Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47304 * 2 1 4 4 C 1.50703 * 109.47134 * 120.00002 * 2 1 3 5 5 H 1.08007 * 120.00055 * 119.99934 * 4 2 1 6 6 C 1.37872 * 120.00022 * 300.00264 * 4 2 1 7 7 N 1.31512 * 120.00217 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47377 * 59.99846 * 8 6 4 10 10 H 1.48507 * 109.46988 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47397 * 299.99495 * 8 6 4 12 12 N 1.46902 * 109.47140 * 239.99643 * 2 1 3 13 13 C 1.46903 * 110.99723 * 154.22857 * 12 2 1 14 14 C 1.51852 * 108.65179 * 276.94504 * 13 12 2 15 15 C 1.53113 * 110.72705 * 172.26488 * 14 13 12 16 16 C 1.51377 * 108.47859 * 85.91997 * 15 14 13 17 17 C 1.29521 * 120.35956 * 288.07024 * 16 15 14 18 18 C 1.51373 * 120.36193 * 0.02562 * 17 16 15 19 19 C 1.51850 * 108.64837 * 152.98296 * 13 12 2 20 20 H 1.09001 * 109.47321 * 305.97271 * 1 2 3 21 21 H 1.08996 * 109.47142 * 65.97151 * 1 2 3 22 22 H 1.09002 * 109.47156 * 185.97586 * 1 2 3 23 23 H 0.96995 * 120.00484 * 180.02562 * 7 6 4 24 24 H 1.00893 * 111.00446 * 278.18419 * 12 2 1 25 25 H 1.08997 * 108.60561 * 34.95926 * 13 12 2 26 26 H 1.09006 * 109.21747 * 292.72770 * 14 13 12 27 27 H 1.09003 * 109.22206 * 52.07135 * 14 13 12 28 28 H 1.08999 * 109.68972 * 326.21803 * 15 14 13 29 29 H 1.08997 * 109.67315 * 205.61192 * 15 14 13 30 30 H 1.08000 * 119.81616 * 108.09172 * 16 15 14 31 31 H 1.08003 * 119.81966 * 180.02562 * 17 16 15 32 32 H 1.08996 * 109.61528 * 312.16678 * 18 17 16 33 33 H 1.09000 * 109.61687 * 191.64099 * 18 17 16 34 34 H 1.09003 * 109.21949 * 307.92148 * 19 13 12 35 35 H 1.08999 * 109.22274 * 67.31606 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1211 4.0082 10 1 1.8268 -0.4200 5.2205 11 1 1.8257 -2.5203 4.0078 12 7 2.0197 -0.6926 -1.1994 13 6 3.3595 -0.2185 -1.5708 14 6 3.2158 1.0579 -2.3808 15 6 4.5841 1.6980 -2.6308 16 6 5.1889 1.0694 -3.8680 17 6 5.6288 -0.1484 -3.8352 18 6 5.5432 -0.9587 -2.5595 19 6 4.0793 -1.3302 -2.3138 20 1 -0.3634 0.6036 0.8317 21 1 -0.3633 0.4184 -0.9386 22 1 -0.3633 -1.0221 0.1070 23 1 0.7094 1.1617 3.4844 24 1 2.0138 -1.6928 -1.0672 25 1 3.9135 0.0074 -0.6597 26 1 2.7459 0.8255 -3.3364 27 1 2.5872 1.7610 -1.8341 28 1 5.2348 1.5201 -1.7746 29 1 4.4648 2.7702 -2.7863 30 1 5.2543 1.6397 -4.7828 31 1 6.0591 -0.5881 -4.7229 32 1 5.9153 -0.3660 -1.7239 33 1 6.1387 -1.8660 -2.6616 34 1 4.0355 -2.2443 -1.7218 35 1 3.5870 -1.4990 -3.2716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642848240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = -2.497522 kcal Electronic energy + Delta-G solvation = -14229.034021 eV Core-core repulsion = 12033.350184 eV Total energy + Delta-G solvation = -2195.683837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.56352 -35.41372 -32.74883 -31.47646 -30.49390 -27.41578 -25.02884 -23.65877 -23.60856 -19.91434 -19.57705 -17.75224 -16.49507 -15.95910 -14.96386 -14.62209 -13.88548 -13.57978 -13.00805 -12.70598 -12.57615 -12.17079 -11.81116 -11.37267 -11.25031 -11.02885 -10.97438 -10.83827 -10.46107 -10.22692 -10.09867 -10.02864 -9.78386 -9.65609 -9.03594 -8.73298 -8.37903 -7.20751 -5.97685 -4.09430 2.52227 3.28931 3.34061 3.36359 4.41112 4.95586 5.13600 5.18149 5.29903 5.44954 5.49946 5.66640 5.81834 5.89341 5.95215 6.14260 6.23856 6.31626 6.35406 6.60154 6.65311 6.73104 6.94322 6.95928 7.00265 7.14239 7.19193 7.36842 7.57763 7.78010 8.10974 8.22497 8.37792 8.72190 9.04124 9.58034 11.03875 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.038963 B = 0.008466 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.451067 B = 3306.437906 C = 3557.522492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.208 3.792 3 H 0.033 0.967 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.693 5.693 13 C 0.093 3.907 14 C -0.096 4.096 15 C -0.093 4.093 16 C -0.153 4.153 17 C -0.162 4.162 18 C -0.089 4.089 19 C -0.111 4.111 20 H 0.076 0.924 21 H 0.013 0.987 22 H 0.024 0.976 23 H 0.261 0.739 24 H 0.327 0.673 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.946 -0.826 -9.372 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.100 3.900 3 H 0.050 0.950 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.323 5.323 13 C -0.018 4.018 14 C -0.134 4.134 15 C -0.131 4.131 16 C -0.171 4.171 17 C -0.180 4.180 18 C -0.127 4.127 19 C -0.149 4.149 20 H 0.095 0.905 21 H 0.032 0.968 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.144 0.856 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.506 -0.274 -9.652 11.643 hybrid contribution 0.874 -0.905 1.598 2.034 sum 7.380 -1.179 -8.054 10.987 Atomic orbital electron populations 1.21673 0.97967 0.99599 0.98902 1.19161 0.92218 0.94135 0.84513 0.94952 1.21819 1.31788 1.12701 0.91990 0.93015 1.24929 0.94868 0.94868 0.98881 1.69886 1.36424 1.22727 1.23494 0.86727 0.79138 0.79898 0.82622 1.20419 1.21226 1.20308 1.60985 1.22219 1.09370 1.39683 1.20965 0.90758 0.93510 0.96525 1.21257 0.94979 0.96940 1.00235 1.20871 0.97314 0.99036 0.95892 1.22571 0.99232 0.96562 0.98767 1.22494 1.01071 0.95930 0.98470 1.20788 0.97088 0.98967 0.95891 1.21459 0.94202 0.98365 1.00842 0.90511 0.96810 0.95672 0.92890 0.85634 0.93985 0.92219 0.91617 0.91198 0.91977 0.88093 0.88122 0.91083 0.92062 0.92199 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.20 37.16 0.34 -2.74 16 2 C 0.21 5.26 2.31 -68.86 -0.16 5.10 16 3 H 0.03 0.90 6.89 -51.93 -0.36 0.54 16 4 C -0.54 -14.87 8.27 -34.44 -0.28 -15.16 16 5 H 0.05 1.40 7.73 -52.48 -0.41 1.00 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.44 11.39 55.43 0.63 -24.81 16 8 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.69 -14.92 6.02 -102.19 -0.62 -15.54 16 13 C 0.09 1.75 1.89 -68.88 -0.13 1.62 16 14 C -0.10 -1.67 5.12 -27.26 -0.14 -1.81 16 15 C -0.09 -1.37 5.63 -27.49 -0.15 -1.52 16 16 C -0.15 -2.01 9.34 -35.28 -0.33 -2.34 16 17 C -0.16 -2.08 9.34 -35.28 -0.33 -2.41 16 18 C -0.09 -1.23 5.61 -27.54 -0.15 -1.39 16 19 C -0.11 -1.75 4.96 -27.31 -0.14 -1.89 16 20 H 0.08 2.08 6.25 -51.93 -0.32 1.75 16 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.33 6.95 7.79 -39.30 -0.31 6.65 16 25 H 0.04 0.91 7.34 -51.93 -0.38 0.53 16 26 H 0.06 1.02 7.86 -51.93 -0.41 0.62 16 27 H 0.07 1.27 7.10 -51.93 -0.37 0.90 16 28 H 0.07 1.07 6.68 -51.93 -0.35 0.72 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.10 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.07 1.03 6.68 -51.93 -0.35 0.69 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.06 0.99 7.85 -51.93 -0.41 0.58 16 LS Contribution 272.31 15.07 4.10 4.10 Total: -1.00 -27.82 272.31 -8.21 -36.02 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.74 Total: 4.65 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -1.57 Total: -20.76 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.02 Total: -40.35 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.82 -8.21 -36.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642848240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.525 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds