Wall clock time and date at job start Mon Mar 30 2020 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46976 * 2 1 4 4 C 1.50695 * 109.47298 * 119.99595 * 2 1 3 5 5 H 1.08004 * 119.99635 * 119.99896 * 4 2 1 6 6 C 1.37876 * 120.00440 * 300.00613 * 4 2 1 7 7 N 1.31516 * 119.99650 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00096 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47130 * 60.00062 * 8 6 4 10 10 H 1.48502 * 109.47176 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47466 * 299.99796 * 8 6 4 12 12 N 1.46900 * 109.47536 * 240.00507 * 2 1 3 13 13 C 1.46893 * 111.00302 * 84.99564 * 12 2 1 14 14 C 1.53953 * 113.58025 * 155.00521 * 13 12 2 15 15 C 1.52903 * 86.78369 * 139.33775 * 14 13 12 16 16 C 1.52910 * 121.14315 * 209.37282 * 15 14 13 17 17 C 1.53950 * 86.78717 * 209.38472 * 16 15 14 18 18 C 1.52917 * 121.13601 * 100.81371 * 15 14 13 19 19 C 1.52905 * 88.04187 * 335.09639 * 15 14 13 20 20 H 1.08996 * 109.47262 * 60.00328 * 1 2 3 21 21 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47244 * 299.99951 * 1 2 3 23 23 H 0.97002 * 119.99799 * 180.02562 * 7 6 4 24 24 H 1.00897 * 110.99942 * 208.95563 * 12 2 1 25 25 H 1.08996 * 112.88052 * 23.86005 * 13 12 2 26 26 H 1.08997 * 113.66155 * 24.86438 * 14 13 12 27 27 H 1.09003 * 113.74418 * 253.82134 * 14 13 12 28 28 H 1.09007 * 113.65999 * 323.86104 * 16 15 14 29 29 H 1.09002 * 113.66292 * 94.90614 * 16 15 14 30 30 H 1.09001 * 113.57502 * 270.13001 * 17 16 15 31 31 H 1.08998 * 113.58006 * 139.33297 * 17 16 15 32 32 H 1.09001 * 113.65915 * 265.09556 * 18 15 14 33 33 H 1.08997 * 113.66386 * 36.05279 * 18 15 14 34 34 H 1.09007 * 113.66063 * 139.37650 * 19 15 14 35 35 H 1.08999 * 113.66512 * 270.43076 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9426 0.8296 2.6034 8 14 2.3214 -1.1202 4.0079 9 1 3.8064 -1.1207 4.0081 10 1 1.8270 -0.4198 5.2204 11 1 1.8260 -2.5201 4.0078 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3468 14 6 3.1045 -0.2011 -3.4174 15 6 2.0624 0.2182 -4.4548 16 6 1.9954 -0.4560 -5.8256 17 6 1.4485 0.8802 -6.3598 18 6 2.1635 1.5613 -5.1788 19 6 0.9863 -0.0310 -3.3976 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7085 1.1612 3.4844 24 1 2.9173 -1.1204 -1.0287 25 1 2.1692 1.2681 -2.0509 26 1 3.3182 -1.2699 -3.4193 27 1 4.0060 0.4115 -3.4305 28 1 2.9719 -0.7223 -6.2304 29 1 1.2770 -1.2743 -5.8760 30 1 0.3621 0.9560 -6.3142 31 1 1.8523 1.1587 -7.3332 32 1 1.5794 2.3547 -4.7124 33 1 3.1872 1.8630 -5.4004 34 1 0.1948 0.7185 -3.3938 35 1 0.6047 -1.0520 -3.3939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642858524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:04 Heat of formation + Delta-G solvation = 31.602635 kcal Electronic energy + Delta-G solvation = -13956.575918 eV Core-core repulsion = 11762.370775 eV Total energy + Delta-G solvation = -2194.205143 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.09068 -36.00686 -33.71938 -31.38477 -27.68577 -25.65900 -25.50482 -24.97528 -23.16195 -20.32085 -19.56618 -17.63781 -16.37365 -15.32002 -15.07427 -14.94889 -14.54328 -13.72992 -13.04686 -12.54938 -12.44265 -12.23289 -11.74227 -11.61715 -11.28318 -11.02369 -10.87356 -10.67471 -10.50784 -10.36770 -10.17072 -10.08066 -9.85401 -9.68562 -9.34727 -8.73701 -8.42999 -7.22538 -5.99174 -4.05724 3.32802 3.37088 3.39972 4.42506 4.63653 4.67023 4.81733 4.92084 5.18281 5.31434 5.39815 5.59168 5.63002 5.74854 5.79553 5.88991 5.96320 6.10451 6.13416 6.26351 6.30146 6.39202 6.51724 6.77453 6.88498 6.97942 7.22106 7.30935 7.59342 7.82237 7.95489 8.32321 8.47354 8.74351 9.06030 9.60114 11.06962 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.073405 B = 0.006349 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.356065 B = 4408.741640 C = 4550.871682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.677 5.677 13 C 0.070 3.930 14 C -0.132 4.132 15 C -0.106 4.106 16 C -0.127 4.127 17 C -0.139 4.139 18 C -0.119 4.119 19 C -0.098 4.098 20 H 0.005 0.995 21 H 0.029 0.971 22 H 0.078 0.922 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 0.075 -13.573 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.308 5.308 13 C -0.042 4.042 14 C -0.170 4.170 15 C -0.107 4.107 16 C -0.164 4.164 17 C -0.176 4.176 18 C -0.156 4.156 19 C -0.136 4.136 20 H 0.024 0.976 21 H 0.048 0.952 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.323 -0.050 -13.570 13.634 hybrid contribution 1.042 0.140 1.144 1.554 sum 2.366 0.090 -12.426 12.649 Atomic orbital electron populations 1.21685 0.97944 0.99171 0.99256 1.19165 0.92661 0.92145 0.85733 0.98257 1.21266 1.31400 1.12478 0.90613 0.92354 1.24924 0.95073 0.95012 0.99019 1.69896 1.36638 1.22936 1.23485 0.86590 0.79041 0.79793 0.82130 1.20370 1.21322 1.20213 1.60813 1.31565 1.32398 1.06051 1.22904 0.95010 0.95595 0.90642 1.23075 0.96492 1.01249 0.96179 1.22348 0.99240 0.96536 0.92532 1.22725 1.00815 0.96684 0.96218 1.22794 1.00207 0.97113 0.97490 1.22642 1.00511 0.96011 0.96438 1.22768 0.95627 1.01800 0.93418 0.97637 0.95155 0.90326 0.92926 0.85072 0.92099 0.89739 0.92298 0.90503 0.91615 0.90395 0.92021 0.91516 0.90311 0.92429 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 2 C 0.21 5.47 2.59 -68.87 -0.18 5.29 16 3 H 0.00 0.00 7.47 -51.93 -0.39 -0.39 16 4 C -0.52 -14.49 8.59 -34.44 -0.30 -14.78 16 5 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.86 11.32 55.43 0.63 -25.23 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.80 6.36 -99.93 -0.64 -15.43 16 13 C 0.07 1.29 3.96 -66.73 -0.26 1.02 16 14 C -0.13 -2.00 7.41 -26.28 -0.19 -2.20 16 15 C -0.11 -1.46 1.11 -154.71 -0.17 -1.63 16 16 C -0.13 -1.49 7.84 -26.28 -0.21 -1.70 16 17 C -0.14 -1.51 8.08 -25.75 -0.21 -1.71 16 18 C -0.12 -1.45 7.84 -26.28 -0.21 -1.65 16 19 C -0.10 -1.61 7.64 -26.28 -0.20 -1.81 16 20 H 0.00 0.11 8.06 -51.93 -0.42 -0.31 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.33 7.06 8.04 -39.29 -0.32 6.75 16 25 H 0.06 1.23 7.48 -51.93 -0.39 0.84 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -28.36 280.71 -8.49 -36.85 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.01 Total: 3.44 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.68 Total: -20.34 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.01 Total: -40.67 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.36 -8.49 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642858524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.452 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds