Wall clock time and date at job start Mon Mar 30 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 115.54900 * 2 1 4 4 C 1.52999 * 117.49538 * 214.29575 * 2 1 3 5 5 C 1.52994 * 117.50074 * 145.67181 * 2 1 3 6 6 H 1.09004 * 117.49736 * 359.97254 * 5 2 1 7 7 C 1.52995 * 117.50100 * 214.98130 * 5 2 1 8 8 N 1.46899 * 109.47570 * 175.00049 * 7 5 2 9 9 C 1.46897 * 111.00271 * 189.99663 * 8 7 5 10 10 C 1.50700 * 109.47135 * 158.82668 * 9 8 7 11 11 H 1.08002 * 119.99727 * 354.53780 * 10 9 8 12 12 C 1.37881 * 120.00100 * 174.52954 * 10 9 8 13 13 N 1.31515 * 119.99657 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46892 * 60.00582 * 14 12 10 16 16 H 1.48499 * 109.46863 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47016 * 299.99988 * 14 12 10 18 18 C 1.46909 * 110.99865 * 66.04015 * 8 7 5 19 19 C 1.52998 * 117.50017 * 264.78152 * 18 8 7 20 20 C 1.52999 * 117.49644 * 196.12307 * 18 8 7 21 21 H 1.09005 * 109.47022 * 274.32860 * 1 2 3 22 22 H 1.09001 * 109.47175 * 34.32431 * 1 2 3 23 23 H 1.08994 * 109.47471 * 154.33130 * 1 2 3 24 24 H 1.08997 * 117.49896 * 145.02223 * 4 2 1 25 25 H 1.08994 * 117.49978 * 359.97438 * 4 2 1 26 26 H 1.08994 * 109.47716 * 54.99364 * 7 5 2 27 27 H 1.09011 * 109.46946 * 294.99635 * 7 5 2 28 28 H 1.09005 * 109.46989 * 278.82673 * 9 8 7 29 29 H 1.08998 * 109.47170 * 38.83014 * 9 8 7 30 30 H 0.96999 * 119.99552 * 179.97438 * 13 12 10 31 31 H 1.08994 * 115.54770 * 50.45512 * 18 8 7 32 32 H 1.09010 * 117.49580 * 0.02562 * 19 18 8 33 33 H 1.08998 * 117.49836 * 145.02450 * 19 18 8 34 34 H 1.09000 * 117.49629 * 214.98340 * 20 18 8 35 35 H 1.09005 * 117.49815 * 359.97393 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9835 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 1.6113 -1.8578 1.2692 7 6 3.5490 -0.7754 1.4716 8 7 4.0099 -1.9370 2.2439 9 6 5.1320 -1.5751 3.1201 10 6 5.2419 -2.5809 4.2369 11 1 4.4961 -3.3550 4.3418 12 6 6.2947 -2.5130 5.1247 13 7 7.2032 -1.5708 4.9965 14 14 6.4313 -3.7603 6.5086 15 1 6.5330 -5.1264 5.9354 16 1 7.6425 -3.4711 7.3177 17 1 5.2270 -3.6744 7.3730 18 6 4.3730 -3.0493 1.3556 19 6 3.3091 -4.1156 1.0874 20 6 4.5084 -4.4385 1.9822 21 1 -0.3633 0.0776 1.0248 22 1 -0.3633 0.8487 -0.5795 23 1 -0.3634 -0.9262 -0.4451 24 1 3.1715 -0.8756 -1.2681 25 1 1.6112 -1.8590 -1.2674 26 1 3.3891 0.0675 2.1438 27 1 4.3023 -0.5105 0.7295 28 1 6.0567 -1.5703 2.5430 29 1 4.9603 -0.5838 3.5396 30 1 7.9436 -1.5228 5.6213 31 1 5.0499 -2.7972 0.5393 32 1 2.3395 -3.9916 1.5698 33 1 3.2863 -4.5653 0.0948 34 1 5.2741 -5.1005 1.5778 35 1 4.3284 -4.5271 3.0536 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388595410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:44 Heat of formation + Delta-G solvation = 31.027055 kcal Electronic energy + Delta-G solvation = -13954.677950 eV Core-core repulsion = 11760.447848 eV Total energy + Delta-G solvation = -2194.230102 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79525 -38.02562 -35.32631 -34.13940 -30.33406 -28.71820 -26.24634 -24.14893 -23.01648 -22.04677 -21.14258 -20.99003 -18.55873 -16.82147 -16.57089 -16.10873 -15.64978 -15.51733 -14.75789 -14.38683 -13.86356 -13.77026 -13.59948 -13.21384 -12.97224 -12.75282 -12.53227 -12.40294 -12.17411 -12.02242 -11.80661 -11.26761 -11.19912 -10.86453 -10.60112 -10.52043 -10.43781 -9.04170 -8.15519 -6.23843 1.41537 1.44705 1.52121 2.41926 2.90046 3.10087 3.16039 3.24449 3.84884 4.04444 4.12406 4.20978 4.30270 4.44967 4.49573 4.60888 4.66294 4.84515 4.91536 4.94792 4.95535 5.01859 5.03706 5.13277 5.19440 5.25071 5.36902 5.38945 5.49411 5.54957 5.76447 6.11499 6.44455 6.67008 6.91204 7.44221 8.95137 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.042606 B = 0.007657 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.019212 B = 3655.786588 C = 3947.934421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.152 4.152 3 H 0.098 0.902 4 C -0.164 4.164 5 C -0.140 4.140 6 H 0.103 0.897 7 C 0.090 3.910 8 N -0.513 5.513 9 C 0.209 3.791 10 C -0.505 4.505 11 H 0.068 0.932 12 C -0.002 4.002 13 N -0.940 5.940 14 Si 0.965 3.035 15 H -0.266 1.266 16 H -0.286 1.286 17 H -0.269 1.269 18 C 0.008 3.992 19 C -0.136 4.136 20 C -0.173 4.173 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.017 0.983 28 H -0.037 1.037 29 H -0.004 1.004 30 H 0.262 0.738 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.676 -1.372 -10.305 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.171 4.171 3 H 0.116 0.884 4 C -0.201 4.201 5 C -0.158 4.158 6 H 0.121 0.879 7 C -0.038 4.038 8 N -0.237 5.237 9 C 0.083 3.917 10 C -0.543 4.543 11 H 0.086 0.914 12 C -0.199 4.199 13 N -0.581 5.581 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.211 1.211 17 H -0.194 1.194 18 C -0.101 4.101 19 C -0.174 4.174 20 C -0.210 4.210 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.075 0.925 27 H 0.035 0.965 28 H -0.019 1.019 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.903 -1.453 -9.926 14.816 hybrid contribution 1.487 0.155 0.454 1.563 sum -9.416 -1.298 -9.472 13.419 Atomic orbital electron populations 1.21335 0.91424 1.02600 1.01974 1.22492 0.96259 0.94201 1.04097 0.88380 1.23179 1.02218 1.01367 0.93329 1.22161 0.97446 1.02367 0.93857 0.87927 1.21607 0.94655 0.92571 0.94941 1.61836 1.36150 1.06564 1.19178 1.19370 0.86177 0.95056 0.91078 1.21466 1.08495 1.13428 1.10945 0.91361 1.25898 0.95368 0.97928 1.00688 1.70093 1.14020 1.35174 1.38842 0.85501 0.77449 0.79338 0.78757 1.19063 1.21125 1.19423 1.22075 1.02255 0.88509 0.97232 1.22990 0.93677 1.00170 1.00529 1.23029 1.01020 0.97137 0.99842 0.92521 0.91017 0.91936 0.89710 0.87521 0.92503 0.96496 1.01900 0.98563 0.92929 0.91955 0.88902 0.87014 0.88905 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 10.19 71.98 0.73 -1.47 16 2 C -0.15 -3.60 6.13 -10.79 -0.07 -3.66 16 3 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 4 C -0.16 -3.91 9.82 30.59 0.30 -3.61 16 5 C -0.14 -4.13 4.52 -10.80 -0.05 -4.18 16 6 H 0.10 3.18 7.56 -2.38 -0.02 3.16 16 7 C 0.09 3.42 5.22 86.30 0.45 3.87 16 8 N -0.51 -22.89 4.55 -875.52 -3.99 -26.88 16 9 C 0.21 11.51 4.78 85.56 0.41 11.92 16 10 C -0.51 -28.88 7.98 25.60 0.20 -28.67 16 11 H 0.07 3.81 5.87 -2.91 -0.02 3.79 16 12 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 13 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 14 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C 0.01 0.33 4.43 44.91 0.20 0.53 16 19 C -0.14 -4.24 9.70 30.62 0.30 -3.94 16 20 C -0.17 -6.59 9.51 30.62 0.29 -6.29 16 21 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 24 H 0.08 2.07 8.03 -2.39 -0.02 2.05 16 25 H 0.11 2.17 8.05 -2.39 -0.02 2.15 16 26 H 0.06 2.25 7.82 -2.39 -0.02 2.23 16 27 H 0.02 0.65 7.86 -2.38 -0.02 0.63 16 28 H -0.04 -2.23 7.98 -2.38 -0.02 -2.25 16 29 H 0.00 -0.22 7.71 -2.39 -0.02 -0.24 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.09 2.88 7.71 -2.38 -0.02 2.86 16 33 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.09 3.78 5.72 -2.38 -0.01 3.77 16 Total: -1.00 -63.47 285.78 2.59 -60.87 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.03 Total: 11.72 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 3.23 Total: -35.15 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -3.70 Total: -84.36 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.47 2.59 -60.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388595410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.902 kcal (2) G-P(sol) polarization free energy of solvation -63.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds