Wall clock time and date at job start Mon Mar 30 2020 02:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47593 * 2 1 4 4 C 1.50702 * 109.47204 * 239.99409 * 2 1 3 5 5 H 1.07995 * 119.99910 * 245.46319 * 4 2 1 6 6 C 1.37876 * 119.99834 * 65.46884 * 4 2 1 7 7 N 1.31514 * 119.99783 * 9.53934 * 6 4 2 8 8 Si 1.86802 * 120.00186 * 189.54324 * 6 4 2 9 9 H 1.48502 * 109.47066 * 84.98898 * 8 6 4 10 10 H 1.48494 * 109.47134 * 204.98989 * 8 6 4 11 11 H 1.48498 * 109.46877 * 324.99584 * 8 6 4 12 12 N 1.46905 * 109.46674 * 120.00092 * 2 1 3 13 13 C 1.46904 * 110.99849 * 274.99708 * 12 2 1 14 14 C 1.50690 * 109.47377 * 180.02562 * 13 12 2 15 15 C 1.29440 * 117.96388 * 95.00093 * 14 13 12 16 16 C 1.50073 * 124.07698 * 180.75625 * 15 14 13 17 17 C 1.53181 * 110.05938 * 342.43081 * 16 15 14 18 18 C 1.53390 * 108.30043 * 49.78027 * 17 16 15 19 19 C 1.50073 * 117.96540 * 275.02421 * 14 13 12 20 20 H 1.08997 * 109.47117 * 183.75724 * 1 2 3 21 21 H 1.08998 * 109.47253 * 303.76577 * 1 2 3 22 22 H 1.09002 * 109.46473 * 63.75992 * 1 2 3 23 23 H 0.97005 * 119.99857 * 180.02562 * 7 6 4 24 24 H 1.00900 * 111.00003 * 151.04917 * 12 2 1 25 25 H 1.09005 * 109.47115 * 60.00059 * 13 12 2 26 26 H 1.09000 * 109.47137 * 300.00659 * 13 12 2 27 27 H 1.08004 * 117.96202 * 0.46631 * 15 14 13 28 28 H 1.08996 * 109.35988 * 102.81379 * 16 15 14 29 29 H 1.09005 * 109.35322 * 222.40075 * 16 15 14 30 30 H 1.09005 * 109.84007 * 290.05845 * 17 16 15 31 31 H 1.08997 * 109.75454 * 169.45136 * 17 16 15 32 32 H 1.08999 * 109.64174 * 172.72401 * 18 17 16 33 33 H 1.08997 * 109.63902 * 52.09062 * 18 17 16 34 34 H 1.09001 * 109.35456 * 283.05773 * 19 14 13 35 35 H 1.09004 * 109.35365 * 42.77439 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6372 -1.1336 6 6 1.7947 -0.1775 -2.4796 7 7 1.2992 1.0354 -2.5935 8 14 2.1765 -1.1781 -4.0101 9 1 1.0247 -2.0613 -4.3242 10 1 2.4232 -0.2614 -5.1520 11 1 3.3850 -2.0072 -3.7707 12 7 2.0196 -0.6926 1.1995 13 6 2.0824 0.2226 2.3470 14 6 2.5883 -0.5214 3.5558 15 6 3.8543 -0.4625 3.8189 16 6 4.5063 -1.1624 4.9753 17 6 3.4498 -1.5666 6.0081 18 6 2.3143 -2.2934 5.2765 19 6 1.5931 -1.2851 4.3795 20 1 -0.3633 -1.0254 0.0673 21 1 -0.3633 0.5712 0.8543 22 1 -0.3632 0.4544 -0.9218 23 1 1.1317 1.4103 -3.4724 24 1 2.9172 -1.1205 1.0289 25 1 1.0869 0.6164 2.5525 26 1 2.7587 1.0462 2.1183 27 1 4.4811 0.1231 3.1627 28 1 5.0227 -2.0519 4.6146 29 1 5.2281 -0.4924 5.4425 30 1 3.0573 -0.6782 6.5030 31 1 3.8939 -2.2322 6.7483 32 1 1.6136 -2.7039 6.0036 33 1 2.7268 -3.0970 4.6665 34 1 1.0278 -0.5894 4.9997 35 1 0.9093 -1.8172 3.7182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379753613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:03 Heat of formation + Delta-G solvation = -11.723624 kcal Electronic energy + Delta-G solvation = -13758.374126 eV Core-core repulsion = 11562.290215 eV Total energy + Delta-G solvation = -2196.083911 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.53882 -35.69397 -32.89993 -31.03966 -30.51342 -28.04473 -25.28440 -24.06879 -22.90594 -21.16216 -19.74330 -17.36226 -16.56102 -15.36050 -14.76113 -14.33404 -14.08398 -13.68486 -13.43218 -13.24287 -12.57968 -12.25883 -12.09609 -11.88915 -11.58102 -11.23481 -10.87142 -10.72416 -10.68224 -10.43204 -10.28409 -10.19538 -10.04980 -9.70210 -8.89433 -8.46451 -8.41699 -7.21036 -6.04435 -4.06461 2.57900 3.31748 3.37704 3.40648 4.42707 4.87684 4.90955 5.02138 5.29501 5.42316 5.44678 5.60084 5.67246 5.72131 5.77717 5.89471 6.00364 6.10972 6.18066 6.31959 6.35179 6.45311 6.45941 6.84348 6.97021 7.11262 7.19441 7.37876 7.44433 7.80595 7.87744 8.19617 8.40022 8.71666 9.05098 9.58439 11.04845 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052312 B = 0.006374 C = 0.006147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.124059 B = 4391.778618 C = 4554.124371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.208 3.792 3 H 0.007 0.993 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.088 3.912 14 C -0.096 4.096 15 C -0.175 4.175 16 C -0.083 4.083 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.080 4.080 20 H 0.034 0.966 21 H 0.008 0.992 22 H 0.062 0.938 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -3.398 13.637 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 H 0.025 0.975 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.314 5.314 13 C -0.041 4.041 14 C -0.097 4.097 15 C -0.194 4.194 16 C -0.120 4.120 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.117 4.117 20 H 0.053 0.947 21 H 0.027 0.973 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.291 -3.489 13.642 14.266 hybrid contribution 0.930 0.170 -1.259 1.574 sum 3.221 -3.319 12.383 13.219 Atomic orbital electron populations 1.21639 0.98316 0.98777 0.98916 1.19128 0.92140 0.92923 0.85734 0.97490 1.21225 1.35901 1.08151 0.90614 0.92206 1.24924 0.95255 0.94621 0.99046 1.69978 1.44998 1.13985 1.23799 0.86587 0.78753 0.80046 0.82467 1.20487 1.21383 1.19980 1.60729 1.32237 1.32854 1.05563 1.21061 0.99705 0.93422 0.89960 1.20950 0.94623 0.97805 0.96314 1.21845 0.95583 1.02627 0.99335 1.20382 0.97479 0.99587 0.94578 1.21623 0.96568 1.00113 0.97394 1.21602 0.97409 0.98225 0.98411 1.20348 0.97133 0.97078 0.97106 0.94689 0.97308 0.91915 0.92919 0.85140 0.91576 0.95941 0.88323 0.91349 0.91827 0.92042 0.92295 0.92174 0.91730 0.91563 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.27 37.16 0.34 -2.61 16 2 C 0.21 5.40 2.47 -68.86 -0.17 5.23 16 3 H 0.01 0.21 7.74 -51.93 -0.40 -0.19 16 4 C -0.52 -14.56 8.48 -34.44 -0.29 -14.85 16 5 H 0.06 1.66 7.69 -52.49 -0.40 1.25 16 6 C 0.06 1.79 5.17 -17.82 -0.09 1.70 16 7 N -0.89 -25.95 12.16 55.43 0.67 -25.27 16 8 Si 0.89 21.54 29.55 -169.99 -5.02 16.52 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.68 -15.05 6.29 -109.22 -0.69 -15.74 16 13 C 0.09 1.67 5.49 -4.98 -0.03 1.64 16 14 C -0.10 -1.53 5.35 -100.94 -0.54 -2.07 16 15 C -0.17 -2.56 9.37 -35.90 -0.34 -2.89 16 16 C -0.08 -0.99 6.12 -28.09 -0.17 -1.16 16 17 C -0.12 -1.29 6.02 -26.44 -0.16 -1.45 16 18 C -0.12 -1.40 6.01 -26.52 -0.16 -1.56 16 19 C -0.08 -1.11 5.80 -28.18 -0.16 -1.27 16 20 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 21 H 0.01 0.18 7.55 -51.93 -0.39 -0.21 16 22 H 0.06 1.69 6.83 -51.93 -0.35 1.33 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.33 7.30 8.25 -39.29 -0.32 6.98 16 25 H 0.07 1.27 7.48 -51.93 -0.39 0.88 16 26 H 0.02 0.44 7.71 -51.93 -0.40 0.04 16 27 H 0.10 1.49 7.74 -52.48 -0.41 1.09 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 281.39 15.07 4.24 4.24 Total: -1.00 -28.57 281.39 -8.57 -37.14 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.01 Total: 2.41 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.77 Total: -19.30 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.01 Total: -41.01 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.57 -8.57 -37.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379753613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.413 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds