Wall clock time and date at job start Mon Mar 30 2020 02:28:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08997 * 109.47230 * 2 1
4 4 C 1.53001 * 109.47455 * 120.00791 * 2 1 3
5 5 C 1.50693 * 109.47492 * 184.99781 * 4 2 1
6 6 H 1.08007 * 119.99583 * 359.97438 * 5 4 2
7 7 C 1.37871 * 120.00251 * 179.97438 * 5 4 2
8 8 N 1.31513 * 120.00147 * 179.97438 * 7 5 4
9 9 Si 1.86804 * 120.00212 * 0.02562 * 7 5 4
10 10 H 1.48493 * 109.47124 * 89.99566 * 9 7 5
11 11 H 1.48491 * 109.47365 * 210.00113 * 9 7 5
12 12 H 1.48504 * 109.46642 * 330.00099 * 9 7 5
13 13 N 1.46903 * 109.46890 * 240.00446 * 2 1 3
14 14 C 1.46902 * 110.99967 * 84.99754 * 13 2 1
15 15 H 1.08993 * 109.35733 * 324.72732 * 14 13 2
16 16 C 1.50072 * 109.22650 * 84.45793 * 14 13 2
17 17 C 1.29443 * 124.07412 * 137.68214 * 16 14 13
18 18 C 1.50070 * 124.07366 * 359.00582 * 17 16 14
19 19 C 1.53031 * 110.14643 * 17.39440 * 18 17 16
20 20 C 1.53018 * 109.35763 * 204.99848 * 14 13 2
21 21 H 1.09001 * 109.47043 * 299.99091 * 1 2 3
22 22 H 1.08996 * 109.47258 * 59.99358 * 1 2 3
23 23 H 1.09005 * 109.47554 * 179.97438 * 1 2 3
24 24 H 1.09006 * 109.46686 * 305.00120 * 4 2 1
25 25 H 1.09001 * 109.47171 * 64.99629 * 4 2 1
26 26 H 0.96999 * 120.00041 * 179.97438 * 8 7 5
27 27 H 1.00904 * 111.00028 * 321.04835 * 13 2 1
28 28 H 1.08005 * 117.96869 * 317.44063 * 16 14 13
29 29 H 1.08002 * 117.96781 * 179.29694 * 17 16 14
30 30 H 1.08997 * 109.35957 * 137.60317 * 18 17 16
31 31 H 1.08999 * 109.36090 * 257.18937 * 18 17 16
32 32 H 1.08996 * 109.63819 * 70.24884 * 19 18 17
33 33 H 1.09001 * 109.63955 * 190.88160 * 19 18 17
34 34 H 1.09001 * 109.64183 * 70.67520 * 20 14 13
35 35 H 1.09005 * 109.64707 * 310.04269 * 20 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7214 1.2491
5 6 3.5419 -0.6151 1.3126
6 1 4.0790 -0.0863 0.5390
7 6 4.2303 -1.1930 2.3580
8 7 5.5411 -1.1006 2.4132
9 14 3.3015 -2.1083 3.6956
10 1 3.1709 -3.5383 3.3175
11 1 4.0448 -2.0008 4.9766
12 1 1.9504 -1.5132 3.8558
13 7 2.0196 -0.6924 -1.1995
14 6 2.0823 0.2228 -2.3469
15 1 1.2540 0.9290 -2.2914
16 6 3.3815 0.9731 -2.3102
17 6 4.1160 1.2028 -3.3510
18 6 3.7817 0.7325 -4.7363
19 6 2.3030 0.3475 -4.8198
20 6 1.9766 -0.5821 -3.6440
21 1 -0.3633 0.5137 0.8901
22 1 -0.3633 0.5139 -0.8899
23 1 -0.3634 -1.0277 -0.0005
24 1 1.6054 -0.2620 2.1369
25 1 1.7517 -1.7717 1.2054
26 1 6.0254 -1.5069 3.1489
27 1 1.4494 -1.4978 -1.4102
28 1 3.7231 1.3480 -1.3566
29 1 5.0284 1.7639 -3.2131
30 1 3.9878 1.5313 -5.4487
31 1 4.3951 -0.1345 -4.9815
32 1 1.6869 1.2446 -4.7596
33 1 2.1116 -0.1698 -5.7600
34 1 0.9636 -0.9694 -3.7534
35 1 2.6875 -1.4081 -3.6218
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379399183.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:28:19
Heat of formation + Delta-G solvation = -21.568423 kcal
Electronic energy + Delta-G solvation = -14037.636937 eV
Core-core repulsion = 11841.126123 eV
Total energy + Delta-G solvation = -2196.510813 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.92041 -37.35501 -34.66895 -32.58214 -31.85721 -29.74645 -28.34970 -24.75022
-23.34024 -23.15262 -21.09602 -18.84075 -18.61757 -17.29570 -16.38875 -16.30836
-15.63766 -15.02201 -14.68879 -14.24183 -14.07005 -13.85100 -13.59882 -13.38860
-13.29564 -13.13753 -12.90229 -12.54763 -12.03854 -11.78692 -11.69061 -11.56645
-11.27076 -11.09056 -11.00855 -10.66906 -9.89810 -8.98263 -8.16552 -6.15306
1.37167 1.39002 1.44563 1.50169 2.42869 3.16630 3.47323 3.81210
3.94959 4.16116 4.23441 4.36700 4.46424 4.47860 4.55900 4.57938
4.69659 4.83990 4.93160 5.02901 5.06803 5.13020 5.14825 5.21472
5.27681 5.39494 5.45599 5.54783 5.77343 5.82650 6.10100 6.38002
6.54215 6.81300 6.93453 7.45004 9.01170
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.037846 B = 0.008463 C = 0.007358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 739.663800 B = 3307.902772 C = 3804.619728
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.101 3.899
3 H 0.048 0.952
4 C -0.002 4.002
5 C -0.488 4.488
6 H 0.031 0.969
7 C -0.008 4.008
8 N -0.962 5.962
9 Si 0.949 3.051
10 H -0.272 1.272
11 H -0.289 1.289
12 H -0.247 1.247
13 N -0.681 5.681
14 C 0.123 3.877
15 H 0.051 0.949
16 C -0.146 4.146
17 C -0.166 4.166
18 C -0.086 4.086
19 C -0.110 4.110
20 C -0.116 4.116
21 H 0.061 0.939
22 H 0.062 0.938
23 H 0.063 0.937
24 H 0.019 0.981
25 H 0.016 0.984
26 H 0.260 0.740
27 H 0.342 0.658
28 H 0.064 0.936
29 H 0.095 0.905
30 H 0.088 0.912
31 H 0.073 0.927
32 H 0.067 0.933
33 H 0.089 0.911
34 H 0.081 0.919
35 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.091 2.070 -13.081 17.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.009 4.009
3 H 0.066 0.934
4 C -0.040 4.040
5 C -0.527 4.527
6 H 0.050 0.950
7 C -0.203 4.203
8 N -0.604 5.604
9 Si 0.774 3.226
10 H -0.197 1.197
11 H -0.216 1.216
12 H -0.170 1.170
13 N -0.313 5.313
14 C 0.014 3.986
15 H 0.068 0.932
16 C -0.165 4.165
17 C -0.185 4.185
18 C -0.122 4.122
19 C -0.148 4.148
20 C -0.154 4.154
21 H 0.080 0.920
22 H 0.081 0.919
23 H 0.082 0.918
24 H 0.037 0.963
25 H 0.034 0.966
26 H 0.069 0.931
27 H 0.161 0.839
28 H 0.082 0.918
29 H 0.113 0.887
30 H 0.106 0.894
31 H 0.092 0.908
32 H 0.086 0.914
33 H 0.108 0.892
34 H 0.100 0.900
35 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -10.302 2.104 -12.809 16.572
hybrid contribution -0.290 -0.160 1.015 1.067
sum -10.592 1.944 -11.794 15.971
Atomic orbital electron populations
1.22430 0.95786 1.02444 1.02242 1.21358 0.92450 0.96519 0.90525
0.93368 1.19573 0.94407 0.95906 0.94119 1.21336 0.92239 1.32283
1.06811 0.95016 1.26011 0.95566 0.97749 1.00942 1.70099 1.08534
1.48239 1.33575 0.85676 0.79626 0.79271 0.78064 1.19714 1.21566
1.17027 1.60337 1.58489 1.09464 1.02983 1.20317 0.93841 0.93562
0.90924 0.93162 1.22080 0.97977 0.99324 0.97156 1.22186 0.98959
1.01455 0.95851 1.20480 0.97226 1.01393 0.93144 1.21575 0.95586
0.99485 0.98155 1.21760 1.02313 0.98265 0.93086 0.91959 0.91879
0.91788 0.96303 0.96557 0.93148 0.83863 0.91792 0.88684 0.89405
0.90821 0.91409 0.89228 0.90024 0.92133
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.97 9.15 71.98 0.66 -4.31 16
2 C 0.10 3.98 2.33 44.91 0.10 4.08 16
3 H 0.05 2.07 7.38 -2.39 -0.02 2.05 16
4 C 0.00 -0.11 3.72 29.85 0.11 0.00 16
5 C -0.49 -29.19 9.39 25.60 0.24 -28.95 16
6 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16
7 C -0.01 -0.52 5.47 84.65 0.46 -0.06 16
8 N -0.96 -63.30 13.96 21.44 0.30 -63.00 16
9 Si 0.95 46.27 27.47 68.60 1.88 48.15 16
10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16
12 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16
13 N -0.68 -25.48 5.74 -474.30 -2.72 -28.20 16
14 C 0.12 3.89 2.58 43.98 0.11 4.01 16
15 H 0.05 1.51 7.10 -2.39 -0.02 1.49 16
16 C -0.15 -5.38 9.05 27.04 0.24 -5.14 16
17 C -0.17 -5.15 9.80 27.04 0.27 -4.88 16
18 C -0.09 -1.94 6.12 29.66 0.18 -1.76 16
19 C -0.11 -2.19 6.01 30.74 0.18 -2.00 16
20 C -0.12 -2.85 5.26 30.73 0.16 -2.69 16
21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
22 H 0.06 1.58 7.42 -2.39 -0.02 1.56 16
23 H 0.06 1.72 8.13 -2.38 -0.02 1.70 16
24 H 0.02 0.88 7.20 -2.38 -0.02 0.87 16
25 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16
26 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16
27 H 0.34 11.19 8.09 -89.69 -0.73 10.47 16
28 H 0.06 2.88 7.78 -2.91 -0.02 2.86 16
29 H 0.10 2.93 8.06 -2.91 -0.02 2.91 16
30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16
31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16
32 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16
33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
35 H 0.06 1.67 8.12 -2.38 -0.02 1.65 16
Total: -1.00 -70.10 278.80 2.44 -67.65
By element:
Atomic # 1 Polarization: 16.83 SS G_CDS: 0.26 Total: 17.09 kcal
Atomic # 6 Polarization: -44.42 SS G_CDS: 2.73 Total: -41.69 kcal
Atomic # 7 Polarization: -88.77 SS G_CDS: -2.43 Total: -91.20 kcal
Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.15 kcal
Total: -70.10 2.44 -67.65 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379399183.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.086 kcal
(2) G-P(sol) polarization free energy of solvation -70.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.012 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.654 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.568 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds