Wall clock time and date at job start Mon Mar 30 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 C 1.51402 * 136.31981 * 359.97438 * 7 2 1 9 9 C 1.53677 * 87.41138 * 206.00781 * 8 7 2 10 10 H 1.08996 * 113.82737 * 220.14850 * 9 8 7 11 11 S 1.81401 * 113.82551 * 88.69196 * 9 8 7 12 12 O 1.42108 * 110.54170 * 180.02562 * 11 9 8 13 13 O 1.42097 * 110.54561 * 316.75022 * 11 9 8 14 14 Cl 2.01995 * 104.44883 * 68.37537 * 11 9 8 15 15 C 1.51408 * 136.30965 * 179.62961 * 7 2 1 16 16 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 17 17 H 1.08996 * 113.56199 * 320.63692 * 8 7 2 18 18 H 1.09001 * 113.56304 * 91.29958 * 8 7 2 19 19 H 1.08997 * 113.55955 * 268.61974 * 15 7 2 20 20 H 1.09000 * 113.56035 * 39.36171 * 15 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 6 1.6462 -2.6652 -0.0007 9 6 3.0034 -2.9244 0.6719 10 1 3.5159 -3.8122 0.3017 11 16 2.9518 -2.8390 2.4831 12 8 4.2392 -3.0879 3.0309 13 8 2.1781 -1.7255 2.9081 14 17 1.8568 -4.4451 3.0324 15 6 3.4575 -1.6195 -0.0075 16 1 -0.4850 0.8401 0.0004 17 1 0.7928 -2.9059 0.6332 18 1 1.5647 -3.0937 -0.9997 19 1 3.8632 -1.7678 -1.0082 20 1 4.0962 -0.9988 0.6209 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584600405.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:37 Heat of formation + Delta-G solvation = -54.561202 kcal Electronic energy + Delta-G solvation = -10517.860487 eV Core-core repulsion = 8255.021076 eV Total energy + Delta-G solvation = -2262.839412 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 209.990 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.35572 -36.64155 -35.76346 -35.48871 -32.00510 -25.23265 -24.54969 -21.31456 -19.16353 -17.49882 -16.51913 -15.68902 -15.44367 -14.63504 -13.60600 -13.11424 -12.37066 -11.93809 -11.83721 -11.62607 -11.40234 -11.28022 -11.15481 -11.06407 -10.99551 -10.51785 -10.07824 -9.85464 -8.90991 -8.77460 -6.44717 -4.42500 -0.41862 2.30331 3.14781 3.21377 3.22715 3.68836 4.11487 4.34043 4.87080 5.01634 5.45332 5.96119 6.38012 6.60668 6.71484 6.94445 7.08720 7.72698 8.21630 9.19212 10.64579 Molecular weight = 209.99amu Principal moments of inertia in cm(-1) A = 0.049903 B = 0.013613 C = 0.012966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.951231 B = 2056.329402 C = 2159.017338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.117 3.883 3 Si 0.897 3.103 4 H -0.267 1.267 5 H -0.264 1.264 6 H -0.277 1.277 7 C -0.530 4.530 8 C 0.015 3.985 9 C -0.548 4.548 10 H 0.124 0.876 11 S 2.363 3.637 12 O -0.908 6.908 13 O -0.847 6.847 14 Cl -0.523 7.523 15 C -0.001 4.001 16 H 0.276 0.724 17 H 0.051 0.949 18 H 0.064 0.936 19 H 0.076 0.924 20 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -3.473 0.126 5.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.091 4.091 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.202 1.202 7 C -0.551 4.551 8 C -0.023 4.023 9 C -0.663 4.663 10 H 0.142 0.858 11 S 2.464 3.536 12 O -0.906 6.906 13 O -0.845 6.845 14 Cl -0.522 7.522 15 C -0.040 4.040 16 H 0.086 0.914 17 H 0.069 0.931 18 H 0.082 0.918 19 H 0.094 0.906 20 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.501 -3.387 0.990 5.720 hybrid contribution 0.493 0.625 -0.489 0.934 sum 4.995 -2.762 0.502 5.729 Atomic orbital electron populations 1.69817 1.06167 1.28319 1.44509 1.23881 0.94365 0.98280 0.92614 0.86434 0.80088 0.81931 0.79385 1.19219 1.18856 1.20237 1.20688 0.89349 0.90999 1.54052 1.20596 0.87213 0.97965 0.96526 1.32212 1.12769 1.08202 1.13158 0.85833 1.14242 0.77709 0.78694 0.82938 1.93622 1.36448 1.82391 1.78188 1.93708 1.68049 1.41739 1.81000 1.98990 1.86257 1.72901 1.94028 1.20916 0.98219 0.88409 0.96466 0.91440 0.93060 0.91778 0.90590 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.34 13.96 55.43 0.77 -22.57 14 2 C 0.12 3.03 5.47 -17.82 -0.10 2.93 14 3 Si 0.90 19.85 29.18 -169.99 -4.96 14.89 14 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 14 5 H -0.26 -5.52 7.11 56.52 0.40 -5.12 14 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14 7 C -0.53 -12.98 5.81 -98.80 -0.57 -13.56 14 8 C 0.02 0.33 7.53 -27.40 -0.21 0.12 14 9 C -0.55 -10.32 4.67 -25.89 -0.12 -10.44 14 10 H 0.12 1.84 8.14 -51.93 -0.42 1.42 14 11 S 2.36 47.70 5.65 -107.50 -0.61 47.09 14 12 O -0.91 -18.83 18.05 -57.54 -1.04 -19.87 14 13 O -0.85 -20.15 17.10 -57.54 -0.98 -21.13 14 14 Cl -0.52 -9.96 29.46 -51.86 -1.53 -11.49 14 15 C 0.00 -0.01 7.00 -27.25 -0.19 -0.20 14 16 H 0.28 7.02 8.31 -40.82 -0.34 6.68 14 17 H 0.05 1.16 8.11 -51.93 -0.42 0.74 14 18 H 0.06 1.30 8.14 -51.93 -0.42 0.88 14 19 H 0.08 1.39 8.14 -51.93 -0.42 0.96 14 20 H 0.04 0.71 8.08 -51.93 -0.42 0.29 14 LS Contribution 214.11 15.07 3.23 3.23 Total: -1.00 -28.77 214.11 -7.55 -36.32 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: -1.24 Total: -5.31 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -1.19 Total: -21.15 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 0.77 Total: -22.57 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -2.02 Total: -41.00 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.96 Total: 14.89 kcal Atomic # 16 Polarization: 47.70 SS G_CDS: -0.61 Total: 47.09 kcal Atomic # 17 Polarization: -9.96 SS G_CDS: -1.53 Total: -11.49 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -28.77 -7.55 -36.32 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584600405.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.239 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds