Wall clock time and date at job start Mon Mar 30 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47150 * 2 1 4 4 C 1.36933 * 120.00229 * 90.51900 * 3 2 1 5 5 H 1.07997 * 120.00531 * 33.85250 * 4 3 2 6 6 C 1.38820 * 119.99648 * 213.85718 * 4 3 2 7 7 N 1.31613 * 119.99947 * 22.89690 * 6 4 3 8 8 Si 1.86803 * 119.99552 * 202.89715 * 6 4 3 9 9 H 1.48498 * 109.47130 * 269.99550 * 8 6 4 10 10 H 1.48498 * 109.47366 * 30.00012 * 8 6 4 11 11 H 1.48495 * 109.46765 * 149.99935 * 8 6 4 12 12 C 1.46506 * 119.99788 * 270.51673 * 3 2 1 13 13 C 1.52999 * 109.46952 * 270.00178 * 12 3 2 14 14 H 1.08997 * 110.67215 * 308.22784 * 13 12 3 15 15 C 1.54897 * 110.75149 * 184.99843 * 13 12 3 16 16 C 1.54269 * 104.19293 * 203.74042 * 15 13 12 17 17 H 1.09004 * 117.41020 * 163.59181 * 16 15 13 18 18 C 1.53002 * 118.19905 * 318.22126 * 16 15 13 19 19 C 1.53872 * 106.59665 * 23.61036 * 16 15 13 20 20 H 1.09007 * 121.32629 * 138.62840 * 19 16 15 21 21 C 1.54263 * 106.60328 * 359.97438 * 19 16 15 22 22 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46849 * 300.00054 * 1 2 3 24 24 H 1.08996 * 109.47122 * 60.00414 * 1 2 3 25 25 H 1.08993 * 109.47598 * 239.99547 * 2 1 3 26 26 H 1.09005 * 109.46896 * 119.99631 * 2 1 3 27 27 H 0.97000 * 119.99800 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46674 * 29.99878 * 12 3 2 29 29 H 1.08997 * 109.46846 * 149.99857 * 12 3 2 30 30 H 1.08997 * 110.48822 * 322.41769 * 15 13 12 31 31 H 1.08999 * 110.48284 * 85.06530 * 15 13 12 32 32 H 1.09002 * 117.45994 * 201.21906 * 18 16 15 33 33 H 1.08999 * 117.46144 * 346.01467 * 18 16 15 34 34 H 1.08989 * 110.48827 * 217.70960 * 21 19 16 35 35 H 1.09003 * 110.48270 * 95.06645 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2567 2.0232 1.1858 5 1 2.6210 1.4674 2.0371 6 6 2.0300 3.3885 1.2937 7 7 1.1950 3.9841 0.4689 8 14 2.9101 4.3802 2.6095 9 1 2.0900 4.3980 3.8474 10 1 4.2283 3.7603 2.8978 11 1 3.1115 5.7709 2.1293 12 6 2.2517 2.0756 -1.2688 13 6 3.6929 1.8365 -1.7234 14 1 4.3935 2.0771 -0.9239 15 6 4.0101 2.6587 -2.9972 16 6 5.1760 1.8957 -3.6593 17 1 5.3950 2.1214 -4.7030 18 6 6.2902 1.3563 -2.7602 19 6 5.0945 0.4444 -3.1546 20 1 5.2624 -0.3989 -3.8245 21 6 3.8823 0.3762 -2.2029 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.0369 4.9382 0.5440 28 1 1.5644 1.6937 -2.0237 29 1 2.0858 3.1444 -1.1338 30 1 3.1453 2.6839 -3.6603 31 1 4.3180 3.6700 -2.7316 32 1 7.2530 1.1441 -3.2252 33 1 6.3351 1.7290 -1.7369 34 1 4.0968 -0.2783 -1.3582 35 1 2.9965 0.0329 -2.7374 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595301420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:42 Heat of formation + Delta-G solvation = 33.082917 kcal Electronic energy + Delta-G solvation = -14448.457983 eV Core-core repulsion = 12254.317030 eV Total energy + Delta-G solvation = -2194.140953 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.10845 -35.77378 -31.75496 -31.42942 -28.49232 -27.68338 -25.42870 -23.54049 -21.92275 -19.99608 -19.21270 -18.66158 -16.58893 -15.31843 -15.01314 -14.37360 -13.66347 -13.46094 -13.11302 -12.67266 -12.39964 -12.05820 -11.53287 -11.35195 -11.13195 -10.92287 -10.72878 -10.65291 -10.43486 -10.26148 -10.09091 -9.73689 -9.70954 -9.45556 -9.39860 -9.09825 -8.41484 -6.51405 -5.70034 -3.23404 3.39272 3.47088 3.50577 4.02377 4.54587 4.92716 5.11027 5.30511 5.37288 5.48122 5.65824 5.80731 6.00882 6.05272 6.12143 6.18344 6.24034 6.38077 6.47871 6.49434 6.52989 6.56607 6.64168 6.69638 6.80097 6.88283 7.03621 7.06464 7.32539 7.36879 7.81384 7.90147 8.58604 9.27710 9.92468 10.49062 11.29126 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.011709 C = 0.009331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.850504 B = 2390.704146 C = 3000.044199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.251 4.251 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.288 1.288 10 H -0.279 1.279 11 H -0.290 1.290 12 C 0.152 3.848 13 C -0.108 4.108 14 H 0.072 0.928 15 C -0.090 4.090 16 C -0.165 4.165 17 H 0.098 0.902 18 C -0.161 4.161 19 C -0.170 4.170 20 H 0.099 0.901 21 C -0.082 4.082 22 H 0.028 0.972 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.253 0.747 28 H 0.020 0.980 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 -4.800 -6.500 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.381 4.381 5 H 0.077 0.923 6 C -0.193 4.193 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.215 1.215 10 H -0.205 1.205 11 H -0.216 1.216 12 C 0.026 3.974 13 C -0.129 4.129 14 H 0.091 0.909 15 C -0.128 4.128 16 C -0.184 4.184 17 H 0.116 0.884 18 C -0.198 4.198 19 C -0.188 4.188 20 H 0.117 0.883 21 C -0.119 4.119 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.240 -4.639 -6.501 9.552 hybrid contribution 0.431 0.585 0.548 0.910 sum 5.671 -4.054 -5.953 9.167 Atomic orbital electron populations 1.22302 1.00068 0.98183 1.01772 1.20916 0.91729 0.87891 0.98112 1.43857 1.74567 1.09742 1.02300 1.19052 1.36977 0.91218 0.90851 0.92294 1.25032 0.97580 0.98542 0.98114 1.69973 1.33515 1.09999 1.39727 0.86462 0.80120 0.79597 0.81633 1.21460 1.20475 1.21577 1.20942 0.89280 1.01638 0.85537 1.22795 1.02103 0.92712 0.95279 0.90927 1.21943 0.95295 0.98450 0.97151 1.23164 0.99333 0.97315 0.98547 0.88429 1.23230 0.92327 1.03480 1.00738 1.23621 0.98324 0.93691 1.03200 0.88275 1.21940 0.94392 0.98571 0.96979 0.95274 0.92815 0.93927 0.94629 0.94324 0.93730 0.96161 0.88264 0.91523 0.92133 0.89286 0.88772 0.92005 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 37.16 0.38 -2.98 16 2 C 0.14 3.00 6.18 -4.04 -0.02 2.97 16 3 N -0.58 -14.47 2.41 -173.23 -0.42 -14.89 16 4 C -0.25 -6.86 9.48 -15.06 -0.14 -7.01 16 5 H 0.06 1.62 7.93 -52.49 -0.42 1.20 16 6 C 0.01 0.18 4.95 -17.43 -0.09 0.10 16 7 N -0.89 -25.56 11.30 55.49 0.63 -24.94 16 8 Si 0.89 21.70 29.61 -169.99 -5.03 16.67 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 C 0.15 3.55 4.79 -4.04 -0.02 3.53 16 13 C -0.11 -2.15 2.64 -88.64 -0.23 -2.38 16 14 H 0.07 1.61 7.42 -51.93 -0.39 1.22 16 15 C -0.09 -1.57 6.21 -25.07 -0.16 -1.72 16 16 C -0.17 -2.50 6.97 -89.50 -0.62 -3.12 16 17 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.16 -2.35 9.94 -25.42 -0.25 -2.60 16 19 C -0.17 -2.59 7.16 -88.19 -0.63 -3.22 16 20 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 21 C -0.08 -1.42 4.78 -25.09 -0.12 -1.54 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.69 6.30 -51.93 -0.33 0.36 16 26 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.02 0.46 7.92 -51.93 -0.41 0.05 16 29 H 0.10 2.65 5.30 -51.93 -0.28 2.37 16 30 H 0.07 1.12 8.05 -51.93 -0.42 0.71 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.50 7.27 -51.93 -0.38 1.12 16 34 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 35 H 0.06 1.08 7.63 -51.93 -0.40 0.68 16 LS Contribution 277.10 15.07 4.18 4.18 Total: -1.00 -28.08 277.10 -8.49 -36.57 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.93 Total: 0.38 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.91 Total: -17.97 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.21 Total: -39.83 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.08 -8.49 -36.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.653 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds