Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47304 * 2 1 4 4 C 1.50703 * 109.47134 * 120.00002 * 2 1 3 5 5 H 1.08007 * 120.00055 * 119.99934 * 4 2 1 6 6 C 1.37872 * 120.00022 * 300.00264 * 4 2 1 7 7 N 1.31512 * 120.00217 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47377 * 59.99846 * 8 6 4 10 10 H 1.48507 * 109.46988 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47397 * 299.99495 * 8 6 4 12 12 N 1.46902 * 109.47140 * 239.99643 * 2 1 3 13 13 C 1.46903 * 110.99723 * 154.22857 * 12 2 1 14 14 C 1.51852 * 108.65179 * 276.94504 * 13 12 2 15 15 C 1.53113 * 110.72705 * 172.26488 * 14 13 12 16 16 C 1.51377 * 108.47859 * 85.91997 * 15 14 13 17 17 C 1.29521 * 120.35956 * 288.07024 * 16 15 14 18 18 C 1.51373 * 120.36193 * 0.02562 * 17 16 15 19 19 C 1.51850 * 108.64837 * 152.98296 * 13 12 2 20 20 H 1.09001 * 109.47321 * 305.97271 * 1 2 3 21 21 H 1.08996 * 109.47142 * 65.97151 * 1 2 3 22 22 H 1.09002 * 109.47156 * 185.97586 * 1 2 3 23 23 H 0.96995 * 120.00484 * 180.02562 * 7 6 4 24 24 H 1.00893 * 111.00446 * 278.18419 * 12 2 1 25 25 H 1.08997 * 108.60561 * 34.95926 * 13 12 2 26 26 H 1.09006 * 109.21747 * 292.72770 * 14 13 12 27 27 H 1.09003 * 109.22206 * 52.07135 * 14 13 12 28 28 H 1.08999 * 109.68972 * 326.21803 * 15 14 13 29 29 H 1.08997 * 109.67315 * 205.61192 * 15 14 13 30 30 H 1.08000 * 119.81616 * 108.09172 * 16 15 14 31 31 H 1.08003 * 119.81966 * 180.02562 * 17 16 15 32 32 H 1.08996 * 109.61528 * 312.16678 * 18 17 16 33 33 H 1.09000 * 109.61687 * 191.64099 * 18 17 16 34 34 H 1.09003 * 109.21949 * 307.92148 * 19 13 12 35 35 H 1.08999 * 109.22274 * 67.31606 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1211 4.0082 10 1 1.8268 -0.4200 5.2205 11 1 1.8257 -2.5203 4.0078 12 7 2.0197 -0.6926 -1.1994 13 6 3.3595 -0.2185 -1.5708 14 6 3.2158 1.0579 -2.3808 15 6 4.5841 1.6980 -2.6308 16 6 5.1889 1.0694 -3.8680 17 6 5.6288 -0.1484 -3.8352 18 6 5.5432 -0.9587 -2.5595 19 6 4.0793 -1.3302 -2.3138 20 1 -0.3634 0.6036 0.8317 21 1 -0.3633 0.4184 -0.9386 22 1 -0.3633 -1.0221 0.1070 23 1 0.7094 1.1617 3.4844 24 1 2.0138 -1.6928 -1.0672 25 1 3.9135 0.0074 -0.6597 26 1 2.7459 0.8255 -3.3364 27 1 2.5872 1.7610 -1.8341 28 1 5.2348 1.5201 -1.7746 29 1 4.4648 2.7702 -2.7863 30 1 5.2543 1.6397 -4.7828 31 1 6.0591 -0.5881 -4.7229 32 1 5.9153 -0.3660 -1.7239 33 1 6.1387 -1.8660 -2.6616 34 1 4.0355 -2.2443 -1.7218 35 1 3.5870 -1.4990 -3.2716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642848240.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = -18.701160 kcal Electronic energy + Delta-G solvation = -14229.736663 eV Core-core repulsion = 12033.350184 eV Total energy + Delta-G solvation = -2196.386479 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.93306 -37.11972 -34.58450 -32.72230 -32.22469 -29.10424 -27.17565 -24.99113 -24.91640 -21.89255 -21.04682 -18.89263 -18.50640 -17.15565 -16.82907 -16.30418 -15.41767 -15.16173 -14.44680 -14.36266 -13.92266 -13.79430 -13.37512 -13.21505 -12.91445 -12.82977 -12.47735 -12.38666 -12.18718 -12.07834 -11.80267 -11.51397 -11.21916 -11.17197 -11.04950 -10.52082 -9.85285 -9.06856 -8.08406 -6.29714 1.37811 1.38443 1.46316 1.50153 2.38666 3.13018 3.56471 3.83439 3.99949 4.29588 4.32630 4.37674 4.56582 4.62046 4.69203 4.82454 4.86648 4.96308 5.00418 5.11852 5.15923 5.24226 5.31063 5.35801 5.36873 5.48351 5.55596 5.68475 5.85536 6.03914 6.13037 6.17563 6.38971 6.82760 7.01795 7.41933 8.90188 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.038963 B = 0.008466 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.451067 B = 3306.437906 C = 3557.522492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H 0.001 0.999 4 C -0.559 4.559 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.688 5.688 13 C 0.095 3.905 14 C -0.091 4.091 15 C -0.091 4.091 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.089 4.089 19 C -0.103 4.103 20 H 0.053 0.947 21 H 0.027 0.973 22 H 0.024 0.976 23 H 0.263 0.737 24 H 0.329 0.671 25 H 0.008 0.992 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 -1.788 -10.438 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.598 4.598 5 H 0.068 0.932 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.317 5.317 13 C -0.015 4.015 14 C -0.129 4.129 15 C -0.128 4.128 16 C -0.176 4.176 17 C -0.176 4.176 18 C -0.127 4.127 19 C -0.141 4.141 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.146 0.854 25 H 0.027 0.973 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.722 -1.242 -10.732 13.280 hybrid contribution 0.489 -0.586 1.913 2.060 sum 8.211 -1.828 -8.819 12.187 Atomic orbital electron populations 1.21520 0.97792 0.99131 0.98662 1.18931 0.92337 0.92639 0.85571 0.98142 1.22095 1.31848 1.12781 0.93045 0.93182 1.25707 0.95057 0.95583 1.01860 1.70015 1.37264 1.23876 1.24165 0.85707 0.78629 0.78921 0.78959 1.19963 1.20767 1.19563 1.60949 1.24030 1.09222 1.37509 1.21064 0.89184 0.95378 0.95877 1.21181 0.96470 0.95656 0.99566 1.20803 0.95447 0.99812 0.96778 1.22642 0.99402 0.97019 0.98578 1.22675 1.00582 0.95633 0.98669 1.20781 0.95582 1.00094 0.96249 1.21380 0.95448 0.96778 1.00526 0.92806 0.95364 0.95631 0.92832 0.85395 0.97338 0.91617 0.94538 0.92290 0.90753 0.85762 0.85464 0.92365 0.89815 0.92346 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.73 9.20 71.98 0.66 -5.07 16 2 C 0.21 11.13 2.31 44.17 0.10 11.23 16 3 H 0.00 0.04 6.89 -2.39 -0.02 0.02 16 4 C -0.56 -31.00 8.27 25.60 0.21 -30.79 16 5 H 0.05 2.73 7.73 -2.91 -0.02 2.71 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -53.36 11.39 21.44 0.24 -53.11 16 8 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.69 -29.90 6.02 -477.21 -2.87 -32.77 16 13 C 0.09 3.62 1.89 44.16 0.08 3.70 16 14 C -0.09 -3.17 5.12 30.25 0.16 -3.01 16 15 C -0.09 -2.59 5.63 30.10 0.17 -2.42 16 16 C -0.16 -3.73 9.34 27.37 0.26 -3.47 16 17 C -0.16 -3.54 9.34 27.37 0.26 -3.28 16 18 C -0.09 -2.26 5.61 30.07 0.17 -2.09 16 19 C -0.10 -3.13 4.96 30.22 0.15 -2.98 16 20 H 0.05 2.97 6.25 -2.39 -0.01 2.96 16 21 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.33 13.97 7.79 -89.70 -0.70 13.27 16 25 H 0.01 0.38 7.34 -2.39 -0.02 0.36 16 26 H 0.07 2.20 7.86 -2.38 -0.02 2.18 16 27 H 0.04 1.46 7.10 -2.39 -0.02 1.44 16 28 H 0.06 1.80 6.68 -2.39 -0.02 1.79 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.06 1.64 6.68 -2.39 -0.02 1.62 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.77 7.89 -2.39 -0.02 1.76 16 35 H 0.07 2.07 7.85 -2.39 -0.02 2.05 16 Total: -1.00 -59.53 272.31 2.41 -57.12 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.35 Total: 19.59 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 2.66 Total: -36.74 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.63 Total: -85.89 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -59.53 2.41 -57.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642848240.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.422 kcal (2) G-P(sol) polarization free energy of solvation -59.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds