Wall clock time and date at job start Mon Mar 30 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47093 * 240.00337 * 2 1 3 5 5 H 1.08004 * 119.99432 * 274.88023 * 4 2 1 6 6 C 1.37874 * 120.00362 * 94.88120 * 4 2 1 7 7 N 1.31520 * 120.00352 * 183.88261 * 6 4 2 8 8 Si 1.86800 * 119.99840 * 3.87450 * 6 4 2 9 9 H 1.48504 * 109.46930 * 84.42735 * 8 6 4 10 10 H 1.48501 * 109.47337 * 204.42748 * 8 6 4 11 11 H 1.48496 * 109.47533 * 324.43131 * 8 6 4 12 12 N 1.46891 * 109.46972 * 120.00201 * 2 1 3 13 13 C 1.46905 * 110.99947 * 176.04653 * 12 2 1 14 14 C 1.46905 * 111.00231 * 299.99836 * 12 2 1 15 15 C 1.50697 * 109.47013 * 170.00202 * 14 12 2 16 16 C 1.31000 * 119.99761 * 125.00400 * 15 14 12 17 17 C 1.51409 * 136.31820 * 359.62520 * 16 15 14 18 18 C 1.53374 * 87.52056 * 206.05643 * 17 16 15 19 19 C 1.51403 * 136.31642 * 179.97438 * 16 15 14 20 20 H 1.09004 * 109.46936 * 306.76892 * 1 2 3 21 21 H 1.09005 * 109.46726 * 66.76594 * 1 2 3 22 22 H 1.08992 * 109.47141 * 186.76596 * 1 2 3 23 23 H 0.96994 * 119.99841 * 180.02562 * 7 6 4 24 24 H 1.08999 * 109.47239 * 183.95069 * 13 12 2 25 25 H 1.08999 * 109.47256 * 63.95213 * 13 12 2 26 26 H 1.09001 * 109.47175 * 303.95594 * 13 12 2 27 27 H 1.09005 * 109.46925 * 290.00129 * 14 12 2 28 28 H 1.08998 * 109.47023 * 50.00057 * 14 12 2 29 29 H 1.08000 * 120.00417 * 304.99648 * 15 14 12 30 30 H 1.09000 * 113.55697 * 320.63989 * 17 16 15 31 31 H 1.09001 * 113.56274 * 91.37138 * 17 16 15 32 32 H 1.08997 * 113.97181 * 220.29305 * 18 17 16 33 33 H 1.09004 * 113.59673 * 88.79074 * 18 17 16 34 34 H 1.08999 * 113.56676 * 268.62913 * 19 16 15 35 35 H 1.09003 * 113.55846 * 39.36613 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1373 -1.7853 -1.2284 6 6 2.3580 0.0119 -2.3589 7 7 2.7233 -0.6129 -3.4570 8 14 2.2801 1.8780 -2.3281 9 1 3.5485 2.4173 -1.7754 10 1 2.0853 2.3883 -3.7090 11 1 1.1445 2.3121 -1.4753 12 7 2.0196 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8580 -0.8912 3.6158 16 6 2.5486 -0.4033 4.6163 17 6 3.2021 0.9203 4.9534 18 6 4.1720 0.1378 5.8475 19 6 3.0550 -0.9131 5.9490 20 1 -0.3633 0.6152 0.8233 21 1 -0.3633 0.4054 -0.9444 22 1 -0.3633 -1.0204 0.1211 23 1 2.9527 -0.1047 -4.2507 24 1 3.8164 -1.3721 2.0499 25 1 3.9193 0.2043 1.2300 26 1 3.8070 -1.2915 0.2718 27 1 2.0519 0.9346 2.5280 28 1 0.4722 0.1324 2.3564 29 1 1.5102 -1.9132 3.6473 30 1 3.6860 1.3969 4.1009 31 1 2.5520 1.5992 5.5053 32 1 4.3992 0.6312 6.7925 33 1 5.0611 -0.2135 5.3240 34 1 2.3647 -0.7369 6.7738 35 1 3.4185 -1.9401 5.9129 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:19 Heat of formation + Delta-G solvation = 22.082518 kcal Electronic energy + Delta-G solvation = -13944.185390 eV Core-core repulsion = 11749.567423 eV Total energy + Delta-G solvation = -2194.617966 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.87233 -38.58278 -34.85682 -32.88331 -31.17877 -28.16853 -26.71845 -26.28922 -24.65994 -22.54420 -20.99779 -19.19101 -18.46555 -16.95955 -16.44889 -16.30042 -16.03706 -15.28906 -15.01080 -14.60361 -14.23422 -13.80407 -13.26763 -13.20958 -12.96085 -12.87351 -12.64809 -12.35345 -12.24894 -12.11046 -11.94795 -11.82379 -11.57139 -11.16161 -10.94071 -10.75279 -9.67833 -8.98403 -8.29531 -6.31941 1.27933 1.30350 1.31670 1.41998 2.31214 3.01414 3.33931 3.63146 3.78238 3.90172 4.27151 4.37488 4.41975 4.53215 4.58106 4.63565 4.78477 4.81316 4.82188 4.88782 4.94184 4.98921 5.04314 5.13183 5.19793 5.25334 5.44280 5.47145 5.63090 5.67926 6.06380 6.10230 6.41318 6.69680 6.77791 7.33734 8.87399 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046957 B = 0.007431 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.145861 B = 3767.082080 C = 3832.037773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.178 3.822 3 H -0.005 1.005 4 C -0.498 4.498 5 H 0.035 0.965 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.934 3.066 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.247 1.247 12 N -0.540 5.540 13 C 0.052 3.948 14 C 0.083 3.917 15 C -0.127 4.127 16 C -0.173 4.173 17 C -0.111 4.111 18 C -0.131 4.131 19 C -0.096 4.096 20 H 0.054 0.946 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.266 0.734 24 H 0.067 0.933 25 H 0.006 0.994 26 H 0.050 0.950 27 H 0.024 0.976 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 4.375 18.235 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 H 0.013 0.987 4 C -0.537 4.537 5 H 0.054 0.946 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.758 3.242 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.171 1.171 12 N -0.265 5.265 13 C -0.097 4.097 14 C -0.044 4.044 15 C -0.145 4.145 16 C -0.174 4.174 17 C -0.148 4.148 18 C -0.168 4.168 19 C -0.133 4.133 20 H 0.073 0.927 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.024 0.976 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.309 3.932 18.041 18.467 hybrid contribution 0.503 1.263 -0.851 1.604 sum 0.194 5.194 17.190 17.958 Atomic orbital electron populations 1.21883 0.96006 1.01008 0.99772 1.19658 0.93659 0.91336 0.88313 0.98707 1.21032 1.42512 0.94092 0.96038 0.94621 1.25789 0.94542 1.02955 0.94922 1.70035 1.48009 1.37694 1.02868 0.85936 0.79750 0.80828 0.77642 1.19850 1.20922 1.17079 1.62044 1.10240 1.52506 1.01668 1.22016 0.87910 0.98467 1.01281 1.21145 1.00731 0.94027 0.88462 1.21737 0.99086 0.99946 0.93750 1.22928 0.97742 0.99421 0.97352 1.22178 0.97981 0.95051 0.99561 1.22612 0.96316 0.97461 1.00396 1.22173 0.97431 0.99383 0.94284 0.92718 0.93954 0.92950 0.92508 0.91406 0.97590 0.93070 0.95737 0.89585 0.86573 0.92851 0.88013 0.88954 0.90550 0.87708 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.76 71.98 0.63 -4.78 16 2 C 0.18 8.47 1.70 44.17 0.08 8.55 16 3 H 0.00 -0.22 5.36 -2.39 -0.01 -0.24 16 4 C -0.50 -28.64 7.39 25.60 0.19 -28.45 16 5 H 0.04 2.32 8.05 -2.91 -0.02 2.30 16 6 C 0.02 0.90 5.47 84.65 0.46 1.36 16 7 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 8 Si 0.93 44.54 26.95 68.60 1.85 46.38 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.25 -10.94 6.88 99.48 0.68 -10.25 16 12 N -0.54 -23.01 4.61 -906.02 -4.18 -27.19 16 13 C 0.05 2.16 9.10 127.69 1.16 3.33 16 14 C 0.08 2.87 5.22 85.55 0.45 3.32 16 15 C -0.13 -3.75 8.62 25.65 0.22 -3.53 16 16 C -0.17 -4.35 6.89 -16.04 -0.11 -4.46 16 17 C -0.11 -2.41 7.38 30.06 0.22 -2.19 16 18 C -0.13 -2.33 8.17 30.95 0.25 -2.08 16 19 C -0.10 -1.81 7.96 30.16 0.24 -1.57 16 20 H 0.05 1.92 6.57 -2.39 -0.02 1.91 16 21 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 22 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 24 H 0.07 2.48 7.28 -2.39 -0.02 2.47 16 25 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.05 2.45 6.82 -2.39 -0.02 2.44 16 27 H 0.02 0.84 7.26 -2.38 -0.02 0.83 16 28 H 0.09 2.82 5.97 -2.39 -0.01 2.81 16 29 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.05 1.32 7.96 -2.39 -0.02 1.30 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.14 280.04 2.77 -61.37 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.01 Total: 8.82 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 3.79 Total: -30.50 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -3.88 Total: -86.07 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.85 Total: 46.38 kcal Total: -64.14 2.77 -61.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.452 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds