Wall clock time and date at job start Mon Mar 30 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 112.95985 * 2 1 4 4 C 1.53934 * 113.76203 * 228.35459 * 2 1 3 5 5 H 1.09002 * 113.73051 * 336.31512 * 4 2 1 6 6 C 1.52992 * 113.73425 * 107.49831 * 4 2 1 7 7 C 1.53938 * 86.34106 * 221.96388 * 4 2 1 8 8 N 1.47961 * 113.75990 * 131.78777 * 2 1 3 9 9 C 1.46896 * 111.00439 * 251.90131 * 8 2 1 10 10 C 1.53004 * 109.47184 * 170.00019 * 9 8 2 11 11 C 1.50698 * 115.54952 * 34.33349 * 10 9 8 12 12 H 1.08005 * 119.99815 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00118 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99899 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00107 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47386 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47183 * 120.00059 * 15 13 11 18 18 H 1.48507 * 109.47092 * 239.99495 * 15 13 11 19 19 C 1.53003 * 117.49659 * 248.62238 * 10 9 8 20 20 C 1.52994 * 60.00044 * 252.50949 * 19 10 9 21 21 H 1.09002 * 109.47153 * 191.64580 * 1 2 3 22 22 H 1.09001 * 109.46832 * 71.64771 * 1 2 3 23 23 H 1.09004 * 109.47261 * 311.64752 * 1 2 3 24 24 H 1.08999 * 109.47583 * 60.00255 * 6 4 2 25 25 H 1.09009 * 109.47169 * 180.02562 * 6 4 2 26 26 H 1.09002 * 109.47377 * 299.99973 * 6 4 2 27 27 H 1.09002 * 113.76136 * 138.03878 * 7 4 2 28 28 H 1.09008 * 113.75388 * 269.40063 * 7 4 2 29 29 H 1.08998 * 109.47132 * 290.00099 * 9 8 2 30 30 H 1.09000 * 109.47018 * 50.00013 * 9 8 2 31 31 H 0.97005 * 120.00299 * 180.02562 * 14 13 11 32 32 H 1.08998 * 117.50201 * 0.02562 * 19 10 9 33 33 H 1.09003 * 117.49342 * 145.02234 * 19 10 9 34 34 H 1.09000 * 117.50630 * 252.51185 * 20 19 10 35 35 H 1.09002 * 117.49534 * 107.48853 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9552 1.0036 0.0000 4 6 2.1502 -0.9362 -1.0528 5 1 1.4906 -1.7472 -1.3616 6 6 2.7838 -0.1998 -2.2348 7 6 3.1561 -1.3382 0.0410 8 7 2.1261 -0.9024 1.0097 9 6 2.7282 -0.1372 2.1097 10 6 3.1088 -1.0897 3.2450 11 6 3.5748 -2.4575 2.8172 12 1 3.6216 -2.7082 1.7677 13 6 3.9402 -3.3892 3.7655 14 7 3.8827 -3.0840 5.0435 15 14 4.5170 -5.0849 3.2353 16 1 4.4904 -5.1759 1.7534 17 1 5.9021 -5.3109 3.7208 18 1 3.6166 -6.1164 3.8104 19 6 2.3132 -0.9893 4.5480 20 6 3.7551 -0.4810 4.4911 21 1 -0.3633 -1.0065 0.2074 22 1 -0.3633 0.3236 -0.9754 23 1 -0.3634 0.6830 0.7679 24 1 3.5785 0.4525 -1.8728 25 1 3.1991 -0.9252 -2.9344 26 1 2.0248 0.3979 -2.7395 27 1 3.3654 -2.4075 0.0736 28 1 4.0582 -0.7264 0.0542 29 1 3.6208 0.3747 1.7502 30 1 2.0111 0.5971 2.4765 31 1 4.1401 -3.7393 5.7108 32 1 1.5183 -0.2451 4.5963 33 1 2.1265 -1.9129 5.0960 34 1 4.5171 -1.0699 5.0016 35 1 3.9091 0.5981 4.5020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602830220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:41 Heat of formation + Delta-G solvation = 61.680920 kcal Electronic energy + Delta-G solvation = -14396.962787 eV Core-core repulsion = 12204.061936 eV Total energy + Delta-G solvation = -2192.900851 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67590 -36.23633 -31.81155 -30.93091 -29.95300 -26.76919 -25.56274 -23.01410 -21.79466 -20.55862 -19.09074 -18.66320 -15.96271 -15.18635 -14.80519 -14.52012 -14.18740 -13.41658 -13.05483 -12.65777 -12.59787 -12.32073 -11.82608 -11.32519 -11.15636 -11.05974 -10.99706 -10.81138 -10.47143 -10.20066 -9.98798 -9.86609 -9.59306 -9.28340 -8.68289 -8.22653 -7.98176 -7.79311 -5.83343 -3.85559 3.33460 3.41728 3.44856 4.48341 4.51101 4.78935 5.07479 5.22057 5.56193 5.61783 5.73194 5.75213 5.79373 5.93702 6.00795 6.07837 6.14678 6.18923 6.28513 6.40787 6.44586 6.50728 6.59160 6.76977 6.89532 7.09102 7.17736 7.32301 7.48300 7.78368 7.96296 8.17668 8.34524 8.66787 9.10662 9.67775 11.13503 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.010789 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.116154 B = 2594.561571 C = 3143.398639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.019 3.981 3 H 0.066 0.934 4 C -0.123 4.123 5 H 0.093 0.907 6 C -0.141 4.141 7 C 0.021 3.979 8 N -0.447 5.447 9 C 0.069 3.931 10 C 0.027 3.973 11 C -0.456 4.456 12 H 0.072 0.928 13 C 0.051 3.949 14 N -0.885 5.885 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.287 1.287 18 H -0.286 1.286 19 C -0.185 4.185 20 C -0.194 4.194 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.049 0.951 31 H 0.255 0.745 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 5.148 -10.180 11.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.084 0.916 4 C -0.142 4.142 5 H 0.111 0.889 6 C -0.199 4.199 7 C -0.107 4.107 8 N -0.169 5.169 9 C -0.059 4.059 10 C 0.027 3.973 11 C -0.494 4.494 12 H 0.090 0.910 13 C -0.148 4.148 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.214 1.214 18 H -0.212 1.212 19 C -0.223 4.223 20 C -0.233 4.233 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.158 4.577 -9.651 11.138 hybrid contribution 0.870 -0.169 -0.202 0.909 sum -2.287 4.408 -9.852 11.033 Atomic orbital electron populations 1.21540 0.94173 1.02534 1.00324 1.23525 0.96235 0.95655 0.93637 0.91649 1.23127 0.98541 0.98602 0.93940 0.88850 1.21741 1.00239 0.99990 0.97930 1.23940 0.93712 1.02480 0.90607 1.68537 1.19865 1.25352 1.03116 1.22138 0.95575 0.94756 0.93439 1.18874 0.99499 0.94387 0.84582 1.20833 1.40144 0.94978 0.93412 0.91015 1.25041 0.96178 0.98552 0.95077 1.70044 1.48718 1.33894 0.99787 0.86524 0.78062 0.84643 0.78673 1.19822 1.21375 1.21245 1.22800 0.91629 1.01409 1.06459 1.22837 0.98127 0.94984 1.07333 0.91619 0.92929 0.93208 0.92916 0.92707 0.92867 0.89197 0.91971 0.95557 0.93283 0.93490 0.94393 0.87435 0.87293 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.95 37.16 0.37 -1.44 16 2 C 0.02 0.30 3.49 -66.66 -0.23 0.07 16 3 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 4 C -0.12 -1.80 4.11 -89.69 -0.37 -2.17 16 5 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 6 C -0.14 -1.67 9.73 37.15 0.36 -1.31 16 7 C 0.02 0.38 6.02 -2.76 -0.02 0.37 16 8 N -0.45 -8.92 5.49 -230.33 -1.26 -10.18 16 9 C 0.07 1.50 5.02 -3.82 -0.02 1.48 16 10 C 0.03 0.70 2.52 -155.66 -0.39 0.31 16 11 C -0.46 -12.51 8.57 -34.44 -0.30 -12.80 16 12 H 0.07 1.91 4.47 -52.48 -0.23 1.67 16 13 C 0.05 1.43 5.28 -17.82 -0.09 1.33 16 14 N -0.88 -25.33 8.59 55.43 0.48 -24.86 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 C -0.19 -4.84 9.31 -26.73 -0.25 -5.09 16 20 C -0.19 -5.02 9.38 -26.73 -0.25 -5.27 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.62 7.94 -51.93 -0.41 0.21 16 25 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.75 6.66 -51.93 -0.35 1.41 16 28 H 0.06 1.10 7.30 -51.92 -0.38 0.73 16 29 H 0.03 0.55 7.38 -51.93 -0.38 0.17 16 30 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.04 0.91 8.05 -51.93 -0.42 0.50 16 33 H 0.11 3.09 6.28 -51.93 -0.33 2.77 16 34 H 0.11 3.08 6.28 -51.93 -0.33 2.75 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 273.65 15.07 4.12 4.12 Total: -1.00 -28.63 273.65 -8.61 -37.23 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.73 Total: 1.66 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -1.19 Total: -24.52 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.79 Total: -35.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.63 -8.61 -37.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602830220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.914 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds