Wall clock time and date at job start Mon Mar 30 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47150 * 2 1 4 4 C 1.36933 * 120.00229 * 90.51900 * 3 2 1 5 5 H 1.07997 * 120.00531 * 33.85250 * 4 3 2 6 6 C 1.38820 * 119.99648 * 213.85718 * 4 3 2 7 7 N 1.31613 * 119.99947 * 22.89690 * 6 4 3 8 8 Si 1.86803 * 119.99552 * 202.89715 * 6 4 3 9 9 H 1.48498 * 109.47130 * 269.99550 * 8 6 4 10 10 H 1.48498 * 109.47366 * 30.00012 * 8 6 4 11 11 H 1.48495 * 109.46765 * 149.99935 * 8 6 4 12 12 C 1.46506 * 119.99788 * 270.51673 * 3 2 1 13 13 C 1.52999 * 109.46952 * 270.00178 * 12 3 2 14 14 H 1.08997 * 110.67215 * 308.22784 * 13 12 3 15 15 C 1.54897 * 110.75149 * 184.99843 * 13 12 3 16 16 C 1.54269 * 104.19293 * 203.74042 * 15 13 12 17 17 H 1.09004 * 117.41020 * 163.59181 * 16 15 13 18 18 C 1.53002 * 118.19905 * 318.22126 * 16 15 13 19 19 C 1.53872 * 106.59665 * 23.61036 * 16 15 13 20 20 H 1.09007 * 121.32629 * 138.62840 * 19 16 15 21 21 C 1.54263 * 106.60328 * 359.97438 * 19 16 15 22 22 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46849 * 300.00054 * 1 2 3 24 24 H 1.08996 * 109.47122 * 60.00414 * 1 2 3 25 25 H 1.08993 * 109.47598 * 239.99547 * 2 1 3 26 26 H 1.09005 * 109.46896 * 119.99631 * 2 1 3 27 27 H 0.97000 * 119.99800 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46674 * 29.99878 * 12 3 2 29 29 H 1.08997 * 109.46846 * 149.99857 * 12 3 2 30 30 H 1.08997 * 110.48822 * 322.41769 * 15 13 12 31 31 H 1.08999 * 110.48284 * 85.06530 * 15 13 12 32 32 H 1.09002 * 117.45994 * 201.21906 * 18 16 15 33 33 H 1.08999 * 117.46144 * 346.01467 * 18 16 15 34 34 H 1.08989 * 110.48827 * 217.70960 * 21 19 16 35 35 H 1.09003 * 110.48270 * 95.06645 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2567 2.0232 1.1858 5 1 2.6210 1.4674 2.0371 6 6 2.0300 3.3885 1.2937 7 7 1.1950 3.9841 0.4689 8 14 2.9101 4.3802 2.6095 9 1 2.0900 4.3980 3.8474 10 1 4.2283 3.7603 2.8978 11 1 3.1115 5.7709 2.1293 12 6 2.2517 2.0756 -1.2688 13 6 3.6929 1.8365 -1.7234 14 1 4.3935 2.0771 -0.9239 15 6 4.0101 2.6587 -2.9972 16 6 5.1760 1.8957 -3.6593 17 1 5.3950 2.1214 -4.7030 18 6 6.2902 1.3563 -2.7602 19 6 5.0945 0.4444 -3.1546 20 1 5.2624 -0.3989 -3.8245 21 6 3.8823 0.3762 -2.2029 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.0369 4.9382 0.5440 28 1 1.5644 1.6937 -2.0237 29 1 2.0858 3.1444 -1.1338 30 1 3.1453 2.6839 -3.6603 31 1 4.3180 3.6700 -2.7316 32 1 7.2530 1.1441 -3.2252 33 1 6.3351 1.7290 -1.7369 34 1 4.0968 -0.2783 -1.3582 35 1 2.9965 0.0329 -2.7374 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595301420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:42 Heat of formation + Delta-G solvation = 19.371462 kcal Electronic energy + Delta-G solvation = -14449.052556 eV Core-core repulsion = 12254.317030 eV Total energy + Delta-G solvation = -2194.735527 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47481 -37.59838 -33.77958 -32.97231 -30.30937 -29.04910 -27.24529 -25.37162 -23.36042 -21.81884 -20.46934 -20.12649 -18.54966 -16.88498 -16.62240 -16.21354 -15.57091 -15.13970 -14.41203 -14.37511 -13.87284 -13.80041 -13.23956 -13.02147 -12.83541 -12.64449 -12.46162 -12.25983 -12.10938 -12.07857 -11.71580 -11.57583 -11.27416 -11.15189 -10.80383 -10.47705 -10.36085 -8.54929 -7.77859 -5.35427 1.43486 1.46532 1.55568 2.52485 2.83635 3.26165 3.65883 3.67870 3.92689 4.09564 4.30113 4.41397 4.46021 4.66640 4.72364 4.74603 4.79691 4.85856 4.91203 4.98794 4.99984 5.05344 5.15352 5.29742 5.30006 5.36728 5.43439 5.47068 5.57349 5.66504 5.71735 5.92589 6.49775 7.21115 7.94113 8.43843 9.16978 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.011709 C = 0.009331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.850504 B = 2390.704146 C = 3000.044199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 N -0.599 5.599 4 C -0.260 4.260 5 H 0.053 0.947 6 C -0.040 4.040 7 N -0.917 5.917 8 Si 0.950 3.050 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.291 1.291 12 C 0.157 3.843 13 C -0.103 4.103 14 H 0.043 0.957 15 C -0.090 4.090 16 C -0.163 4.163 17 H 0.124 0.876 18 C -0.159 4.159 19 C -0.168 4.168 20 H 0.127 0.873 21 C -0.076 4.076 22 H 0.067 0.933 23 H 0.024 0.976 24 H 0.031 0.969 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.249 0.751 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 -5.988 -7.601 11.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.010 3.990 3 N -0.320 5.320 4 C -0.390 4.390 5 H 0.071 0.929 6 C -0.236 4.236 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.212 1.212 10 H -0.200 1.200 11 H -0.218 1.218 12 C 0.031 3.969 13 C -0.124 4.124 14 H 0.061 0.939 15 C -0.128 4.128 16 C -0.181 4.181 17 H 0.142 0.858 18 C -0.196 4.196 19 C -0.185 4.185 20 H 0.145 0.855 21 C -0.114 4.114 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.427 -5.848 -7.604 11.547 hybrid contribution 0.025 0.910 0.903 1.283 sum 6.452 -4.938 -6.701 10.532 Atomic orbital electron populations 1.22165 0.99261 1.00038 0.99780 1.21062 0.92312 0.86341 0.99280 1.44072 1.75114 1.10822 1.01978 1.19254 1.36455 0.91723 0.91606 0.92900 1.25665 0.98343 0.99390 1.00247 1.70104 1.34825 1.09834 1.41409 0.85547 0.79144 0.78011 0.79413 1.21161 1.19980 1.21750 1.20815 0.91512 0.99437 0.85182 1.22534 0.98771 0.95483 0.95603 0.93882 1.21896 0.96853 0.97934 0.96152 1.23165 0.98584 0.96628 0.99684 0.85768 1.23328 0.93534 1.02817 0.99879 1.23634 0.97483 0.94601 1.02832 0.85521 1.21820 0.96082 0.96140 0.97310 0.91431 0.95647 0.94964 0.92311 0.94182 0.94132 0.96015 0.91753 0.91081 0.93130 0.86278 0.90849 0.92951 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.15 10.24 71.98 0.74 -5.41 16 2 C 0.14 5.71 6.18 86.38 0.53 6.25 16 3 N -0.60 -30.03 2.41 -701.99 -1.69 -31.72 16 4 C -0.26 -14.46 9.48 84.04 0.80 -13.66 16 5 H 0.05 2.95 7.93 -2.91 -0.02 2.93 16 6 C -0.04 -2.24 4.95 84.86 0.42 -1.82 16 7 N -0.92 -54.19 11.30 21.65 0.24 -53.94 16 8 Si 0.95 45.44 29.61 68.60 2.03 47.47 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 12 C 0.16 7.44 4.79 86.38 0.41 7.85 16 13 C -0.10 -4.11 2.64 -9.51 -0.03 -4.14 16 14 H 0.04 1.95 7.42 -2.39 -0.02 1.94 16 15 C -0.09 -3.07 6.21 31.67 0.20 -2.87 16 16 C -0.16 -4.45 6.97 -10.07 -0.07 -4.52 16 17 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 18 C -0.16 -4.21 9.94 31.44 0.31 -3.89 16 19 C -0.17 -4.56 7.16 -9.22 -0.07 -4.62 16 20 H 0.13 2.83 8.14 -2.38 -0.02 2.81 16 21 C -0.08 -2.54 4.78 31.66 0.15 -2.39 16 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 2.19 6.30 -2.39 -0.02 2.17 16 26 H 0.04 1.66 8.04 -2.38 -0.02 1.64 16 27 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.02 0.99 7.92 -2.39 -0.02 0.97 16 29 H 0.06 3.56 5.30 -2.39 -0.01 3.55 16 30 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.26 7.27 -2.39 -0.02 2.24 16 34 H 0.05 1.83 7.95 -2.39 -0.02 1.81 16 35 H 0.07 2.18 7.63 -2.39 -0.02 2.16 16 Total: -1.00 -60.78 277.10 5.02 -55.77 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.03 Total: 11.65 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.40 Total: -29.23 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.45 Total: -85.66 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -60.78 5.02 -55.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.138 kcal (2) G-P(sol) polarization free energy of solvation -60.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds