Wall clock time and date at job start Mon Mar 30 2020 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46976 * 2 1 4 4 C 1.50695 * 109.47298 * 119.99595 * 2 1 3 5 5 H 1.08004 * 119.99635 * 119.99896 * 4 2 1 6 6 C 1.37876 * 120.00440 * 300.00613 * 4 2 1 7 7 N 1.31516 * 119.99650 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00096 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47130 * 60.00062 * 8 6 4 10 10 H 1.48502 * 109.47176 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47466 * 299.99796 * 8 6 4 12 12 N 1.46900 * 109.47536 * 240.00507 * 2 1 3 13 13 C 1.46893 * 111.00302 * 84.99564 * 12 2 1 14 14 C 1.53953 * 113.58025 * 155.00521 * 13 12 2 15 15 C 1.52903 * 86.78369 * 139.33775 * 14 13 12 16 16 C 1.52910 * 121.14315 * 209.37282 * 15 14 13 17 17 C 1.53950 * 86.78717 * 209.38472 * 16 15 14 18 18 C 1.52917 * 121.13601 * 100.81371 * 15 14 13 19 19 C 1.52905 * 88.04187 * 335.09639 * 15 14 13 20 20 H 1.08996 * 109.47262 * 60.00328 * 1 2 3 21 21 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47244 * 299.99951 * 1 2 3 23 23 H 0.97002 * 119.99799 * 180.02562 * 7 6 4 24 24 H 1.00897 * 110.99942 * 208.95563 * 12 2 1 25 25 H 1.08996 * 112.88052 * 23.86005 * 13 12 2 26 26 H 1.08997 * 113.66155 * 24.86438 * 14 13 12 27 27 H 1.09003 * 113.74418 * 253.82134 * 14 13 12 28 28 H 1.09007 * 113.65999 * 323.86104 * 16 15 14 29 29 H 1.09002 * 113.66292 * 94.90614 * 16 15 14 30 30 H 1.09001 * 113.57502 * 270.13001 * 17 16 15 31 31 H 1.08998 * 113.58006 * 139.33297 * 17 16 15 32 32 H 1.09001 * 113.65915 * 265.09556 * 18 15 14 33 33 H 1.08997 * 113.66386 * 36.05279 * 18 15 14 34 34 H 1.09007 * 113.66063 * 139.37650 * 19 15 14 35 35 H 1.08999 * 113.66512 * 270.43076 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9426 0.8296 2.6034 8 14 2.3214 -1.1202 4.0079 9 1 3.8064 -1.1207 4.0081 10 1 1.8270 -0.4198 5.2204 11 1 1.8260 -2.5201 4.0078 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3468 14 6 3.1045 -0.2011 -3.4174 15 6 2.0624 0.2182 -4.4548 16 6 1.9954 -0.4560 -5.8256 17 6 1.4485 0.8802 -6.3598 18 6 2.1635 1.5613 -5.1788 19 6 0.9863 -0.0310 -3.3976 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7085 1.1612 3.4844 24 1 2.9173 -1.1204 -1.0287 25 1 2.1692 1.2681 -2.0509 26 1 3.3182 -1.2699 -3.4193 27 1 4.0060 0.4115 -3.4305 28 1 2.9719 -0.7223 -6.2304 29 1 1.2770 -1.2743 -5.8760 30 1 0.3621 0.9560 -6.3142 31 1 1.8523 1.1587 -7.3332 32 1 1.5794 2.3547 -4.7124 33 1 3.1872 1.8630 -5.4004 34 1 0.1948 0.7185 -3.3938 35 1 0.6047 -1.0520 -3.3939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642858524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:04 Heat of formation + Delta-G solvation = 15.106198 kcal Electronic energy + Delta-G solvation = -13957.291257 eV Core-core repulsion = 11762.370775 eV Total energy + Delta-G solvation = -2194.920482 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.26553 -37.63067 -35.41394 -33.27299 -29.57730 -27.35047 -26.60735 -26.56735 -24.37328 -22.02709 -21.19797 -18.77305 -18.41295 -16.90968 -16.43587 -16.21955 -16.06332 -15.51679 -14.79454 -14.00185 -13.82651 -13.58751 -13.26732 -12.92232 -12.80675 -12.79058 -12.61749 -12.35801 -12.28573 -12.10068 -11.80736 -11.55643 -11.04369 -10.97071 -10.90553 -10.57778 -10.49530 -9.05281 -8.13464 -6.28544 1.41876 1.44254 1.51929 2.41285 3.14410 3.49246 3.54711 3.78790 3.84878 3.98374 4.05965 4.11104 4.49659 4.63029 4.82327 4.84322 4.88989 4.90077 4.97926 5.02790 5.10217 5.12977 5.15090 5.16099 5.25181 5.37897 5.52044 5.58547 5.65728 5.75106 5.86679 6.21731 6.50624 6.81152 7.02008 7.42255 8.91992 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.073405 B = 0.006349 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.356065 B = 4408.741640 C = 4550.871682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.216 3.784 3 H -0.035 1.035 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.674 5.674 13 C 0.053 3.947 14 C -0.120 4.120 15 C -0.104 4.104 16 C -0.121 4.121 17 C -0.130 4.130 18 C -0.121 4.121 19 C -0.096 4.096 20 H 0.019 0.981 21 H 0.026 0.974 22 H 0.055 0.945 23 H 0.263 0.737 24 H 0.332 0.668 25 H 0.040 0.960 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 -0.681 -14.784 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 H -0.018 1.018 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.305 5.305 13 C -0.058 4.058 14 C -0.158 4.158 15 C -0.104 4.104 16 C -0.158 4.158 17 C -0.168 4.168 18 C -0.158 4.158 19 C -0.134 4.134 20 H 0.038 0.962 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.150 0.850 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.107 -0.809 -14.805 14.976 hybrid contribution 0.789 0.412 1.499 1.744 sum 2.896 -0.397 -13.306 13.623 Atomic orbital electron populations 1.21496 0.97855 0.98627 0.98761 1.18963 0.92721 0.90445 0.87182 1.01796 1.21601 1.31787 1.12764 0.91721 0.92221 1.25781 0.95129 0.95683 1.02174 1.70033 1.37450 1.24159 1.24243 0.85504 0.78734 0.78624 0.78102 1.19497 1.20878 1.19585 1.60773 1.31676 1.32675 1.05333 1.23055 0.98408 0.93974 0.90331 1.23006 0.96418 1.01654 0.94704 1.22312 0.96610 0.98546 0.92939 1.22742 1.01813 0.97070 0.94175 1.22767 1.00143 0.95959 0.97888 1.22724 1.01480 0.94897 0.96713 1.22693 0.95637 1.01247 0.93863 0.96210 0.95488 0.92666 0.92829 0.84972 0.94224 0.89250 0.91330 0.88947 0.91500 0.90461 0.89954 0.92410 0.88960 0.92977 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.70 9.19 71.98 0.66 -5.04 16 2 C 0.22 11.48 2.59 44.17 0.11 11.59 16 3 H -0.04 -2.10 7.47 -2.39 -0.02 -2.12 16 4 C -0.54 -30.53 8.59 25.60 0.22 -30.31 16 5 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -54.27 11.32 21.45 0.24 -54.03 16 8 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.67 -29.79 6.36 -470.07 -2.99 -32.78 16 13 C 0.05 1.97 3.96 45.55 0.18 2.15 16 14 C -0.12 -3.47 7.41 30.88 0.23 -3.24 16 15 C -0.10 -2.67 1.11 -52.31 -0.06 -2.72 16 16 C -0.12 -2.46 7.84 30.88 0.24 -2.22 16 17 C -0.13 -2.43 8.08 31.23 0.25 -2.18 16 18 C -0.12 -2.68 7.84 30.89 0.24 -2.44 16 19 C -0.10 -3.11 7.64 30.88 0.24 -2.88 16 20 H 0.02 0.92 8.06 -2.39 -0.02 0.90 16 21 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.05 3.14 6.07 -2.39 -0.01 3.13 16 23 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 24 H 0.33 14.26 8.04 -89.70 -0.72 13.54 16 25 H 0.04 1.65 7.48 -2.39 -0.02 1.64 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -60.65 280.71 2.37 -58.27 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.32 Total: 18.63 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 2.77 Total: -36.20 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -2.75 Total: -86.81 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -60.65 2.37 -58.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642858524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.380 kcal (2) G-P(sol) polarization free energy of solvation -60.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds