Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47272 * 2 1 4 4 C 1.50694 * 109.47031 * 120.00788 * 2 1 3 5 5 H 1.08003 * 120.00214 * 120.00153 * 4 2 1 6 6 C 1.37880 * 120.00073 * 299.99337 * 4 2 1 7 7 N 1.31522 * 119.99481 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00082 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47300 * 60.00293 * 8 6 4 10 10 H 1.48501 * 109.47030 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47111 * 300.00164 * 8 6 4 12 12 N 1.46899 * 109.46947 * 240.00490 * 2 1 3 13 13 C 1.46897 * 111.00012 * 102.26271 * 12 2 1 14 14 C 1.53005 * 115.55067 * 185.83577 * 13 12 2 15 15 C 1.53006 * 115.55107 * 180.02562 * 14 13 12 16 16 C 1.53006 * 117.49771 * 34.33813 * 14 13 12 17 17 C 1.52996 * 117.50075 * 325.67866 * 14 13 12 18 18 C 1.53005 * 117.49860 * 40.17336 * 13 12 2 19 19 C 1.52997 * 117.50420 * 331.51229 * 13 12 2 20 20 H 1.09004 * 109.46906 * 186.04745 * 1 2 3 21 21 H 1.09005 * 109.47043 * 306.04716 * 1 2 3 22 22 H 1.08998 * 109.47439 * 66.04659 * 1 2 3 23 23 H 0.97001 * 119.99371 * 179.97438 * 7 6 4 24 24 H 1.00910 * 110.99892 * 338.31418 * 12 2 1 25 25 H 1.08999 * 109.46824 * 59.99833 * 15 14 13 26 26 H 1.08994 * 109.47117 * 180.02562 * 15 14 13 27 27 H 1.09002 * 109.46847 * 300.00548 * 15 14 13 28 28 H 1.09003 * 117.49383 * 359.97438 * 16 14 13 29 29 H 1.08997 * 117.49760 * 145.02082 * 16 14 13 30 30 H 1.09002 * 117.49741 * 214.97664 * 17 14 13 31 31 H 1.09003 * 117.49630 * 359.97143 * 17 14 13 32 32 H 1.09003 * 117.49592 * 359.97438 * 18 13 12 33 33 H 1.08999 * 117.50152 * 145.01625 * 18 13 12 34 34 H 1.08998 * 117.50441 * 214.97818 * 19 13 12 35 35 H 1.09004 * 117.49568 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6533 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1200 4.0078 9 1 3.8076 -1.1195 4.0076 10 1 1.8271 -0.4204 5.2204 11 1 1.8280 -2.5202 4.0079 12 7 2.0197 -0.6924 -1.1995 13 6 2.4697 0.2686 -2.2152 14 6 2.8714 -0.3349 -3.5626 15 6 3.3408 0.6661 -4.6204 16 6 2.0966 -1.5625 -4.0459 17 6 3.5368 -1.7125 -3.5495 18 6 3.2446 1.4963 -1.7320 19 6 1.8043 1.6463 -2.2285 20 1 -0.3633 -1.0220 0.1083 21 1 -0.3633 0.6048 0.8309 22 1 -0.3634 0.4172 -0.9391 23 1 0.7083 1.1606 3.4845 24 1 1.3148 -1.3102 -1.5734 25 1 4.2153 1.2016 -4.2511 26 1 3.6001 0.1332 -5.5352 27 1 2.5408 1.3766 -4.8285 28 1 1.3010 -1.9404 -3.4037 29 1 1.9213 -1.6573 -5.1176 30 1 4.3084 -1.9058 -4.2948 31 1 3.6889 -2.1887 -2.5809 32 1 3.4199 1.5910 -0.6604 33 1 4.0401 1.8743 -2.3742 34 1 1.6529 2.1229 -3.1970 35 1 1.0322 1.8394 -1.4837 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398225889.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = 35.898971 kcal Electronic energy + Delta-G solvation = -14390.555829 eV Core-core repulsion = 12196.536989 eV Total energy + Delta-G solvation = -2194.018840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68233 -37.37425 -35.39657 -33.35200 -29.85505 -28.77923 -27.24838 -24.04210 -23.55269 -22.80603 -21.66557 -19.17715 -18.42474 -17.17869 -16.81212 -16.31421 -14.86431 -14.84360 -14.76115 -14.12745 -14.09670 -13.51197 -13.21838 -12.97701 -12.88238 -12.74784 -12.39627 -12.28158 -12.21637 -11.95624 -11.90159 -11.74514 -11.45060 -11.04518 -10.78872 -10.45276 -10.21616 -8.75419 -8.09042 -6.18921 1.40764 1.42284 1.50110 2.42801 2.69383 3.18430 3.34497 3.48941 3.70957 3.92129 4.12080 4.13260 4.33735 4.46872 4.67759 4.74065 4.78254 4.85713 4.91689 4.95279 5.04310 5.07653 5.10632 5.18108 5.32479 5.35314 5.42388 5.46988 5.53063 5.69208 5.81983 6.29706 6.68613 6.84848 6.93936 7.49895 8.95785 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043972 B = 0.008762 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.617837 B = 3194.720463 C = 3368.914639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.208 3.792 3 H 0.023 0.977 4 C -0.512 4.512 5 H 0.049 0.951 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.650 5.650 13 C 0.093 3.907 14 C -0.096 4.096 15 C -0.107 4.107 16 C -0.167 4.167 17 C -0.163 4.163 18 C -0.175 4.175 19 C -0.218 4.218 20 H 0.028 0.972 21 H 0.058 0.942 22 H 0.028 0.972 23 H 0.260 0.740 24 H 0.330 0.670 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -1.081 -13.256 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.100 3.900 3 H 0.041 0.959 4 C -0.551 4.551 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.279 5.279 13 C 0.000 4.000 14 C -0.097 4.097 15 C -0.164 4.164 16 C -0.204 4.204 17 C -0.200 4.200 18 C -0.212 4.212 19 C -0.258 4.258 20 H 0.047 0.953 21 H 0.077 0.923 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.150 0.850 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.414 -1.108 -12.836 13.328 hybrid contribution -0.805 0.124 1.191 1.443 sum 2.609 -0.983 -11.645 11.974 Atomic orbital electron populations 1.22218 0.99748 0.99591 0.99291 1.19130 0.90094 0.93781 0.87015 0.95930 1.21464 1.30228 1.12205 0.91211 0.93254 1.25688 0.95621 0.95940 1.01724 1.70014 1.38136 1.24247 1.23905 0.85624 0.78587 0.78703 0.78754 1.20062 1.20894 1.19810 1.60402 1.43122 1.19434 1.04927 1.21028 1.01737 0.85436 0.91764 1.20802 1.05497 0.90278 0.93112 1.21321 1.01056 0.97775 0.96274 1.23061 0.94881 1.00786 1.01701 1.22989 0.95939 0.98445 1.02599 1.23119 0.95235 1.02512 1.00367 1.23649 0.95618 1.03872 1.02669 0.95311 0.92280 0.95316 0.93102 0.85040 0.92005 0.90373 0.91777 0.90146 0.86659 0.87175 0.90153 0.91643 0.86749 0.87040 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.36 8.34 71.98 0.60 -6.76 16 2 C 0.21 10.64 1.84 44.17 0.08 10.72 16 3 H 0.02 1.27 4.41 -2.39 -0.01 1.26 16 4 C -0.51 -29.26 8.84 25.60 0.23 -29.04 16 5 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.46 5.30 84.65 0.45 0.91 16 7 N -0.92 -54.14 11.39 21.45 0.24 -53.89 16 8 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 N -0.65 -28.17 5.92 -452.10 -2.67 -30.84 16 13 C 0.09 3.39 2.99 3.53 0.01 3.40 16 14 C -0.10 -2.70 2.51 -52.18 -0.13 -2.83 16 15 C -0.11 -2.29 8.74 71.98 0.63 -1.67 16 16 C -0.17 -4.21 9.68 30.62 0.30 -3.91 16 17 C -0.16 -4.38 9.73 30.62 0.30 -4.08 16 18 C -0.17 -6.52 9.14 30.62 0.28 -6.24 16 19 C -0.22 -7.80 8.97 30.62 0.27 -7.53 16 20 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 3.22 6.26 -2.38 -0.01 3.21 16 22 H 0.03 1.24 7.21 -2.39 -0.02 1.23 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.33 13.53 6.56 -89.69 -0.59 12.94 16 25 H 0.06 1.31 6.90 -2.39 -0.02 1.30 16 26 H 0.08 1.33 8.11 -2.39 -0.02 1.31 16 27 H 0.06 1.31 6.90 -2.39 -0.02 1.29 16 28 H 0.08 2.24 6.70 -2.39 -0.02 2.22 16 29 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.08 2.62 7.87 -2.39 -0.02 2.60 16 32 H 0.07 2.97 6.68 -2.39 -0.02 2.95 16 33 H 0.11 3.52 6.75 -2.39 -0.02 3.50 16 34 H 0.11 3.27 6.75 -2.39 -0.02 3.25 16 35 H 0.07 3.01 5.47 -2.39 -0.01 3.00 16 Total: -1.00 -61.21 271.35 3.10 -58.11 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.49 Total: 26.45 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 3.01 Total: -47.02 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.43 Total: -84.74 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -61.21 3.10 -58.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398225889.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.013 kcal (2) G-P(sol) polarization free energy of solvation -61.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds