Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 115.55575 * 2 1 4 4 C 1.52997 * 117.49288 * 145.68752 * 2 1 3 5 5 C 1.53001 * 60.03105 * 107.50143 * 4 2 1 6 6 H 1.08999 * 117.49690 * 252.46747 * 5 4 2 7 7 C 1.53001 * 117.49913 * 107.47432 * 5 4 2 8 8 N 1.46898 * 109.47325 * 116.39064 * 7 5 4 9 9 C 1.46899 * 111.00095 * 189.99999 * 8 7 5 10 10 C 1.50703 * 109.47035 * 162.92750 * 9 8 7 11 11 H 1.07994 * 119.99978 * 4.65184 * 10 9 8 12 12 C 1.37880 * 119.99796 * 184.65240 * 10 9 8 13 13 N 1.31513 * 120.00003 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99659 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47574 * 60.00003 * 14 12 10 16 16 H 1.48501 * 109.46876 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47403 * 299.99750 * 14 12 10 18 18 C 1.46898 * 110.99925 * 66.04682 * 8 7 5 19 19 C 1.53000 * 117.50115 * 127.21041 * 18 8 7 20 20 C 1.52999 * 59.99984 * 252.50767 * 19 18 8 21 21 H 1.09000 * 109.47274 * 325.70417 * 1 2 3 22 22 H 1.09005 * 109.46744 * 85.70312 * 1 2 3 23 23 H 1.08997 * 109.47097 * 205.69647 * 1 2 3 24 24 H 1.08998 * 117.50198 * 0.02562 * 4 2 1 25 25 H 1.09001 * 117.49140 * 215.00051 * 4 2 1 26 26 H 1.08998 * 109.47077 * 236.39244 * 7 5 4 27 27 H 1.09001 * 109.47103 * 356.39097 * 7 5 4 28 28 H 1.08998 * 109.46929 * 282.92790 * 9 8 7 29 29 H 1.09002 * 109.47256 * 42.92431 * 9 8 7 30 30 H 0.96998 * 119.99738 * 180.02562 * 13 12 10 31 31 H 1.09008 * 115.54548 * 272.92037 * 18 8 7 32 32 H 1.08996 * 117.49501 * 359.97438 * 19 18 8 33 33 H 1.08994 * 117.49910 * 145.02003 * 19 18 8 34 34 H 1.09000 * 117.49948 * 252.50604 * 20 19 18 35 35 H 1.09001 * 117.51878 * 107.47412 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2372 -1.1216 -0.7650 6 1 1.6127 -1.8598 -1.2682 7 6 3.5500 -0.7764 -1.4709 8 7 4.0113 -1.9383 -2.2424 9 6 5.3779 -1.7310 -2.7397 10 6 5.9699 -3.0552 -3.1488 11 1 5.3646 -3.9491 -3.1203 12 6 7.2842 -3.1254 -3.5594 13 7 8.0212 -2.0367 -3.5945 14 14 8.0181 -4.7668 -4.0657 15 1 7.2538 -5.3179 -5.2135 16 1 9.4363 -4.5739 -4.4616 17 1 7.9479 -5.7137 -2.9239 18 6 3.0891 -2.2372 -3.3461 19 6 3.6837 -2.3572 -4.7507 20 6 2.8419 -1.1352 -4.3782 21 1 -0.3634 0.8490 0.5790 22 1 -0.3633 0.0770 -1.0248 23 1 -0.3633 -0.9260 0.4456 24 1 1.6111 -1.8587 1.2680 25 1 3.1713 -0.8750 1.2686 26 1 3.3901 0.0662 -2.1436 27 1 4.3028 -0.5110 -0.7286 28 1 5.3539 -1.0624 -3.6002 29 1 5.9879 -1.2880 -1.9524 30 1 8.9457 -2.0860 -3.8838 31 1 2.2523 -2.8894 -3.0959 32 1 4.7591 -2.2140 -4.8558 33 1 3.2383 -3.0887 -5.4249 34 1 1.8426 -1.0626 -4.8075 35 1 3.3632 -0.1883 -4.2380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388595408.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = 34.642830 kcal Electronic energy + Delta-G solvation = -13989.122733 eV Core-core repulsion = 11795.049423 eV Total energy + Delta-G solvation = -2194.073310 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.17606 -38.32488 -35.00306 -33.85512 -30.35107 -28.82551 -26.17638 -24.68316 -23.05145 -22.19258 -21.22711 -20.13122 -18.38247 -17.54470 -16.69183 -16.16022 -15.86896 -15.13801 -14.64978 -14.37719 -14.01937 -13.81285 -13.39916 -13.16579 -12.95118 -12.70279 -12.63563 -12.26639 -12.13993 -11.98582 -11.75956 -11.46512 -11.31373 -10.87950 -10.71814 -10.62089 -10.46235 -8.91317 -8.16211 -6.23550 1.42034 1.44872 1.52593 2.42166 2.84198 3.07586 3.15182 3.34403 3.82755 4.01649 4.11708 4.17670 4.19227 4.23264 4.48143 4.55904 4.72420 4.75693 4.84177 4.98039 5.00429 5.02993 5.07458 5.09299 5.20174 5.24584 5.31346 5.38464 5.52333 5.60140 5.70509 6.09895 6.42879 6.65868 6.89655 7.43266 8.94047 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043278 B = 0.007649 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.822764 B = 3659.604015 C = 3935.949060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.147 4.147 3 H 0.099 0.901 4 C -0.172 4.172 5 C -0.143 4.143 6 H 0.105 0.895 7 C 0.091 3.909 8 N -0.515 5.515 9 C 0.205 3.795 10 C -0.500 4.500 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.938 5.938 14 Si 0.964 3.036 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.031 3.969 19 C -0.188 4.188 20 C -0.204 4.204 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.025 0.975 27 H 0.051 0.949 28 H -0.027 1.027 29 H -0.005 1.005 30 H 0.263 0.737 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 2.168 3.684 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.165 4.165 3 H 0.117 0.883 4 C -0.209 4.209 5 C -0.161 4.161 6 H 0.123 0.877 7 C -0.037 4.037 8 N -0.237 5.237 9 C 0.079 3.921 10 C -0.539 4.539 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.579 5.579 14 Si 0.789 3.211 15 H -0.191 1.191 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.078 4.078 19 C -0.225 4.225 20 C -0.243 4.243 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.043 0.957 27 H 0.070 0.930 28 H -0.009 1.009 29 H 0.013 0.987 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.422 1.820 3.981 14.118 hybrid contribution 1.114 0.165 -0.834 1.401 sum -12.308 1.986 3.147 12.858 Atomic orbital electron populations 1.21343 0.91227 1.02561 1.02173 1.22500 0.96292 0.94033 1.03716 0.88281 1.23202 1.02374 1.01646 0.93712 1.22200 0.97388 1.02364 0.94164 0.87704 1.21614 0.95243 0.91091 0.95748 1.62043 1.02140 1.37179 1.22379 1.19465 0.84607 0.95751 0.92285 1.21287 0.95987 0.94489 1.42113 0.92197 1.25837 0.97488 1.00178 0.96155 1.70079 1.08619 1.29801 1.49370 0.85506 0.77077 0.79551 0.78926 1.19129 1.21084 1.19631 1.22674 0.98070 1.01166 0.85892 1.23371 1.00608 1.00447 0.98046 1.23287 1.01603 0.93250 1.06136 0.91003 0.92091 0.92106 0.87806 0.89734 0.95687 0.93027 1.00901 0.98661 0.92860 0.85604 0.89248 0.87817 0.86550 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 10.19 71.99 0.73 -1.39 16 2 C -0.15 -3.48 6.13 -10.77 -0.07 -3.55 16 3 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.17 -4.47 9.82 30.59 0.30 -4.17 16 5 C -0.14 -4.25 5.43 -10.77 -0.06 -4.31 16 6 H 0.10 3.11 7.07 -2.39 -0.02 3.09 16 7 C 0.09 3.42 5.13 86.30 0.44 3.87 16 8 N -0.51 -22.82 4.67 -875.52 -4.09 -26.91 16 9 C 0.21 11.07 4.27 85.56 0.37 11.43 16 10 C -0.50 -28.39 6.86 25.60 0.18 -28.22 16 11 H 0.06 3.38 7.80 -2.91 -0.02 3.36 16 12 C 0.00 0.04 5.46 84.66 0.46 0.51 16 13 N -0.94 -56.92 13.29 21.45 0.28 -56.64 16 14 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 C 0.03 1.19 5.19 44.92 0.23 1.42 16 19 C -0.19 -7.50 8.87 30.59 0.27 -7.23 16 20 C -0.20 -7.06 9.27 30.59 0.28 -6.77 16 21 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.06 1.04 7.90 -2.39 -0.02 1.02 16 24 H 0.10 2.36 8.05 -2.39 -0.02 2.34 16 25 H 0.08 2.30 8.03 -2.39 -0.02 2.28 16 26 H 0.03 0.95 6.84 -2.39 -0.02 0.93 16 27 H 0.05 2.05 7.58 -2.39 -0.02 2.04 16 28 H -0.03 -1.53 6.03 -2.39 -0.01 -1.54 16 29 H 0.00 -0.28 7.79 -2.39 -0.02 -0.30 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.13 4.25 7.72 -2.38 -0.02 4.23 16 32 H 0.09 4.43 4.91 -2.39 -0.01 4.42 16 33 H 0.10 3.57 8.14 -2.39 -0.02 3.56 16 34 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.07 2.57 7.14 -2.39 -0.02 2.55 16 Total: -1.00 -62.57 281.31 2.41 -60.17 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.04 Total: 14.97 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.14 Total: -38.41 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.81 Total: -83.55 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.57 2.41 -60.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388595408.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.811 kcal (2) G-P(sol) polarization free energy of solvation -62.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds