Wall clock time and date at job start Mon Mar 30 2020 02:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.53001 * 109.47455 * 120.00791 * 2 1 3 5 5 C 1.50693 * 109.47492 * 184.99781 * 4 2 1 6 6 H 1.08007 * 119.99583 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00251 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00147 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00212 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47124 * 89.99566 * 9 7 5 11 11 H 1.48491 * 109.47365 * 210.00113 * 9 7 5 12 12 H 1.48504 * 109.46642 * 330.00099 * 9 7 5 13 13 N 1.46903 * 109.46890 * 240.00446 * 2 1 3 14 14 C 1.46902 * 110.99967 * 84.99754 * 13 2 1 15 15 H 1.08993 * 109.35733 * 324.72732 * 14 13 2 16 16 C 1.50072 * 109.22650 * 84.45793 * 14 13 2 17 17 C 1.29443 * 124.07412 * 137.68214 * 16 14 13 18 18 C 1.50070 * 124.07366 * 359.00582 * 17 16 14 19 19 C 1.53031 * 110.14643 * 17.39440 * 18 17 16 20 20 C 1.53018 * 109.35763 * 204.99848 * 14 13 2 21 21 H 1.09001 * 109.47043 * 299.99091 * 1 2 3 22 22 H 1.08996 * 109.47258 * 59.99358 * 1 2 3 23 23 H 1.09005 * 109.47554 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46686 * 305.00120 * 4 2 1 25 25 H 1.09001 * 109.47171 * 64.99629 * 4 2 1 26 26 H 0.96999 * 120.00041 * 179.97438 * 8 7 5 27 27 H 1.00904 * 111.00028 * 321.04835 * 13 2 1 28 28 H 1.08005 * 117.96869 * 317.44063 * 16 14 13 29 29 H 1.08002 * 117.96781 * 179.29694 * 17 16 14 30 30 H 1.08997 * 109.35957 * 137.60317 * 18 17 16 31 31 H 1.08999 * 109.36090 * 257.18937 * 18 17 16 32 32 H 1.08996 * 109.63819 * 70.24884 * 19 18 17 33 33 H 1.09001 * 109.63955 * 190.88160 * 19 18 17 34 34 H 1.09001 * 109.64183 * 70.67520 * 20 14 13 35 35 H 1.09005 * 109.64707 * 310.04269 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3126 6 1 4.0790 -0.0863 0.5390 7 6 4.2303 -1.1930 2.3580 8 7 5.5411 -1.1006 2.4132 9 14 3.3015 -2.1083 3.6956 10 1 3.1709 -3.5383 3.3175 11 1 4.0448 -2.0008 4.9766 12 1 1.9504 -1.5132 3.8558 13 7 2.0196 -0.6924 -1.1995 14 6 2.0823 0.2228 -2.3469 15 1 1.2540 0.9290 -2.2914 16 6 3.3815 0.9731 -2.3102 17 6 4.1160 1.2028 -3.3510 18 6 3.7817 0.7325 -4.7363 19 6 2.3030 0.3475 -4.8198 20 6 1.9766 -0.5821 -3.6440 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6054 -0.2620 2.1369 25 1 1.7517 -1.7717 1.2054 26 1 6.0254 -1.5069 3.1489 27 1 1.4494 -1.4978 -1.4102 28 1 3.7231 1.3480 -1.3566 29 1 5.0284 1.7639 -3.2131 30 1 3.9878 1.5313 -5.4487 31 1 4.3951 -0.1345 -4.9815 32 1 1.6869 1.2446 -4.7596 33 1 2.1116 -0.1698 -5.7600 34 1 0.9636 -0.9694 -3.7534 35 1 2.6875 -1.4081 -3.6218 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379399183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:19 Heat of formation + Delta-G solvation = -21.568423 kcal Electronic energy + Delta-G solvation = -14037.636937 eV Core-core repulsion = 11841.126123 eV Total energy + Delta-G solvation = -2196.510813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.92041 -37.35501 -34.66895 -32.58214 -31.85721 -29.74645 -28.34970 -24.75022 -23.34024 -23.15262 -21.09602 -18.84075 -18.61757 -17.29570 -16.38875 -16.30836 -15.63766 -15.02201 -14.68879 -14.24183 -14.07005 -13.85100 -13.59882 -13.38860 -13.29564 -13.13753 -12.90229 -12.54763 -12.03854 -11.78692 -11.69061 -11.56645 -11.27076 -11.09056 -11.00855 -10.66906 -9.89810 -8.98263 -8.16552 -6.15306 1.37167 1.39002 1.44563 1.50169 2.42869 3.16630 3.47323 3.81210 3.94959 4.16116 4.23441 4.36700 4.46424 4.47860 4.55900 4.57938 4.69659 4.83990 4.93160 5.02901 5.06803 5.13020 5.14825 5.21472 5.27681 5.39494 5.45599 5.54783 5.77343 5.82650 6.10100 6.38002 6.54215 6.81300 6.93453 7.45004 9.01170 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.008463 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.663800 B = 3307.902772 C = 3804.619728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 H 0.048 0.952 4 C -0.002 4.002 5 C -0.488 4.488 6 H 0.031 0.969 7 C -0.008 4.008 8 N -0.962 5.962 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.247 1.247 13 N -0.681 5.681 14 C 0.123 3.877 15 H 0.051 0.949 16 C -0.146 4.146 17 C -0.166 4.166 18 C -0.086 4.086 19 C -0.110 4.110 20 C -0.116 4.116 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.019 0.981 25 H 0.016 0.984 26 H 0.260 0.740 27 H 0.342 0.658 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 2.070 -13.081 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 H 0.066 0.934 4 C -0.040 4.040 5 C -0.527 4.527 6 H 0.050 0.950 7 C -0.203 4.203 8 N -0.604 5.604 9 Si 0.774 3.226 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.170 1.170 13 N -0.313 5.313 14 C 0.014 3.986 15 H 0.068 0.932 16 C -0.165 4.165 17 C -0.185 4.185 18 C -0.122 4.122 19 C -0.148 4.148 20 C -0.154 4.154 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.161 0.839 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.302 2.104 -12.809 16.572 hybrid contribution -0.290 -0.160 1.015 1.067 sum -10.592 1.944 -11.794 15.971 Atomic orbital electron populations 1.22430 0.95786 1.02444 1.02242 1.21358 0.92450 0.96519 0.90525 0.93368 1.19573 0.94407 0.95906 0.94119 1.21336 0.92239 1.32283 1.06811 0.95016 1.26011 0.95566 0.97749 1.00942 1.70099 1.08534 1.48239 1.33575 0.85676 0.79626 0.79271 0.78064 1.19714 1.21566 1.17027 1.60337 1.58489 1.09464 1.02983 1.20317 0.93841 0.93562 0.90924 0.93162 1.22080 0.97977 0.99324 0.97156 1.22186 0.98959 1.01455 0.95851 1.20480 0.97226 1.01393 0.93144 1.21575 0.95586 0.99485 0.98155 1.21760 1.02313 0.98265 0.93086 0.91959 0.91879 0.91788 0.96303 0.96557 0.93148 0.83863 0.91792 0.88684 0.89405 0.90821 0.91409 0.89228 0.90024 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 9.15 71.98 0.66 -4.31 16 2 C 0.10 3.98 2.33 44.91 0.10 4.08 16 3 H 0.05 2.07 7.38 -2.39 -0.02 2.05 16 4 C 0.00 -0.11 3.72 29.85 0.11 0.00 16 5 C -0.49 -29.19 9.39 25.60 0.24 -28.95 16 6 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 7 C -0.01 -0.52 5.47 84.65 0.46 -0.06 16 8 N -0.96 -63.30 13.96 21.44 0.30 -63.00 16 9 Si 0.95 46.27 27.47 68.60 1.88 48.15 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 13 N -0.68 -25.48 5.74 -474.30 -2.72 -28.20 16 14 C 0.12 3.89 2.58 43.98 0.11 4.01 16 15 H 0.05 1.51 7.10 -2.39 -0.02 1.49 16 16 C -0.15 -5.38 9.05 27.04 0.24 -5.14 16 17 C -0.17 -5.15 9.80 27.04 0.27 -4.88 16 18 C -0.09 -1.94 6.12 29.66 0.18 -1.76 16 19 C -0.11 -2.19 6.01 30.74 0.18 -2.00 16 20 C -0.12 -2.85 5.26 30.73 0.16 -2.69 16 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.06 1.58 7.42 -2.39 -0.02 1.56 16 23 H 0.06 1.72 8.13 -2.38 -0.02 1.70 16 24 H 0.02 0.88 7.20 -2.38 -0.02 0.87 16 25 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 26 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 27 H 0.34 11.19 8.09 -89.69 -0.73 10.47 16 28 H 0.06 2.88 7.78 -2.91 -0.02 2.86 16 29 H 0.10 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.67 8.12 -2.38 -0.02 1.65 16 Total: -1.00 -70.10 278.80 2.44 -67.65 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.26 Total: 17.09 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 2.73 Total: -41.69 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -2.43 Total: -91.20 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.15 kcal Total: -70.10 2.44 -67.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379399183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.086 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds