Wall clock time and date at job start Mon Mar 30 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 C 1.51402 * 136.31981 * 359.97438 * 7 2 1 9 9 C 1.53677 * 87.41138 * 206.00781 * 8 7 2 10 10 H 1.08996 * 113.82737 * 220.14850 * 9 8 7 11 11 S 1.81401 * 113.82551 * 88.69196 * 9 8 7 12 12 O 1.42108 * 110.54170 * 180.02562 * 11 9 8 13 13 O 1.42097 * 110.54561 * 316.75022 * 11 9 8 14 14 Cl 2.01995 * 104.44883 * 68.37537 * 11 9 8 15 15 C 1.51408 * 136.30965 * 179.62961 * 7 2 1 16 16 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 17 17 H 1.08996 * 113.56199 * 320.63692 * 8 7 2 18 18 H 1.09001 * 113.56304 * 91.29958 * 8 7 2 19 19 H 1.08997 * 113.55955 * 268.61974 * 15 7 2 20 20 H 1.09000 * 113.56035 * 39.36171 * 15 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 6 1.6462 -2.6652 -0.0007 9 6 3.0034 -2.9244 0.6719 10 1 3.5159 -3.8122 0.3017 11 16 2.9518 -2.8390 2.4831 12 8 4.2392 -3.0879 3.0309 13 8 2.1781 -1.7255 2.9081 14 17 1.8568 -4.4451 3.0324 15 6 3.4575 -1.6195 -0.0075 16 1 -0.4850 0.8401 0.0004 17 1 0.7928 -2.9059 0.6332 18 1 1.5647 -3.0937 -0.9997 19 1 3.8632 -1.7678 -1.0082 20 1 4.0962 -0.9988 0.6209 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584600405.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:37 Heat of formation + Delta-G solvation = -75.260272 kcal Electronic energy + Delta-G solvation = -10518.758067 eV Core-core repulsion = 8255.021076 eV Total energy + Delta-G solvation = -2263.736991 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 209.990 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.05007 -38.35599 -37.53841 -37.18068 -33.82508 -26.94842 -26.21683 -23.07267 -20.86008 -19.17508 -18.21909 -17.39357 -17.12606 -16.42065 -15.29596 -14.80632 -14.12251 -13.68628 -13.54147 -13.32819 -13.03730 -12.91931 -12.85638 -12.81801 -12.66275 -12.15509 -11.75963 -11.50353 -10.64343 -10.60366 -8.29331 -6.33065 -2.05775 0.63785 1.40177 1.44201 1.50737 2.02730 2.34549 2.65979 3.04026 3.37826 3.95415 4.40844 4.78367 5.03512 5.10396 5.26015 5.39935 6.00897 6.41367 7.38075 8.83107 Molecular weight = 209.99amu Principal moments of inertia in cm(-1) A = 0.049903 B = 0.013613 C = 0.012966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.951231 B = 2056.329402 C = 2159.017338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.064 3.936 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.240 1.240 6 H -0.276 1.276 7 C -0.571 4.571 8 C 0.008 3.992 9 C -0.525 4.525 10 H 0.180 0.820 11 S 2.388 3.612 12 O -0.905 6.905 13 O -0.886 6.886 14 Cl -0.503 7.503 15 C 0.000 4.000 16 H 0.271 0.729 17 H 0.029 0.971 18 H 0.077 0.923 19 H 0.101 0.899 20 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.713 -4.753 -0.027 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.138 4.138 3 Si 0.760 3.240 4 H -0.204 1.204 5 H -0.163 1.163 6 H -0.201 1.201 7 C -0.590 4.590 8 C -0.030 4.030 9 C -0.642 4.642 10 H 0.198 0.802 11 S 2.488 3.512 12 O -0.903 6.903 13 O -0.885 6.885 14 Cl -0.502 7.502 15 C -0.039 4.039 16 H 0.080 0.920 17 H 0.048 0.952 18 H 0.095 0.905 19 H 0.119 0.881 20 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.533 -4.635 0.797 8.050 hybrid contribution -0.081 0.760 -0.274 0.812 sum 6.453 -3.875 0.522 7.545 Atomic orbital electron populations 1.69933 1.07715 1.28516 1.48932 1.24669 0.94877 1.01364 0.92906 0.85805 0.80239 0.79150 0.78818 1.20420 1.16298 1.20063 1.21432 0.92245 0.91888 1.53450 1.20643 0.87861 0.97127 0.97386 1.31438 1.11455 1.10283 1.11017 0.80236 1.12587 0.77024 0.77981 0.83594 1.93643 1.35793 1.82333 1.78559 1.93702 1.69147 1.43777 1.81853 1.98991 1.85817 1.71486 1.93949 1.21033 0.96034 0.88489 0.98351 0.91954 0.95208 0.90514 0.88075 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.94 13.96 21.45 0.30 -51.64 14 2 C 0.06 3.34 5.47 84.66 0.46 3.80 14 3 Si 0.94 40.69 29.18 68.60 2.00 42.69 14 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 14 5 H -0.24 -9.32 7.11 99.48 0.71 -8.62 14 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 14 7 C -0.57 -27.48 5.81 -16.09 -0.09 -27.57 14 8 C 0.01 0.33 7.53 30.16 0.23 0.56 14 9 C -0.52 -17.78 4.67 31.14 0.15 -17.64 14 10 H 0.18 4.24 8.14 -2.39 -0.02 4.22 14 11 S 2.39 89.90 5.65 -56.49 -0.32 89.58 14 12 O -0.90 -34.26 18.05 -127.65 -2.30 -36.56 14 13 O -0.89 -41.36 17.10 -127.65 -2.18 -43.54 14 14 Cl -0.50 -17.82 29.46 -2.72 -0.08 -17.91 14 15 C 0.00 0.01 7.00 30.26 0.21 0.22 14 16 H 0.27 14.57 8.31 -92.70 -0.77 13.80 14 17 H 0.03 1.34 8.11 -2.39 -0.02 1.32 14 18 H 0.08 2.94 8.14 -2.39 -0.02 2.92 14 19 H 0.10 3.24 8.14 -2.39 -0.02 3.22 14 20 H 0.04 1.53 8.08 -2.39 -0.02 1.51 14 Total: -1.00 -61.93 214.11 -0.38 -62.30 By element: Atomic # 1 Polarization: -5.56 SS G_CDS: 1.25 Total: -4.30 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 0.95 Total: -40.62 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.30 Total: -51.64 kcal Atomic # 8 Polarization: -75.62 SS G_CDS: -4.49 Total: -80.10 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.00 Total: 42.69 kcal Atomic # 16 Polarization: 89.90 SS G_CDS: -0.32 Total: 89.58 kcal Atomic # 17 Polarization: -17.82 SS G_CDS: -0.08 Total: -17.91 kcal Total: -61.93 -0.38 -62.30 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584600405.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.956 kcal (2) G-P(sol) polarization free energy of solvation -61.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds