Wall clock time and date at job start Mon Mar 30 2020 03:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.08994 * 115.55357 * 325.86584 * 9 7 2 11 11 C 1.53010 * 117.49731 * 111.53276 * 9 7 2 12 12 C 1.53006 * 117.49751 * 180.18801 * 9 7 2 13 13 H 1.08997 * 117.49921 * 0.02562 * 12 9 7 14 14 S 1.81399 * 117.49526 * 145.00106 * 12 9 7 15 15 O 1.42097 * 110.54381 * 180.02562 * 14 12 9 16 16 O 1.42101 * 110.54665 * 316.75125 * 14 12 9 17 17 Cl 2.02000 * 104.45096 * 68.37726 * 14 12 9 18 18 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 19 19 H 1.08997 * 117.50075 * 214.98141 * 11 9 7 20 20 H 1.09003 * 117.49279 * 359.97438 * 11 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.9793 -0.3816 -0.5619 11 6 4.2234 -1.6885 1.2551 12 6 4.2180 -2.5511 -0.0093 13 1 3.5928 -3.4440 -0.0075 14 16 5.7700 -2.6850 -0.9389 15 8 6.2964 -4.0014 -0.8435 16 8 5.6568 -2.0310 -2.1953 17 17 7.0785 -1.5481 0.0983 18 1 -0.4850 0.8400 -0.0004 19 1 5.1595 -1.2017 1.5283 20 1 3.6015 -2.0134 2.0894 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584601755.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:04 Heat of formation + Delta-G solvation = -77.204039 kcal Electronic energy + Delta-G solvation = -10180.199344 eV Core-core repulsion = 7916.378065 eV Total energy + Delta-G solvation = -2263.821279 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 209.990 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91518 -38.41250 -37.67984 -37.33013 -34.48497 -28.39280 -24.43882 -22.36204 -21.31248 -19.56378 -18.99860 -17.92407 -17.43031 -16.58914 -14.99041 -14.81994 -14.52731 -13.91413 -13.74014 -13.46115 -13.13427 -13.03515 -13.01958 -12.77216 -12.25095 -11.82247 -11.75904 -11.72487 -11.40960 -10.71613 -8.40873 -6.46647 -2.22242 0.42021 1.38973 1.42976 1.52447 1.86788 2.14578 2.31426 2.73504 3.07042 3.58827 3.94018 4.12559 4.69495 4.83545 5.09650 5.40056 6.12745 6.56104 7.15755 8.72916 Molecular weight = 209.99amu Principal moments of inertia in cm(-1) A = 0.051142 B = 0.011399 C = 0.010601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.365535 B = 2455.779120 C = 2640.614010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.028 3.972 3 Si 0.927 3.073 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.228 1.228 7 C -0.507 4.507 8 H 0.050 0.950 9 C 0.018 3.982 10 H 0.095 0.905 11 C -0.143 4.143 12 C -0.618 4.618 13 H 0.184 0.816 14 S 2.415 3.585 15 O -0.895 6.895 16 O -0.895 6.895 17 Cl -0.484 7.484 18 H 0.274 0.726 19 H 0.129 0.871 20 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.760 -1.415 1.783 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.174 4.174 3 Si 0.749 3.251 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.150 1.150 7 C -0.545 4.545 8 H 0.069 0.931 9 C -0.003 4.003 10 H 0.113 0.887 11 C -0.183 4.183 12 C -0.734 4.734 13 H 0.201 0.799 14 S 2.515 3.485 15 O -0.894 6.894 16 O -0.893 6.893 17 Cl -0.483 7.483 18 H 0.083 0.917 19 H 0.147 0.853 20 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.313 -1.405 1.348 11.479 hybrid contribution -0.684 0.316 -0.003 0.754 sum 10.629 -1.090 1.346 10.769 Atomic orbital electron populations 1.69987 1.08309 1.29043 1.49210 1.25835 0.95460 1.03185 0.92885 0.85993 0.80759 0.78475 0.79891 1.19012 1.20501 1.15045 1.20600 0.88408 0.94089 1.51357 0.93132 1.20255 0.94953 0.87633 0.97429 0.88684 1.23594 1.04480 0.99102 0.91125 1.31935 1.14877 1.08169 1.18379 0.79877 1.11648 0.80695 0.77139 0.78979 1.93667 1.77204 1.32920 1.85583 1.93695 1.85239 1.74565 1.35800 1.98995 1.77249 1.84658 1.87428 0.91657 0.85298 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.89 13.96 21.45 0.30 -52.60 14 2 C 0.03 1.44 5.47 84.65 0.46 1.91 14 3 Si 0.93 38.74 27.18 68.60 1.86 40.60 14 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 14 5 H -0.28 -11.57 7.11 99.48 0.71 -10.87 14 6 H -0.23 -8.39 6.93 99.48 0.69 -7.70 14 7 C -0.51 -25.66 9.76 25.60 0.25 -25.41 14 8 H 0.05 2.82 8.06 -2.91 -0.02 2.79 14 9 C 0.02 0.72 4.51 -11.53 -0.05 0.66 14 10 H 0.10 3.61 6.48 -2.39 -0.02 3.60 14 11 C -0.14 -4.47 9.66 30.62 0.30 -4.17 14 12 C -0.62 -19.67 6.42 30.62 0.20 -19.47 14 13 H 0.18 5.45 8.14 -2.39 -0.02 5.43 14 14 S 2.42 73.06 6.20 -56.49 -0.35 72.71 14 15 O -0.90 -29.02 18.05 -127.65 -2.30 -31.32 14 16 O -0.89 -31.83 18.05 -127.65 -2.30 -34.14 14 17 Cl -0.48 -13.80 27.23 -2.72 -0.07 -13.88 14 18 H 0.27 14.55 8.31 -92.71 -0.77 13.78 14 19 H 0.13 3.37 6.18 -2.39 -0.01 3.36 14 20 H 0.12 3.71 8.14 -2.39 -0.02 3.69 14 Total: -1.00 -60.74 212.95 -0.47 -61.21 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.24 Total: 3.88 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 1.15 Total: -46.48 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.30 Total: -52.60 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -4.61 Total: -65.46 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.86 Total: 40.60 kcal Atomic # 16 Polarization: 73.06 SS G_CDS: -0.35 Total: 72.71 kcal Atomic # 17 Polarization: -13.80 SS G_CDS: -0.07 Total: -13.88 kcal Total: -60.74 -0.47 -61.21 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584601755.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.990 kcal (2) G-P(sol) polarization free energy of solvation -60.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds