Wall clock time and date at job start Mon Mar 30 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.50701 * 109.47426 * 239.99740 * 2 1 3 5 5 H 1.07991 * 120.00370 * 245.26431 * 4 2 1 6 6 C 1.37880 * 119.99808 * 65.26029 * 4 2 1 7 7 N 1.31508 * 120.00070 * 185.07881 * 6 4 2 8 8 Si 1.86806 * 119.99844 * 5.35087 * 6 4 2 9 9 H 1.48494 * 109.47410 * 269.72590 * 8 6 4 10 10 H 1.48494 * 109.47147 * 29.72828 * 8 6 4 11 11 H 1.48503 * 109.46731 * 149.72652 * 8 6 4 12 12 N 1.46906 * 109.47463 * 119.99415 * 2 1 3 13 13 C 1.46901 * 110.99916 * 274.25594 * 12 2 1 14 14 C 1.53002 * 115.54395 * 156.02019 * 13 12 2 15 15 C 1.53005 * 115.54655 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.50151 * 34.32928 * 14 13 12 17 17 C 1.53000 * 117.50130 * 325.66872 * 14 13 12 18 18 C 1.52995 * 117.50032 * 10.31572 * 13 12 2 19 19 C 1.53000 * 117.50100 * 301.68902 * 13 12 2 20 20 H 1.09008 * 109.46994 * 294.07240 * 1 2 3 21 21 H 1.09004 * 109.47545 * 54.07244 * 1 2 3 22 22 H 1.08999 * 109.47418 * 174.07747 * 1 2 3 23 23 H 0.96998 * 119.99677 * 355.27047 * 7 6 4 24 24 H 1.00900 * 110.99639 * 38.21328 * 12 2 1 25 25 H 1.08994 * 109.47391 * 60.00118 * 15 14 13 26 26 H 1.09000 * 109.46602 * 180.02562 * 15 14 13 27 27 H 1.09003 * 109.46563 * 299.99465 * 15 14 13 28 28 H 1.08999 * 117.49552 * 0.02562 * 16 14 13 29 29 H 1.09003 * 117.49807 * 145.01406 * 16 14 13 30 30 H 1.09000 * 117.49613 * 214.98111 * 17 14 13 31 31 H 1.09000 * 117.49707 * 0.02562 * 17 14 13 32 32 H 1.09003 * 117.50210 * 359.97438 * 18 13 12 33 33 H 1.08997 * 117.49896 * 145.01888 * 18 13 12 34 34 H 1.09000 * 117.49451 * 214.98033 * 19 13 12 35 35 H 1.08998 * 117.49493 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5813 -1.6354 -1.1336 6 6 1.7910 -0.1796 -2.4798 7 7 2.1409 -0.8479 -3.5570 8 14 0.9739 1.4924 -2.6423 9 1 -0.4993 1.3189 -2.7110 10 1 1.3194 2.3287 -1.4648 11 1 1.4522 2.1588 -3.8802 12 7 2.0197 -0.6924 1.1995 13 6 2.0992 0.2270 2.3425 14 6 2.0317 -0.4291 3.7230 15 6 2.1139 0.5285 4.9135 16 6 2.6717 -1.8099 3.8811 17 6 1.1475 -1.6686 3.8736 18 6 1.4600 1.6080 2.1841 19 6 2.9834 1.4666 2.1919 20 1 -0.3633 0.4192 0.9384 21 1 -0.3634 0.6030 -0.8322 22 1 -0.3634 -1.0222 -0.1060 23 1 2.6298 -1.6814 -3.4731 24 1 1.4424 -1.4908 1.4171 25 1 1.2856 1.2356 4.8689 26 1 2.0572 -0.0401 5.8417 27 1 3.0581 1.0720 4.8779 28 1 3.1412 -2.2505 3.0016 29 1 3.1515 -2.0361 4.8333 30 1 0.6251 -1.8021 4.8209 31 1 0.6142 -2.0169 2.9890 32 1 0.9807 1.8346 1.2316 33 1 0.9910 2.0493 3.0635 34 1 3.5167 1.8148 3.0764 35 1 3.5058 1.6000 1.2445 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398225887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:51 Heat of formation + Delta-G solvation = 33.125348 kcal Electronic energy + Delta-G solvation = -14493.347487 eV Core-core repulsion = 12299.208374 eV Total energy + Delta-G solvation = -2194.139113 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.83238 -37.47819 -35.50976 -33.73344 -30.36767 -28.90924 -26.83260 -24.00162 -23.57051 -22.87864 -21.49909 -19.94976 -18.93706 -17.50562 -16.88484 -15.90573 -15.14899 -14.92049 -14.61142 -14.31994 -14.18227 -13.89836 -13.74258 -13.26736 -12.95544 -12.59137 -12.52157 -12.19577 -12.15816 -11.99591 -11.73280 -11.61423 -11.51306 -10.93824 -10.83149 -10.61327 -10.36212 -8.92028 -8.66061 -6.36730 1.37184 1.48230 1.64112 2.43994 2.62040 3.08281 3.22613 3.40682 3.62404 3.83430 4.04088 4.06131 4.26149 4.40320 4.48192 4.57955 4.64685 4.73140 4.74079 4.81212 4.90981 4.98271 5.04229 5.06639 5.10253 5.24037 5.30640 5.32913 5.42259 5.43908 5.83847 6.04186 6.38631 6.69206 6.73279 7.42814 8.65769 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.044780 B = 0.009770 C = 0.009005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.132874 B = 2865.092612 C = 3108.675983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.183 3.817 3 H 0.040 0.960 4 C -0.576 4.576 5 H 0.017 0.983 6 C -0.030 4.030 7 N -0.949 5.949 8 Si 1.093 2.907 9 H -0.262 1.262 10 H -0.255 1.255 11 H -0.291 1.291 12 N -0.652 5.652 13 C 0.082 3.918 14 C -0.095 4.095 15 C -0.107 4.107 16 C -0.168 4.168 17 C -0.173 4.173 18 C -0.215 4.215 19 C -0.174 4.174 20 H 0.063 0.937 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.250 0.750 24 H 0.334 0.666 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 4.726 18.012 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.074 3.926 3 H 0.057 0.943 4 C -0.615 4.615 5 H 0.035 0.965 6 C -0.226 4.226 7 N -0.587 5.587 8 Si 0.916 3.084 9 H -0.188 1.188 10 H -0.179 1.179 11 H -0.218 1.218 12 N -0.281 5.281 13 C -0.010 4.010 14 C -0.096 4.096 15 C -0.164 4.164 16 C -0.205 4.205 17 C -0.210 4.210 18 C -0.254 4.254 19 C -0.211 4.211 20 H 0.081 0.919 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.154 0.846 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.153 5.826 16.734 17.998 hybrid contribution 0.077 -1.643 0.376 1.687 sum -3.076 4.184 17.110 17.881 Atomic orbital electron populations 1.22738 0.99293 1.00921 1.00492 1.19563 0.90198 0.94830 0.88000 0.94250 1.22302 1.37304 1.08950 0.92945 0.96494 1.27169 0.97195 1.06495 0.91755 1.70930 1.39371 1.17019 1.31387 0.83412 0.76661 0.71923 0.76442 1.18763 1.17925 1.21818 1.60349 1.56368 1.09074 1.02315 1.21025 1.03659 0.86393 0.89954 1.20902 1.06016 0.89934 0.92752 1.21325 1.02470 0.98182 0.94413 1.23025 0.95548 0.98826 1.03103 1.23100 0.93481 1.01092 1.03289 1.23792 0.95816 1.02335 1.03487 1.23117 0.93427 1.02008 1.02597 0.91856 0.93760 0.93816 0.94136 0.84621 0.91436 0.90529 0.91674 0.90505 0.86871 0.86389 0.90457 0.89712 0.86612 0.86385 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.38 8.09 71.98 0.58 -6.80 16 2 C 0.18 8.71 1.58 44.17 0.07 8.78 16 3 H 0.04 1.92 3.69 -2.39 -0.01 1.91 16 4 C -0.58 -34.04 9.20 25.60 0.24 -33.80 16 5 H 0.02 1.11 8.04 -2.92 -0.02 1.09 16 6 C -0.03 -1.79 5.43 84.66 0.46 -1.33 16 7 N -0.95 -61.67 13.70 21.45 0.29 -61.38 16 8 Si 1.09 51.79 25.28 68.60 1.73 53.52 16 9 H -0.26 -11.40 6.82 99.48 0.68 -10.72 16 10 H -0.25 -10.87 6.35 99.48 0.63 -10.24 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 N -0.65 -27.49 5.97 -452.09 -2.70 -30.19 16 13 C 0.08 2.75 2.92 3.53 0.01 2.76 16 14 C -0.10 -2.47 2.51 -52.18 -0.13 -2.60 16 15 C -0.11 -2.02 8.74 71.98 0.63 -1.39 16 16 C -0.17 -4.30 9.65 30.62 0.30 -4.00 16 17 C -0.17 -4.16 9.56 30.62 0.29 -3.87 16 18 C -0.22 -6.69 8.03 30.59 0.25 -6.44 16 19 C -0.17 -5.66 9.29 30.60 0.28 -5.37 16 20 H 0.06 2.25 6.55 -2.38 -0.02 2.24 16 21 H 0.04 1.86 4.42 -2.39 -0.01 1.85 16 22 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.25 16.54 8.72 -92.71 -0.81 15.73 16 24 H 0.33 13.54 6.21 -89.69 -0.56 12.98 16 25 H 0.07 1.19 6.90 -2.39 -0.02 1.17 16 26 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 27 H 0.06 1.20 6.90 -2.39 -0.02 1.18 16 28 H 0.08 2.41 7.87 -2.39 -0.02 2.39 16 29 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 2.12 6.61 -2.39 -0.02 2.11 16 32 H 0.08 2.99 4.92 -2.39 -0.01 2.98 16 33 H 0.12 2.86 6.75 -2.39 -0.02 2.85 16 34 H 0.12 3.09 6.75 -2.39 -0.02 3.08 16 35 H 0.07 2.58 7.59 -2.39 -0.02 2.56 16 Total: -1.00 -67.34 264.71 2.69 -64.65 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.39 Total: 27.46 kcal Atomic # 6 Polarization: -57.04 SS G_CDS: 2.97 Total: -54.07 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -2.40 Total: -91.56 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.73 Total: 53.52 kcal Total: -67.34 2.69 -64.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398225887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.779 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds