Wall clock time and date at job start Mon Mar 30 2020 02:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 H 1.08992 * 110.66968 * 308.23900 * 14 13 12 16 16 C 1.54886 * 110.76017 * 184.99831 * 14 13 12 17 17 C 1.54263 * 104.19673 * 203.74509 * 16 14 13 18 18 H 1.09005 * 117.40919 * 163.59455 * 17 16 14 19 19 C 1.52994 * 118.20023 * 318.21764 * 17 16 14 20 20 C 1.53874 * 106.59991 * 23.61307 * 17 16 14 21 21 H 1.08999 * 121.33089 * 138.62994 * 20 17 16 22 22 C 1.54266 * 106.59844 * 359.97438 * 20 17 16 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 28 28 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 29 29 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 30 30 H 1.09005 * 110.48391 * 322.42773 * 16 14 13 31 31 H 1.09001 * 110.48586 * 84.92927 * 16 14 13 32 32 H 1.08996 * 117.46132 * 201.21390 * 19 17 16 33 33 H 1.09000 * 117.46174 * 346.01978 * 19 17 16 34 34 H 1.08998 * 110.48663 * 217.71404 * 22 20 17 35 35 H 1.08997 * 110.48957 * 95.07070 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 1 2.0176 -1.4434 3.7347 16 6 2.5548 0.3708 4.8318 17 6 3.6086 -0.2458 5.7748 18 1 3.9581 0.3670 6.6057 19 6 3.6719 -1.7700 5.8901 20 6 4.5935 -1.0238 4.8846 21 1 5.6679 -0.9914 5.0653 22 6 4.1034 -0.8534 3.4318 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 2.9173 -1.1204 1.0288 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6164 2.5525 30 1 2.8257 1.3948 4.5744 31 1 1.5664 0.3426 5.2905 32 1 4.1417 -2.1877 6.7805 33 1 2.8327 -2.3397 5.4910 34 1 4.2462 -1.7766 2.8703 35 1 4.6242 -0.0271 2.9479 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602606539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:53 Heat of formation + Delta-G solvation = -6.243342 kcal Electronic energy + Delta-G solvation = -13817.529358 eV Core-core repulsion = 11621.683091 eV Total energy + Delta-G solvation = -2195.846268 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.56916 -37.66032 -34.85622 -32.70799 -29.83082 -29.09414 -27.40216 -25.83210 -23.04774 -21.78316 -20.44050 -20.17159 -18.58243 -17.04388 -16.63037 -16.54936 -15.61867 -15.05179 -14.60359 -14.31367 -14.00248 -13.67527 -13.59468 -13.05274 -12.79033 -12.70723 -12.45377 -12.21730 -12.20613 -12.11365 -11.77085 -11.60286 -11.29851 -10.89153 -10.84312 -10.58234 -10.39322 -9.05985 -8.14224 -6.28868 1.41682 1.42899 1.53911 2.41093 2.80919 3.14099 3.55033 3.58052 3.76882 4.01679 4.15282 4.30808 4.49320 4.58428 4.61848 4.75891 4.79598 4.86004 4.92377 4.95798 5.05970 5.06761 5.11627 5.20972 5.21831 5.38457 5.40741 5.44723 5.53201 5.67080 5.85283 6.21123 6.47314 6.77667 7.00128 7.41768 8.91677 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.055862 B = 0.006358 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.116352 B = 4402.911961 C = 4712.568073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.034 1.034 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.275 1.275 10 H -0.268 1.268 11 H -0.282 1.282 12 N -0.686 5.686 13 C 0.072 3.928 14 C -0.086 4.086 15 H 0.077 0.923 16 C -0.090 4.090 17 C -0.163 4.163 18 H 0.122 0.878 19 C -0.151 4.151 20 C -0.174 4.174 21 H 0.120 0.880 22 C -0.093 4.093 23 H 0.020 0.980 24 H 0.057 0.943 25 H 0.028 0.972 26 H 0.263 0.737 27 H 0.332 0.668 28 H 0.010 0.990 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.508 -2.493 14.308 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.016 1.016 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.200 1.200 10 H -0.192 1.192 11 H -0.208 1.208 12 N -0.317 5.317 13 C -0.057 4.057 14 C -0.105 4.105 15 H 0.095 0.905 16 C -0.128 4.128 17 C -0.181 4.181 18 H 0.140 0.860 19 C -0.188 4.188 20 C -0.192 4.192 21 H 0.137 0.863 22 C -0.130 4.130 23 H 0.039 0.961 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.149 0.851 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.797 -2.607 14.332 15.336 hybrid contribution 0.846 0.476 -1.328 1.645 sum 5.643 -2.130 13.004 14.335 Atomic orbital electron populations 1.21536 0.97758 0.98845 0.98969 1.18930 0.92779 0.90676 0.87145 1.01627 1.21594 1.31753 1.12733 0.91649 0.92280 1.25772 0.95112 0.95698 1.02140 1.70032 1.37412 1.24146 1.24215 0.85453 0.78004 0.79033 0.78506 1.20043 1.19198 1.20754 1.60657 1.32170 1.33425 1.05428 1.21903 0.99126 0.93563 0.91136 1.22060 0.96135 0.98748 0.93544 0.90496 1.21928 0.98881 0.98532 0.93442 1.23177 0.99945 0.94271 1.00722 0.86038 1.23369 1.01405 0.93552 1.00465 1.23542 0.97104 1.07144 0.91452 0.86257 1.21923 0.94743 1.00955 0.95377 0.96056 0.92444 0.95301 0.92796 0.85080 0.97157 0.92591 0.91139 0.90964 0.86632 0.89497 0.91949 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 9.19 71.98 0.66 -5.18 16 2 C 0.21 11.29 2.60 44.17 0.11 11.41 16 3 H -0.03 -1.98 7.80 -2.38 -0.02 -2.00 16 4 C -0.54 -30.36 8.59 25.60 0.22 -30.14 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 8 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 N -0.69 -30.23 6.30 -495.44 -3.12 -33.35 16 13 C 0.07 2.68 4.97 86.30 0.43 3.11 16 14 C -0.09 -2.50 2.64 -9.51 -0.03 -2.53 16 15 H 0.08 2.34 7.42 -2.39 -0.02 2.32 16 16 C -0.09 -2.15 6.21 31.67 0.20 -1.96 16 17 C -0.16 -3.33 6.97 -10.07 -0.07 -3.40 16 18 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 19 C -0.15 -2.92 9.94 31.44 0.31 -2.61 16 20 C -0.17 -3.80 7.16 -9.22 -0.07 -3.86 16 21 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 22 C -0.09 -2.50 5.65 31.66 0.18 -2.32 16 23 H 0.02 0.98 7.45 -2.39 -0.02 0.96 16 24 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 25 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.33 14.26 7.61 -89.70 -0.68 13.58 16 28 H 0.01 0.40 7.90 -2.39 -0.02 0.38 16 29 H 0.06 2.12 7.44 -2.39 -0.02 2.11 16 30 H 0.07 1.70 8.05 -2.38 -0.02 1.68 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.83 7.27 -2.39 -0.02 1.82 16 34 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.06 1.76 7.93 -2.39 -0.02 1.74 16 Total: -1.00 -60.10 277.37 1.92 -58.18 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.37 Total: 19.17 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 2.40 Total: -36.36 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -2.88 Total: -86.96 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -60.10 1.92 -58.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602606539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.937 kcal (2) G-P(sol) polarization free energy of solvation -60.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds