Wall clock time and date at job start Mon Mar 30 2020 03:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99557 * 2 1 4 4 C 1.50697 * 109.46997 * 293.95072 * 3 2 1 5 5 H 1.08004 * 119.99954 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99810 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00001 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99953 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.47336 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47296 * 120.00159 * 8 6 4 11 11 H 1.48503 * 109.47371 * 240.00558 * 8 6 4 12 12 C 1.46900 * 110.99877 * 123.94829 * 2 1 3 13 13 C 1.52997 * 109.46906 * 164.23095 * 12 2 1 14 14 H 1.09005 * 110.67176 * 51.70860 * 13 12 2 15 15 C 1.54892 * 110.76061 * 288.27025 * 13 12 2 16 16 C 1.54265 * 104.19568 * 203.74601 * 15 13 12 17 17 H 1.08999 * 117.75956 * 163.97202 * 16 15 13 18 18 C 1.53000 * 118.19863 * 319.42617 * 16 15 13 19 19 C 1.52992 * 60.37628 * 93.62102 * 18 16 15 20 20 H 1.09000 * 119.75602 * 111.12432 * 19 18 16 21 21 C 1.54269 * 118.20082 * 266.38149 * 19 18 16 22 22 H 1.08996 * 109.47089 * 65.22841 * 1 2 3 23 23 H 1.09005 * 109.47116 * 185.22463 * 1 2 3 24 24 H 1.08999 * 109.47367 * 305.22319 * 1 2 3 25 25 H 1.09000 * 109.47536 * 53.95348 * 3 2 1 26 26 H 1.08999 * 109.46576 * 173.95051 * 3 2 1 27 27 H 0.96996 * 120.00030 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47490 * 284.23028 * 12 2 1 29 29 H 1.09002 * 109.46948 * 44.23532 * 12 2 1 30 30 H 1.08998 * 110.48411 * 322.42256 * 15 13 12 31 31 H 1.08998 * 110.48323 * 85.06228 * 15 13 12 32 32 H 1.09001 * 117.46017 * 346.02070 * 18 16 15 33 33 H 1.09000 * 117.46197 * 201.22036 * 18 16 15 34 34 H 1.09003 * 110.48539 * 281.89647 * 21 19 18 35 35 H 1.08994 * 110.60228 * 159.30277 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7134 4.0013 -0.6158 8 14 1.5837 4.1864 -3.1387 9 1 0.8155 3.2441 -3.9915 10 1 0.7567 5.3879 -2.8602 11 1 2.8257 4.5929 -3.8441 12 6 1.9954 -0.7659 1.1377 13 6 3.4741 -1.0791 0.9010 14 1 4.0249 -0.1716 0.6533 15 6 3.6384 -2.1461 -0.2098 16 6 5.0125 -2.7848 0.0794 17 1 5.2402 -3.7375 -0.3986 18 6 6.1607 -1.8678 0.5058 19 6 5.3013 -2.5494 1.5723 20 1 5.7332 -3.3319 2.1963 21 6 4.0925 -1.7760 2.1384 22 1 -0.3633 0.4306 -0.9331 23 1 -0.3633 -1.0234 0.0936 24 1 -0.3634 0.5927 0.8395 25 1 1.5610 1.9274 0.8309 26 1 3.0796 1.3444 0.1083 27 1 2.9886 4.9171 -0.7781 28 1 1.8898 -0.1796 2.0505 29 1 1.4382 -1.6974 1.2376 30 1 2.8482 -2.8936 -0.1405 31 1 3.6354 -1.6763 -1.1933 32 1 6.0273 -0.7955 0.3625 33 1 7.1768 -2.2371 0.3675 34 1 4.4210 -1.0361 2.8685 35 1 3.3748 -2.4619 2.5882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595348062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:28 Heat of formation + Delta-G solvation = 17.934697 kcal Electronic energy + Delta-G solvation = -14055.368417 eV Core-core repulsion = 11860.570587 eV Total energy + Delta-G solvation = -2194.797829 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.47073 -36.36647 -32.64656 -31.37644 -27.88901 -27.30950 -26.23377 -23.65920 -22.21478 -20.25293 -19.37592 -18.68333 -16.43860 -15.73724 -14.99260 -14.72538 -14.00531 -13.41041 -13.34051 -13.06874 -12.69354 -11.97567 -11.88717 -11.65139 -11.31303 -11.03759 -10.92728 -10.66136 -10.63331 -10.42563 -10.21654 -10.08151 -9.80915 -9.67127 -9.26540 -9.09035 -8.39396 -7.15512 -5.99530 -4.00175 3.32632 3.39950 3.45000 3.93279 4.45426 4.76081 4.84301 5.09567 5.18925 5.35744 5.37054 5.52865 5.77607 5.83916 5.85696 5.99102 6.02872 6.14635 6.16827 6.25328 6.27583 6.33747 6.43786 6.46084 6.57837 6.74423 6.77864 6.91509 7.35827 7.39715 7.85307 8.15460 8.26671 8.61310 9.08113 9.63853 11.11467 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036008 B = 0.007979 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.423340 B = 3508.425844 C = 3836.357980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.191 3.809 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.066 3.934 13 C -0.089 4.089 14 H 0.085 0.915 15 C -0.076 4.076 16 C -0.167 4.167 17 H 0.102 0.898 18 C -0.157 4.157 19 C -0.171 4.171 20 H 0.102 0.898 21 C -0.091 4.091 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.011 0.989 25 H -0.012 1.012 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -11.471 3.697 12.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.066 3.934 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.063 4.063 13 C -0.108 4.108 14 H 0.103 0.897 15 C -0.113 4.113 16 C -0.185 4.185 17 H 0.120 0.880 18 C -0.194 4.194 19 C -0.189 4.189 20 H 0.120 0.880 21 C -0.129 4.129 22 H 0.089 0.911 23 H 0.061 0.939 24 H 0.030 0.970 25 H 0.006 0.994 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.742 -11.530 3.298 12.302 hybrid contribution -0.375 0.955 -0.026 1.027 sum 2.366 -10.575 3.272 11.320 Atomic orbital electron populations 1.22169 0.89043 0.98561 1.01017 1.62102 1.06551 1.17856 1.39976 1.19778 0.95581 0.81639 0.96371 1.21227 1.34473 0.96866 1.01763 0.91889 1.24993 0.95395 0.97398 0.96928 1.69969 1.38555 1.11373 1.34016 0.86470 0.78134 0.79314 0.83677 1.19682 1.21170 1.21039 1.21987 0.94444 0.97200 0.92674 1.22133 0.96003 0.98529 0.94153 0.89708 1.21792 0.92946 0.96777 0.99780 1.23226 0.96573 1.00699 0.98005 0.87978 1.22901 0.94879 0.99565 1.02016 1.23081 1.00519 1.03215 0.92119 0.87987 1.21948 0.94900 0.98374 0.97717 0.91120 0.93941 0.97039 0.99414 0.94977 0.93063 0.95979 0.92455 0.91625 0.90732 0.88567 0.88964 0.91906 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.32 60.06 0.56 1.37 16 2 N -0.54 -11.85 4.63 -244.37 -1.13 -12.99 16 3 C 0.19 5.05 4.57 -4.98 -0.02 5.03 16 4 C -0.50 -14.36 8.58 -34.44 -0.30 -14.66 16 5 H 0.06 1.78 7.10 -52.48 -0.37 1.41 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.07 1.21 4.41 -3.83 -0.02 1.19 16 13 C -0.09 -1.53 2.44 -88.62 -0.22 -1.74 16 14 H 0.08 1.69 5.70 -51.93 -0.30 1.40 16 15 C -0.08 -1.20 6.14 -25.07 -0.15 -1.36 16 16 C -0.17 -2.30 7.06 -89.51 -0.63 -2.93 16 17 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.16 -2.13 9.83 -26.73 -0.26 -2.39 16 19 C -0.17 -2.25 7.06 -89.51 -0.63 -2.88 16 20 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 21 C -0.09 -1.30 6.21 -25.07 -0.16 -1.45 16 22 H 0.07 1.48 7.01 -51.93 -0.36 1.12 16 23 H 0.04 0.71 7.88 -51.93 -0.41 0.30 16 24 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 25 H -0.01 -0.34 8.07 -51.93 -0.42 -0.76 16 26 H 0.03 0.90 6.33 -51.93 -0.33 0.57 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 29 H 0.06 0.94 7.67 -51.93 -0.40 0.54 16 30 H 0.07 0.99 7.93 -51.93 -0.41 0.57 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.10 1.47 7.21 -51.93 -0.37 1.10 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -29.52 277.96 -9.03 -38.55 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.88 Total: -1.97 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.93 Total: -18.38 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.40 Total: -39.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.52 -9.03 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595348062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.487 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds