Wall clock time and date at job start Mon Mar 30 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 115.54894 * 34.56130 * 9 7 2 11 11 C 1.53001 * 117.50266 * 248.88526 * 9 7 2 12 12 C 1.52996 * 60.00163 * 252.51053 * 11 9 7 13 13 H 1.09007 * 117.49961 * 107.48726 * 12 11 9 14 14 S 1.81398 * 117.50347 * 252.50733 * 12 11 9 15 15 O 1.42098 * 110.54686 * 248.62616 * 14 12 11 16 16 O 1.42107 * 110.53728 * 25.37396 * 14 12 11 17 17 Cl 2.01995 * 104.45064 * 136.99770 * 14 12 11 18 18 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 19 19 H 1.08999 * 117.49764 * 0.02562 * 11 9 7 20 20 H 1.09000 * 117.49465 * 144.99539 * 11 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.3124 -2.5024 -0.5484 11 6 1.3267 -3.3528 1.2728 12 6 2.0733 -3.7894 0.0107 13 1 3.1592 -3.6943 0.0100 14 16 1.4113 -5.2082 -0.9055 15 8 2.2882 -6.3216 -0.8022 16 8 0.0174 -5.3489 -0.6675 17 17 1.5325 -4.6568 -2.8449 18 1 -0.4850 0.8400 0.0004 19 1 1.9211 -2.9703 2.1026 20 1 0.4376 -3.9177 1.5528 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584601753.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:59 Heat of formation + Delta-G solvation = -80.995575 kcal Electronic energy + Delta-G solvation = -10114.252022 eV Core-core repulsion = 7850.266330 eV Total energy + Delta-G solvation = -2263.985692 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 209.990 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.96022 -38.07318 -37.70547 -37.24128 -34.35391 -27.95356 -24.46841 -22.64985 -21.04414 -19.23708 -18.98636 -17.75249 -17.39433 -16.55334 -15.22749 -14.61884 -13.91240 -13.72595 -13.70692 -13.32121 -13.09001 -13.00782 -12.96323 -12.87887 -12.35746 -12.15763 -11.67964 -11.38615 -11.31793 -10.51757 -8.29832 -6.37947 -2.11972 0.45345 1.44308 1.48466 1.59033 1.88434 2.35188 2.50446 2.62479 3.15003 3.77597 4.12494 4.34844 4.84126 4.96965 5.30254 5.65590 6.03177 6.68554 7.27686 8.80987 Molecular weight = 209.99amu Principal moments of inertia in cm(-1) A = 0.053266 B = 0.010030 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.535242 B = 2790.817843 C = 2938.748317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.059 3.941 10 H 0.080 0.920 11 C -0.137 4.137 12 C -0.628 4.628 13 H 0.184 0.816 14 S 2.415 3.585 15 O -0.899 6.899 16 O -0.899 6.899 17 Cl -0.494 7.494 18 H 0.271 0.729 19 H 0.123 0.877 20 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -4.955 0.552 6.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.094 0.906 9 C 0.038 3.962 10 H 0.098 0.902 11 C -0.178 4.178 12 C -0.744 4.744 13 H 0.201 0.799 14 S 2.516 3.484 15 O -0.897 6.897 16 O -0.898 6.898 17 Cl -0.493 7.493 18 H 0.080 0.920 19 H 0.141 0.859 20 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.320 -5.527 0.103 6.449 hybrid contribution 0.448 0.985 0.106 1.087 sum 3.768 -4.543 0.209 5.906 Atomic orbital electron populations 1.70042 1.07659 1.28621 1.48602 1.25854 0.95662 1.03023 0.93432 0.85357 0.79198 0.78520 0.77754 1.18403 1.20667 1.20313 1.21001 0.93607 0.89355 1.51596 0.90600 1.19984 0.93995 0.86283 0.95919 0.90213 1.23306 1.00054 1.03151 0.91336 1.31921 1.11429 1.14215 1.16811 0.79887 1.11497 0.77048 0.80041 0.79790 1.93659 1.66947 1.47616 1.81522 1.93676 1.30098 1.85974 1.80017 1.99008 1.97873 1.95323 1.57066 0.92003 0.85868 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.80 13.13 21.45 0.28 -48.52 14 2 C 0.02 1.11 5.46 84.65 0.46 1.58 14 3 Si 0.97 39.27 29.54 68.60 2.03 41.29 14 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 14 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 14 6 H -0.28 -11.07 7.11 99.48 0.71 -10.36 14 7 C -0.52 -25.03 9.20 25.60 0.24 -24.80 14 8 H 0.08 3.49 7.81 -2.91 -0.02 3.46 14 9 C 0.06 2.56 5.34 -11.54 -0.06 2.50 14 10 H 0.08 3.85 7.90 -2.39 -0.02 3.83 14 11 C -0.14 -4.89 9.88 30.59 0.30 -4.58 14 12 C -0.63 -21.32 6.21 30.59 0.19 -21.13 14 13 H 0.18 5.42 8.14 -2.38 -0.02 5.40 14 14 S 2.41 80.52 6.07 -56.49 -0.34 80.18 14 15 O -0.90 -31.22 18.05 -127.65 -2.30 -33.52 14 16 O -0.90 -33.94 17.74 -127.65 -2.26 -36.21 14 17 Cl -0.49 -17.40 29.46 -2.72 -0.08 -17.48 14 18 H 0.27 13.65 8.31 -92.71 -0.77 12.88 14 19 H 0.12 4.03 8.14 -2.39 -0.02 4.02 14 20 H 0.11 3.56 7.99 -2.39 -0.02 3.54 14 Total: -1.00 -57.68 219.70 -0.30 -57.99 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.25 Total: 2.71 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 1.13 Total: -46.43 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.28 Total: -48.52 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -4.57 Total: -69.73 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: 80.52 SS G_CDS: -0.34 Total: 80.18 kcal Atomic # 17 Polarization: -17.40 SS G_CDS: -0.08 Total: -17.48 kcal Total: -57.68 -0.30 -57.99 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584601753.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.009 kcal (2) G-P(sol) polarization free energy of solvation -57.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds