Wall clock time and date at job start Mon Mar 30 2020 02:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 H 1.08992 * 110.66968 * 308.23900 * 14 13 12 16 16 C 1.54886 * 110.76017 * 184.99831 * 14 13 12 17 17 C 1.54263 * 104.19673 * 203.74509 * 16 14 13 18 18 H 1.09005 * 117.40919 * 163.59455 * 17 16 14 19 19 C 1.52994 * 118.20023 * 318.21764 * 17 16 14 20 20 C 1.53874 * 106.59991 * 23.61307 * 17 16 14 21 21 H 1.08999 * 121.33089 * 138.62994 * 20 17 16 22 22 C 1.54266 * 106.59844 * 359.97438 * 20 17 16 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 28 28 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 29 29 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 30 30 H 1.09005 * 110.48391 * 322.42773 * 16 14 13 31 31 H 1.09001 * 110.48586 * 84.92927 * 16 14 13 32 32 H 1.08996 * 117.46132 * 201.21390 * 19 17 16 33 33 H 1.09000 * 117.46174 * 346.01978 * 19 17 16 34 34 H 1.08998 * 110.48663 * 217.71404 * 22 20 17 35 35 H 1.08997 * 110.48957 * 95.07070 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 1 2.0176 -1.4434 3.7347 16 6 2.5548 0.3708 4.8318 17 6 3.6086 -0.2458 5.7748 18 1 3.9581 0.3670 6.6057 19 6 3.6719 -1.7700 5.8901 20 6 4.5935 -1.0238 4.8846 21 1 5.6679 -0.9914 5.0653 22 6 4.1034 -0.8534 3.4318 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 2.9173 -1.1204 1.0288 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6164 2.5525 30 1 2.8257 1.3948 4.5744 31 1 1.5664 0.3426 5.2905 32 1 4.1417 -2.1877 6.7805 33 1 2.8327 -2.3397 5.4910 34 1 4.2462 -1.7766 2.8703 35 1 4.6242 -0.0271 2.9479 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602606539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:54 Heat of formation + Delta-G solvation = 10.095858 kcal Electronic energy + Delta-G solvation = -13816.820837 eV Core-core repulsion = 11621.683091 eV Total energy + Delta-G solvation = -2195.137747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.50999 -35.85926 -33.03430 -31.08437 -28.24210 -27.87403 -25.34101 -24.32522 -21.85224 -19.91521 -19.33685 -19.03603 -16.64006 -15.64477 -15.26356 -14.79401 -13.83859 -13.52224 -13.20872 -12.87108 -12.78118 -12.08333 -12.02382 -11.35780 -11.26179 -11.01787 -10.85681 -10.75267 -10.52629 -10.31089 -10.15636 -10.04858 -9.93531 -9.73922 -9.42776 -8.78510 -8.45151 -7.20652 -6.00403 -4.06694 3.30619 3.37192 3.41337 3.71711 4.41804 4.56473 4.72758 4.96247 5.10896 5.21202 5.30996 5.54654 5.59752 5.68920 5.74612 5.81376 6.01504 6.03017 6.13603 6.19716 6.26555 6.32276 6.35452 6.57897 6.73031 6.93140 7.17891 7.27899 7.55267 7.80870 7.93872 8.31093 8.44504 8.72819 9.04878 9.59190 11.05984 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.055862 B = 0.006358 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.116352 B = 4402.911961 C = 4712.568073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.689 5.689 13 C 0.070 3.930 14 C -0.092 4.092 15 H 0.082 0.918 16 C -0.092 4.092 17 C -0.166 4.166 18 H 0.102 0.898 19 C -0.158 4.158 20 C -0.167 4.167 21 H 0.105 0.895 22 C -0.092 4.092 23 H 0.003 0.997 24 H 0.080 0.920 25 H 0.031 0.969 26 H 0.260 0.740 27 H 0.329 0.671 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 -1.693 13.288 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.320 5.320 13 C -0.060 4.060 14 C -0.111 4.111 15 H 0.100 0.900 16 C -0.129 4.129 17 C -0.185 4.185 18 H 0.121 0.879 19 C -0.195 4.195 20 C -0.185 4.185 21 H 0.123 0.877 22 C -0.129 4.129 23 H 0.022 0.978 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.985 -1.802 13.289 13.991 hybrid contribution 1.117 0.199 -1.037 1.537 sum 5.102 -1.603 12.252 13.369 Atomic orbital electron populations 1.21706 0.97961 0.99278 0.99268 1.19099 0.92600 0.92286 0.85746 0.98312 1.21279 1.31337 1.12461 0.90516 0.92269 1.24930 0.95061 0.95028 0.99045 1.69904 1.36662 1.22984 1.23400 0.86526 0.78449 0.80082 0.82511 1.20786 1.19843 1.21207 1.60725 1.31990 1.33212 1.06069 1.21862 0.99419 0.93825 0.90933 1.22181 0.95650 0.99008 0.94287 0.89976 1.21954 0.97756 0.98989 0.94245 1.23133 1.00961 0.93674 1.00687 0.87943 1.23265 1.02036 0.93971 1.00246 1.23551 0.96124 1.05937 0.92900 0.87689 1.21976 0.95567 1.01662 0.93699 0.97764 0.90182 0.95010 0.92966 0.85360 0.96398 0.91952 0.91103 0.91678 0.88879 0.88719 0.91198 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.16 0.34 -2.82 16 2 C 0.21 5.46 2.60 -68.87 -0.18 5.28 16 3 H 0.00 -0.02 7.80 -51.92 -0.40 -0.43 16 4 C -0.52 -14.44 8.59 -34.44 -0.30 -14.74 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 N -0.69 -15.04 6.30 -107.95 -0.68 -15.72 16 13 C 0.07 1.28 4.97 -3.82 -0.02 1.26 16 14 C -0.09 -1.38 2.64 -88.64 -0.23 -1.61 16 15 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 16 C -0.09 -1.17 6.21 -25.08 -0.16 -1.33 16 17 C -0.17 -1.93 6.97 -89.51 -0.62 -2.55 16 18 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 19 C -0.16 -1.75 9.94 -25.42 -0.25 -2.01 16 20 C -0.17 -2.01 7.16 -88.19 -0.63 -2.64 16 21 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 22 C -0.09 -1.28 5.65 -25.08 -0.14 -1.42 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.33 7.01 7.61 -39.29 -0.30 6.71 16 28 H 0.02 0.34 7.90 -51.93 -0.41 -0.07 16 29 H 0.06 1.18 7.44 -51.93 -0.39 0.79 16 30 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.10 7.27 -51.93 -0.38 0.72 16 34 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -28.44 277.37 -9.04 -37.49 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.86 Total: 3.74 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.29 Total: -20.95 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.05 Total: -40.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.44 -9.04 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602606539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.584 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds