870 1.00127
1.03484 0.94411 1.20383 0.96093 1.00470 0.95270 1.21562 0.96564
0.99350 0.97854 1.21779 1.01298 0.98814 0.94078 0.92492 0.94054
0.93058 0.96644 0.97101 0.93164 0.84988 0.87215 0.88295 0.91890
0.91340 0.92122 0.92032 0.92362 0.90641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.91 9.15 37.16 0.34 -2.57 16
2 C 0.10 1.90 2.33 -67.71 -0.16 1.74 16
3 H 0.07 1.45 7.38 -51.93 -0.38 1.06 16
4 C 0.00 -0.09 3.72 -27.89 -0.10 -0.20 16
5 C -0.49 -14.03 9.39 -34.45 -0.32 -14.35 16
6 H 0.08 2.43 7.99 -52.48 -0.42 2.01 16
7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16
8 N -0.91 -28.85 13.96 55.43 0.77 -28.08 16
9 Si 0.87 22.33 27.47 -169.99 -4.67 17.66 16
10 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16
11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
12 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16
13 N -0.66 -12.28 5.74 -101.27 -0.58 -12.86 16
14 C 0.12 1.88 2.58 -69.16 -0.18 1.70 16
15 H 0.04 0.67 7.10 -51.93 -0.37 0.30 16
16 C -0.11 -1.96 9.05 -35.90 -0.32 -2.28 16
17 C -0.18 -2.77 9.80 -35.90 -0.35 -3.12 16
18 C -0.09 -1.06 6.12 -28.17 -0.17 -1.23 16
19 C -0.12 -1.34 6.01 -26.51 -0.16 -1.50 16
20 C -0.12 -1.63 5.26 -26.52 -0.14 -1.77 16
21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
22 H 0.04 0.58 7.42 -51.93 -0.39 0.20 16
23 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16
24 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16
25 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16
26 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16
27 H 0.33 5.65 8.09 -39.29 -0.32 5.33 16
28 H 0.11 2.22 7.78 -52.48 -0.41 1.81 16
29 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16
30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
32 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16
33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
35 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16
LS Contribution 278.80 15.07 4.20 4.20
Total: -1.00 -31.03 278.80 -7.96 -39.00
By element:
Atomic # 1 Polarization: 8.01 SS G_CDS: -6.02 Total: 1.99 kcal
Atomic # 6 Polarization: -20.24 SS G_CDS: -1.67 Total: -21.91 kcal
Atomic # 7 Polarization: -41.13 SS G_CDS: 0.19 Total: -40.94 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -31.03 -7.96 -39.00 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379399183.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.627 kcal
(2) G-P(sol) polarization free energy of solvation -31.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.371 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds