Wall clock time and date at job start Mon Mar 30 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00145 * 2 1 4 4 H 1.48494 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47349 * 299.99936 * 3 2 1 6 6 H 1.48505 * 109.47288 * 60.00132 * 3 2 1 7 7 C 1.37872 * 119.99831 * 179.97438 * 2 1 3 8 8 C 1.51582 * 135.78162 * 0.02562 * 7 2 1 9 9 C 1.53843 * 86.75703 * 154.84034 * 8 7 2 10 10 H 1.09002 * 113.65913 * 139.27053 * 9 8 7 11 11 S 1.81394 * 113.66060 * 270.22215 * 9 8 7 12 12 O 1.42103 * 110.54741 * 178.33319 * 11 9 8 13 13 O 1.42104 * 110.54262 * 315.08728 * 11 9 8 14 14 Cl 2.02001 * 104.45038 * 66.70579 * 11 9 8 15 15 C 1.51772 * 135.75260 * 179.88450 * 7 2 1 16 16 H 0.97006 * 119.99715 * 0.02562 * 1 2 3 17 17 H 1.09004 * 113.66715 * 40.38057 * 8 7 2 18 18 H 1.08995 * 113.67024 * 269.30320 * 8 7 2 19 19 H 1.08997 * 113.66779 * 90.71978 * 15 7 2 20 20 H 1.09009 * 113.72174 * 319.60156 * 15 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 1.6321 -2.6634 0.0007 9 6 3.0014 -2.9207 -0.6517 10 1 3.5110 -3.8035 -0.2655 11 16 2.9665 -2.8630 -2.4644 12 8 4.2682 -3.0706 -2.9952 13 8 1.8479 -3.5826 -2.9647 14 17 2.5529 -0.9342 -2.8994 15 6 3.4652 -1.6061 -0.0014 16 1 -0.4850 0.8401 -0.0004 17 1 0.7877 -2.9009 -0.6464 18 1 1.5360 -3.0903 0.9990 19 1 3.8847 -1.7355 0.9963 20 1 4.0925 -0.9946 -0.6502 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584600402.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:34 Heat of formation + Delta-G solvation = -75.945751 kcal Electronic energy + Delta-G solvation = -10638.941634 eV Core-core repulsion = 8375.174919 eV Total energy + Delta-G solvation = -2263.766715 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 209.990 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.82791 -38.59034 -37.54516 -36.95913 -33.78025 -26.82961 -26.20893 -22.92166 -21.07577 -18.90558 -18.21599 -17.36698 -17.29440 -16.37991 -15.27733 -14.76581 -14.09619 -13.78980 -13.60675 -13.19665 -13.06406 -12.83306 -12.81191 -12.53931 -12.39782 -12.03947 -11.72272 -11.45576 -10.61602 -10.58022 -8.25980 -6.28429 -1.85631 0.52749 1.39781 1.47208 1.53275 2.07995 2.37626 2.56149 3.08529 3.57061 3.91916 4.44762 4.89050 5.11550 5.17124 5.34005 5.45136 6.03829 6.45751 7.43386 8.85582 Molecular weight = 209.99amu Principal moments of inertia in cm(-1) A = 0.044875 B = 0.016982 C = 0.015730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.802159 B = 1648.448127 C = 1779.607352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.085 3.915 3 Si 0.920 3.080 4 H -0.241 1.241 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.564 4.564 8 C 0.004 3.996 9 C -0.523 4.523 10 H 0.185 0.815 11 S 2.400 3.600 12 O -0.909 6.909 13 O -0.913 6.913 14 Cl -0.476 7.476 15 C -0.009 4.009 16 H 0.270 0.730 17 H 0.030 0.970 18 H 0.073 0.927 19 H 0.090 0.910 20 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 -3.492 -0.198 7.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.118 4.118 3 Si 0.744 3.256 4 H -0.164 1.164 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.583 4.583 8 C -0.034 4.034 9 C -0.640 4.640 10 H 0.202 0.798 11 S 2.499 3.501 12 O -0.907 6.907 13 O -0.911 6.911 14 Cl -0.475 7.475 15 C -0.048 4.048 16 H 0.079 0.921 17 H 0.049 0.951 18 H 0.091 0.909 19 H 0.108 0.892 20 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.737 -3.379 -1.023 7.606 hybrid contribution -0.068 0.799 0.375 0.885 sum 6.669 -2.579 -0.648 7.180 Atomic orbital electron populations 1.69931 1.07564 1.28219 1.48981 1.24388 0.94397 1.00375 0.92594 0.85965 0.81370 0.80570 0.77677 1.16407 1.21010 1.20279 1.21502 0.91710 0.91325 1.53747 1.20717 0.88003 0.97279 0.97387 1.31224 1.11161 1.09883 1.11695 0.79791 1.11909 0.75929 0.78757 0.83509 1.93653 1.37732 1.80240 1.79094 1.93645 1.52248 1.65253 1.79999 1.98998 1.96019 1.57595 1.94884 1.21159 0.96312 0.88352 0.98969 0.92082 0.95129 0.90869 0.89171 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.06 13.96 21.45 0.30 -49.76 14 2 C 0.09 4.30 5.07 84.65 0.43 4.73 14 3 Si 0.92 40.41 29.15 68.60 2.00 42.41 14 4 H -0.24 -9.72 7.11 99.48 0.71 -9.01 14 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 14 6 H -0.28 -11.89 7.11 99.48 0.71 -11.18 14 7 C -0.56 -26.00 4.81 -15.97 -0.08 -26.07 14 8 C 0.00 0.18 7.65 30.41 0.23 0.41 14 9 C -0.52 -17.47 4.81 31.10 0.15 -17.32 14 10 H 0.19 4.32 8.14 -2.39 -0.02 4.30 14 11 S 2.40 88.99 5.81 -56.49 -0.33 88.66 14 12 O -0.91 -33.94 18.05 -127.65 -2.30 -36.24 14 13 O -0.91 -38.02 17.74 -127.65 -2.26 -40.29 14 14 Cl -0.48 -20.26 26.09 -2.72 -0.07 -20.33 14 15 C -0.01 -0.34 6.65 30.47 0.20 -0.14 14 16 H 0.27 14.16 8.31 -92.70 -0.77 13.39 14 17 H 0.03 1.39 7.83 -2.39 -0.02 1.37 14 18 H 0.07 2.81 8.14 -2.39 -0.02 2.79 14 19 H 0.09 2.90 8.14 -2.39 -0.02 2.88 14 20 H 0.05 1.74 7.46 -2.38 -0.02 1.72 14 Total: -1.00 -59.39 209.14 -0.48 -59.87 By element: Atomic # 1 Polarization: -7.18 SS G_CDS: 1.26 Total: -5.92 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 0.94 Total: -38.39 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.30 Total: -49.76 kcal Atomic # 8 Polarization: -71.96 SS G_CDS: -4.57 Total: -76.53 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.00 Total: 42.41 kcal Atomic # 16 Polarization: 88.99 SS G_CDS: -0.33 Total: 88.66 kcal Atomic # 17 Polarization: -20.26 SS G_CDS: -0.07 Total: -20.33 kcal Total: -59.39 -0.48 -59.87 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584600402.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.080 kcal (2) G-P(sol) polarization free energy of solvation -59.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds