Wall clock time and date at job start Mon Mar 30 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 115.54900 * 2 1 4 4 C 1.52999 * 117.49538 * 214.29575 * 2 1 3 5 5 C 1.52994 * 117.50074 * 145.67181 * 2 1 3 6 6 H 1.09004 * 117.49736 * 359.97254 * 5 2 1 7 7 C 1.52995 * 117.50100 * 214.98130 * 5 2 1 8 8 N 1.46899 * 109.47570 * 175.00049 * 7 5 2 9 9 C 1.46897 * 111.00271 * 189.99663 * 8 7 5 10 10 C 1.50700 * 109.47135 * 158.82668 * 9 8 7 11 11 H 1.08002 * 119.99727 * 354.53780 * 10 9 8 12 12 C 1.37881 * 120.00100 * 174.52954 * 10 9 8 13 13 N 1.31515 * 119.99657 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46892 * 60.00582 * 14 12 10 16 16 H 1.48499 * 109.46863 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47016 * 299.99988 * 14 12 10 18 18 C 1.46909 * 110.99865 * 66.04015 * 8 7 5 19 19 C 1.52998 * 117.50017 * 264.78152 * 18 8 7 20 20 C 1.52999 * 117.49644 * 196.12307 * 18 8 7 21 21 H 1.09005 * 109.47022 * 274.32860 * 1 2 3 22 22 H 1.09001 * 109.47175 * 34.32431 * 1 2 3 23 23 H 1.08994 * 109.47471 * 154.33130 * 1 2 3 24 24 H 1.08997 * 117.49896 * 145.02223 * 4 2 1 25 25 H 1.08994 * 117.49978 * 359.97438 * 4 2 1 26 26 H 1.08994 * 109.47716 * 54.99364 * 7 5 2 27 27 H 1.09011 * 109.46946 * 294.99635 * 7 5 2 28 28 H 1.09005 * 109.46989 * 278.82673 * 9 8 7 29 29 H 1.08998 * 109.47170 * 38.83014 * 9 8 7 30 30 H 0.96999 * 119.99552 * 179.97438 * 13 12 10 31 31 H 1.08994 * 115.54770 * 50.45512 * 18 8 7 32 32 H 1.09010 * 117.49580 * 0.02562 * 19 18 8 33 33 H 1.08998 * 117.49836 * 145.02450 * 19 18 8 34 34 H 1.09000 * 117.49629 * 214.98340 * 20 18 8 35 35 H 1.09005 * 117.49815 * 359.97393 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9835 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 1.6113 -1.8578 1.2692 7 6 3.5490 -0.7754 1.4716 8 7 4.0099 -1.9370 2.2439 9 6 5.1320 -1.5751 3.1201 10 6 5.2419 -2.5809 4.2369 11 1 4.4961 -3.3550 4.3418 12 6 6.2947 -2.5130 5.1247 13 7 7.2032 -1.5708 4.9965 14 14 6.4313 -3.7603 6.5086 15 1 6.5330 -5.1264 5.9354 16 1 7.6425 -3.4711 7.3177 17 1 5.2270 -3.6744 7.3730 18 6 4.3730 -3.0493 1.3556 19 6 3.3091 -4.1156 1.0874 20 6 4.5084 -4.4385 1.9822 21 1 -0.3633 0.0776 1.0248 22 1 -0.3633 0.8487 -0.5795 23 1 -0.3634 -0.9262 -0.4451 24 1 3.1715 -0.8756 -1.2681 25 1 1.6112 -1.8590 -1.2674 26 1 3.3891 0.0675 2.1438 27 1 4.3023 -0.5105 0.7295 28 1 6.0567 -1.5703 2.5430 29 1 4.9603 -0.5838 3.5396 30 1 7.9436 -1.5228 5.6213 31 1 5.0499 -2.7972 0.5393 32 1 2.3395 -3.9916 1.5698 33 1 3.2863 -4.5653 0.0948 34 1 5.2741 -5.1005 1.5778 35 1 4.3284 -4.5271 3.0536 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388595410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:44 Heat of formation + Delta-G solvation = 47.610633 kcal Electronic energy + Delta-G solvation = -13953.958832 eV Core-core repulsion = 11760.447848 eV Total energy + Delta-G solvation = -2193.510984 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.37698 -36.67736 -33.47774 -32.21226 -28.95987 -27.09375 -24.63527 -22.18419 -21.55917 -20.86412 -19.91499 -19.39702 -16.51279 -15.17953 -14.70273 -14.57598 -14.37049 -13.99767 -13.30873 -12.89326 -12.54567 -12.27275 -11.99375 -11.66432 -11.30974 -11.17571 -11.02282 -10.76919 -10.61512 -10.57912 -10.03015 -9.73907 -9.58374 -9.31780 -9.11507 -8.99678 -8.35456 -7.24337 -5.96681 -3.96582 3.36309 3.40224 3.42959 4.02735 4.44614 4.65828 4.72494 5.02589 5.14959 5.26935 5.38131 5.43850 5.72022 5.80725 5.84482 5.85900 5.88277 6.03892 6.08896 6.10149 6.20124 6.27102 6.34646 6.42158 6.49693 6.70813 6.75583 7.05456 7.27180 7.42821 7.90532 8.17874 8.27779 8.60931 9.09823 9.66103 11.13991 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.042606 B = 0.007657 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.019212 B = 3655.786588 C = 3947.934421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.164 4.164 3 H 0.098 0.902 4 C -0.178 4.178 5 C -0.123 4.123 6 H 0.109 0.891 7 C 0.089 3.911 8 N -0.509 5.509 9 C 0.195 3.805 10 C -0.496 4.496 11 H 0.066 0.934 12 C 0.053 3.947 13 N -0.902 5.902 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.033 3.967 19 C -0.180 4.180 20 C -0.158 4.158 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.022 0.978 28 H -0.003 1.003 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 -0.107 -9.337 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.183 4.183 3 H 0.116 0.884 4 C -0.215 4.215 5 C -0.142 4.142 6 H 0.127 0.873 7 C -0.040 4.040 8 N -0.234 5.234 9 C 0.070 3.930 10 C -0.534 4.534 11 H 0.084 0.916 12 C -0.148 4.148 13 N -0.542 5.542 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.076 4.076 19 C -0.218 4.218 20 C -0.195 4.195 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.015 0.985 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.232 -0.184 -8.939 12.852 hybrid contribution 0.983 -0.287 0.206 1.044 sum -8.250 -0.471 -8.733 12.023 Atomic orbital electron populations 1.21315 0.93278 1.01304 1.01637 1.22369 0.94883 0.94755 1.06246 0.88360 1.23118 1.01971 1.01079 0.95358 1.22440 0.98934 1.00284 0.92522 0.87333 1.21596 0.92920 0.93972 0.95473 1.61886 1.38561 1.04895 1.18039 1.19711 0.85948 0.96582 0.90746 1.21178 1.08412 1.13311 1.10543 0.91607 1.24987 0.95788 0.95972 0.98029 1.69951 1.13335 1.33273 1.37666 0.86610 0.77302 0.81693 0.82110 1.20249 1.21467 1.20265 1.21986 0.99631 0.88836 0.97187 1.22969 0.95025 1.04101 0.99727 1.23053 0.98578 0.97126 1.00714 0.92288 0.92732 0.92852 0.89535 0.89443 0.91072 0.96024 0.98491 0.95833 0.93012 0.91706 0.89192 0.90434 0.90284 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.19 37.16 0.38 -0.91 16 2 C -0.16 -2.11 6.13 -90.62 -0.56 -2.67 16 3 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.18 -2.36 9.82 -26.73 -0.26 -2.62 16 5 C -0.12 -1.90 4.52 -90.62 -0.41 -2.31 16 6 H 0.11 1.77 7.56 -51.93 -0.39 1.38 16 7 C 0.09 1.65 5.22 -3.83 -0.02 1.63 16 8 N -0.51 -11.11 4.55 -228.08 -1.04 -12.15 16 9 C 0.19 5.12 4.78 -4.98 -0.02 5.09 16 10 C -0.50 -13.84 7.98 -34.44 -0.27 -14.11 16 11 H 0.07 1.81 5.87 -52.49 -0.31 1.50 16 12 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 13 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.03 0.66 4.43 -67.71 -0.30 0.36 16 19 C -0.18 -3.04 9.70 -26.70 -0.26 -3.30 16 20 C -0.16 -3.07 9.51 -26.69 -0.25 -3.32 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 24 H 0.09 1.15 8.03 -51.93 -0.42 0.73 16 25 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 26 H 0.07 1.34 7.82 -51.93 -0.41 0.94 16 27 H 0.02 0.40 7.86 -51.92 -0.41 -0.01 16 28 H 0.00 -0.08 7.98 -51.93 -0.41 -0.50 16 29 H 0.02 0.66 7.71 -51.93 -0.40 0.26 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.52 7.71 -51.92 -0.40 1.12 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.11 2.46 5.72 -51.93 -0.30 2.16 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -28.95 285.78 -9.04 -37.99 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.94 Total: 0.16 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -2.08 Total: -20.76 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.30 Total: -38.40 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.95 -9.04 -37.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388595410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.597 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds